Clone LP16167 Report

Search the DGRC for LP16167

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:161
Well:67
Vector:pOT2
Associated Gene/Transcriptttm2-RA
Protein status:LP16167.pep: gold
Sequenced Size:1463

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12313 2008-04-29 Release 5.5 accounting
CG12313 2008-04-29 Picked prior to 5.5
ttm2 2008-08-15 Release 5.9 accounting
ttm2 2008-12-18 5.12 accounting

Clone Sequence Records

LP16167.complete Sequence

1463 bp assembled on 2007-10-25

GenBank Submission: BT031147

> LP16167.complete
TTACCTCTAACTCGGCTTGGTAATATAAAGATGTTAAATTTAATAGTGTT
TCTTTACTTAACTGCAAGCCCCCTTTAAATTGATCGATCTTTCGAGGCAA
ATCTTCAAGTTACCAATGTCTTTAATAGCCATTGAAAGGGTGTTATGTGG
CTGGCCCAAGATTTGCCGCAAACTTATTGTAACGTCGCGGTCGCTGACCT
CCGGCTTGCGGCGGGCACTGGTCAAGCAGCCCCGTAAAGGCGGAGATGTT
GGAAAACCCGGAATGGAGCTTGGGCGCTGTTCGTGCTTTGGACTCCGTGT
GAACCTCAGCAATGCATCCGTCGTATACGTTGGCCACCGACGCTACTCGA
CGTACGAGAAGACGTCTACGCAAATTTTAACGAAGCTCTTTCCACAAACC
TCTGAGGAGTCCAACGACGAGGAAAGTCGTGAGCGGCGGAAACTTGAGGA
GGAGGAGGAGCAGAAGGAATTGGAGCGGGCATTTAGGCGGATGAAACTGG
GCTTTGGGCTTTTCGGCATAGGTAGCATGTTGTTCTCGTTTTGGGCTATA
TATTTCTATGGAAGGCCGTCCTTGGATGAGCACGGAAATGAAGTAATCGA
CGAATTTAGTTGTCTGCCACAGATGCAGCAGCTTATGTGGCGGACATGGA
AGTCGGTGAACCGCTTTCAACGGTTTTTCAAAGAGCCGTCGAGAAAAAAG
CTGCTTCCTGATCCCCTTCAGCCCCCCTACGTGCAGCCGCCGTATACTTT
GGTACTTGAGATTAAGGATGTGCTGGTACATCCCGATTGGACCTACGAAA
CAGGATGGCGCTTCAAGAAGCGCCCTGGCGTTGACGTGTTTTTGAAAGAA
TGTGCCAAGTATTTTGAGATTGTTGTTTACACGGCGGAGCAAGGAGTTAC
TGTGTTCCCGCTGGTCGACGCGCTTGATCCGAACGGCTGTATTATGTATC
GCCTGGTTCGCGACTCTACGCACTTTGATGGAGGGCACCACGTGAAGAAC
CTTGACAACCTCAACCGAGACCTAAAGCGAGTGGTTGTCGTGGACTGGGA
TAGAAATTCCACCAAGTTTCACCCTTCGAATTCATTCTCGATCCCGCGGT
GGTCTGGAAACGACAATGACACTACCCTCTTTGAACTCACGTCGTTTCTT
AGTGTTCTAGGAACGAGTGAGATCGACGATGTCCGAGAAGTGCTGCAATA
CTACAATCAGTTTAGTGACTCGTTATCCCAGTTCAGAGAAAACCAGCGAA
AGCTGGGTGAGCTAATGCACGCCGAGGAGGTAGAAAAAACTAGCAAGTCT
AGGCCCGTTGTCAAGAACTGGACCCGTGGCTTCATAAATCATTAAAAAGA
TTGTGCGTTTGATGTGTCCCTTAAATACTGTTAATTCACCCAAAAAATTA
CATTAAAACTTTCCTAGCATTCTTCAATGTCTACCTACTAACAGCAAAAA
AAAAAAAAAAAAA

LP16167.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
ttm2-RA 1504 ttm2-RA 60..1504 1..1445 7225 100 Plus
ttm50-RA 1935 ttm50-RA 874..1239 701..1066 495 75.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 275176..276620 1..1445 7225 100 Plus
chrX 22417052 chrX 2624768..2625094 1027..701 435 75.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:57:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 275223..276668 1..1446 7230 100 Plus
X 23542271 X 2730952..2731278 1027..701 435 75.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 275223..276668 1..1446 7230 100 Plus
X 23527363 X 2739050..2739376 1027..701 435 75.5 Minus
Blast to na_te.dros performed 2019-03-15 11:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\worf 4174 Dmir\worf WORF 4174bp Derived from AY144572. 807..852 495..448 118 75 Minus

LP16167.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:24:43 Download gff for LP16167.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 275176..276620 1..1445 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:43:02 Download gff for LP16167.complete
Subject Subject Range Query Range Percent Splice Strand
ttm2-RA 1..1230 116..1345 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:05:45 Download gff for LP16167.complete
Subject Subject Range Query Range Percent Splice Strand
ttm2-RA 1..1230 116..1345 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:28:21 Download gff for LP16167.complete
Subject Subject Range Query Range Percent Splice Strand
ttm2-RA 1..1230 116..1345 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:52:03 Download gff for LP16167.complete
Subject Subject Range Query Range Percent Splice Strand
ttm2-RA 1..1230 116..1345 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:32:36 Download gff for LP16167.complete
Subject Subject Range Query Range Percent Splice Strand
ttm2-RA 1..1230 116..1345 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:00:11 Download gff for LP16167.complete
Subject Subject Range Query Range Percent Splice Strand
ttm2-RA 60..1498 1..1439 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:05:45 Download gff for LP16167.complete
Subject Subject Range Query Range Percent Splice Strand
ttm2-RA 60..1498 1..1439 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:28:21 Download gff for LP16167.complete
Subject Subject Range Query Range Percent Splice Strand
ttm2-RA 69..1513 1..1445 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:52:03 Download gff for LP16167.complete
Subject Subject Range Query Range Percent Splice Strand
ttm2-RA 60..1498 1..1439 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:36 Download gff for LP16167.complete
Subject Subject Range Query Range Percent Splice Strand
ttm2-RA 69..1513 1..1445 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:24:43 Download gff for LP16167.complete
Subject Subject Range Query Range Percent Splice Strand
3L 275223..276667 1..1445 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:24:43 Download gff for LP16167.complete
Subject Subject Range Query Range Percent Splice Strand
3L 275223..276667 1..1445 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:24:43 Download gff for LP16167.complete
Subject Subject Range Query Range Percent Splice Strand
3L 275223..276667 1..1445 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:28:21 Download gff for LP16167.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 275223..276667 1..1445 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:57:57 Download gff for LP16167.complete
Subject Subject Range Query Range Percent Splice Strand
3L 275223..276667 1..1445 100   Plus

LP16167.pep Sequence

Translation from 115 to 1344

> LP16167.pep
MSLIAIERVLCGWPKICRKLIVTSRSLTSGLRRALVKQPRKGGDVGKPGM
ELGRCSCFGLRVNLSNASVVYVGHRRYSTYEKTSTQILTKLFPQTSEESN
DEESRERRKLEEEEEQKELERAFRRMKLGFGLFGIGSMLFSFWAIYFYGR
PSLDEHGNEVIDEFSCLPQMQQLMWRTWKSVNRFQRFFKEPSRKKLLPDP
LQPPYVQPPYTLVLEIKDVLVHPDWTYETGWRFKKRPGVDVFLKECAKYF
EIVVYTAEQGVTVFPLVDALDPNGCIMYRLVRDSTHFDGGHHVKNLDNLN
RDLKRVVVVDWDRNSTKFHPSNSFSIPRWSGNDNDTTLFELTSFLSVLGT
SEIDDVREVLQYYNQFSDSLSQFRENQRKLGELMHAEEVEKTSKSRPVVK
NWTRGFINH*

LP16167.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25046-PA 427 GF25046-PA 1..427 1..409 1469 72.4 Plus
Dana\GF22482-PA 411 GF22482-PA 86..409 83..407 1060 61.2 Plus
Dana\GF23743-PA 336 GF23743-PA 16..319 91..396 797 51.3 Plus
Dana\GF10364-PA 329 GF10364-PA 130..258 235..365 191 35.9 Plus
Dana\GF12569-PA 282 GF12569-PA 111..275 188..360 155 28.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14712-PA 411 GG14712-PA 1..411 1..409 1720 83.2 Plus
Dere\GG18609-PA 422 GG18609-PA 97..420 83..407 1079 62.6 Plus
Dere\GG21359-PA 305 GG21359-PA 43..303 123..382 754 53.4 Plus
Dere\GG13507-PA 324 GG13507-PA 130..275 235..386 197 34.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15740-PA 410 GH15740-PA 1..409 1..407 1410 65.9 Plus
Dgri\GH17760-PA 407 GH17760-PA 80..405 81..407 1074 60.6 Plus
Dgri\GH10458-PA 576 GH10458-PA 308..563 127..383 793 57.5 Plus
Dgri\GH16757-PA 341 GH16757-PA 128..256 235..365 192 35.9 Plus
Dgri\GH12888-PA 243 GH12888-PA 109..233 235..360 156 32.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
ttm2-PA 409 CG12313-PA 1..409 1..409 2179 100 Plus
ttm50-PB 428 CG2713-PB 107..426 87..407 1119 63.4 Plus
ttm50-PA 428 CG2713-PA 107..426 87..407 1119 63.4 Plus
ttm3-PA 343 CG6691-PA 53..312 124..382 771 54.4 Plus
CG5830-PA 329 CG5830-PA 130..273 235..380 195 32.9 Plus
CG5830-PB 352 CG5830-PB 153..296 235..380 195 32.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12797-PA 411 GI12797-PA 1..409 1..407 1378 68.9 Plus
Dmoj\GI15094-PA 409 GI15094-PA 83..407 82..407 1086 62.1 Plus
Dmoj\GI17713-PA 359 GI17713-PA 86..344 125..383 850 56.9 Plus
Dmoj\GI13418-PA 331 GI13418-PA 128..256 235..365 192 35.9 Plus
Dmoj\GI20773-PA 313 GI20773-PA 177..302 235..361 153 32 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16126-PA 367 GL16126-PA 29..366 57..408 1230 68.2 Plus
Dper\GL19807-PA 310 GL19807-PA 23..308 122..407 1004 62.2 Plus
Dper\GL25662-PA 349 GL25662-PA 37..337 103..403 851 53.4 Plus
Dper\GL12819-PA 333 GL12819-PA 130..258 235..365 192 35.9 Plus
Dper\GL17365-PA 286 GL17365-PA 155..280 235..361 161 33.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11549-PA 388 GA11549-PA 37..387 57..408 1317 71.3 Plus
Dpse\GA15443-PA 390 GA15443-PA 60..388 78..407 1035 60.3 Plus
Dpse\GA25377-PA 349 GA25377-PA 37..337 103..403 858 53.8 Plus
Dpse\GA19163-PA 335 GA19163-PA 130..258 235..365 192 35.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14328-PA 401 GM14328-PA 1..401 1..409 1907 91.2 Plus
Dsec\GM16156-PA 343 GM16156-PA 65..312 135..382 772 56.2 Plus
Dsec\GM24453-PA 412 GM24453-PA 211..339 235..365 192 35.9 Plus
Dsec\GM18857-PA 149 GM18857-PA 83..147 343..407 175 48.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11008-PA 402 GD11008-PA 1..402 1..409 1941 92.4 Plus
Dsim\GD16356-PA 428 GD16356-PA 107..426 87..407 1065 62.1 Plus
Dsim\GD24345-PA 343 GD24345-PA 63..312 133..382 776 56.2 Plus
Dsim\GD12523-PA 331 GD12523-PA 130..258 235..365 191 35.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16096-PA 411 GJ16096-PA 1..409 1..407 1393 69.6 Plus
Dvir\GJ18901-PA 413 GJ18901-PA 69..411 64..407 1076 58.4 Plus
Dvir\GJ11495-PA 354 GJ11495-PA 80..340 125..383 778 57.1 Plus
Dvir\GJ11778-PA 329 GJ11778-PA 127..255 235..365 191 35.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25521-PA 407 GK25521-PA 86..405 87..407 1070 63 Plus
Dwil\GK14784-PA 400 GK14784-PA 65..396 78..406 1030 60.5 Plus
Dwil\GK18701-PA 375 GK18701-PA 35..370 75..407 851 47.9 Plus
Dwil\GK16545-PA 315 GK16545-PA 46..314 67..371 790 54.8 Plus
Dwil\GK23622-PA 325 GK23622-PA 131..254 235..360 187 35.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21075-PA 409 GE21075-PA 1..409 1..409 1725 86.8 Plus
Dyak\GE16923-PA 424 GE16923-PA 99..422 83..407 1112 62.5 Plus
Dyak\GE12974-PA 320 GE12974-PA 45..305 123..382 743 52.7 Plus
Dyak\GE23126-PA 325 GE23126-PA 130..275 235..386 195 34.9 Plus

LP16167.hyp Sequence

Translation from 115 to 1344

> LP16167.hyp
MSLIAIERVLCGWPKICRKLIVTSRSLTSGLRRALVKQPRKGGDVGKPGM
ELGRCSCFGLRVNLSNASVVYVGHRRYSTYEKTSTQILTKLFPQTSEESN
DEESRERRKLEEEEEQKELERAFRRMKLGFGLFGIGSMLFSFWAIYFYGR
PSLDEHGNEVIDEFSCLPQMQQLMWRTWKSVNRFQRFFKEPSRKKLLPDP
LQPPYVQPPYTLVLEIKDVLVHPDWTYETGWRFKKRPGVDVFLKECAKYF
EIVVYTAEQGVTVFPLVDALDPNGCIMYRLVRDSTHFDGGHHVKNLDNLN
RDLKRVVVVDWDRNSTKFHPSNSFSIPRWSGNDNDTTLFELTSFLSVLGT
SEIDDVREVLQYYNQFSDSLSQFRENQRKLGELMHAEEVEKTSKSRPVVK
NWTRGFINH*

LP16167.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
ttm2-PA 409 CG12313-PA 1..409 1..409 2179 100 Plus
ttm50-PB 428 CG2713-PB 107..426 87..407 1119 63.4 Plus
ttm50-PA 428 CG2713-PA 107..426 87..407 1119 63.4 Plus
ttm3-PA 343 CG6691-PA 53..312 124..382 771 54.4 Plus
CG5830-PA 329 CG5830-PA 130..273 235..380 195 32.9 Plus