Clone LP16180 Report

Search the DGRC for LP16180

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:161
Well:80
Vector:pOT2
Associated Gene/TranscriptCG7966-RA
Protein status:LP16180.pep: gold
Sequenced Size:1554

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7966 2003-01-01 Sim4 clustering to Release 3
CG7966 2004-08-13 Blastp of sequenced clone
CG7966 2008-04-29 Release 5.5 accounting
CG7966 2008-08-15 Release 5.9 accounting
CG7966 2008-12-18 5.12 accounting

Clone Sequence Records

LP16180.complete Sequence

1554 bp (1554 high quality bases) assembled on 2004-08-13

GenBank Submission: BT016055

> LP16180.complete
CTTCGACCCACAACAACCGCCAAGCAATGTCCAATAAAACCTGTTGCCGA
GGACCGGGTTACGCAACCCCCCTGGACGCCATGAGGAGTGGTCCCCGGGA
GAAGCTCCTCTACACGGTCACCGTTCAGCCCAACTTGGATGAGCCGCACG
GCGATTATCTGTCCACAGTCGACGTGGATCCCGAGAGCCCCACCTACTGT
CAGATAGTGCACCGTACGTTTACAAATCGCAAGGGTGATGAACTGCATCA
TTCTGGCTGGAACGCCTGCTCCAGTTGTTACTATGTCGACGAGAGCTCTA
AGACGGTGCCAAAAAGAGATAGGCTGGTATTACCGTCCCTAAATTCCGAC
TTTATATACATACTCGATGTGGTTACGGATCCGCGAAAGCCCGAGATTGT
CAAGACCATTGATGGTGATGTCTTGAAGAGCCACAATGTGACGGCTCCGC
ATACCACACACTGTTTGGCCAATGGGAACATCATGATATCCGTGATGGGC
GATGCAGAGGGATATGCCAAGGGTGACTTTATCCTCTTCGATTCGGACTT
CAATTGCATCGGTACTTGGACCAAGGGCGATAAGAAGGCATTGTGCGGAT
ACGATTTCTGGTATCAGCCATATTTCGATGTCATGGTTTCTTCGGAATGG
GGAGCTCCCAATAAATGGCGACGAGGCTGGAAGAATGTTGACCTGGAGGA
TATGTCTCAGTACGGCTGTCGTCTCAACTTCTACAAATGGTCCACGCAGA
CTCTCTACCAGACCATCGACCTGGGATCGGATGGCATAACGCCCCTGGAG
ATTCGATTTCTGCACAATCCTAAGAAGGCAGAGGGATTCGTGGGATGTGC
CCTCAATGCCAAGGTGTTCCACTTTAAGAAGAAATCAGATTCCGATGAAT
TTGAAGCCAAGAAGGTAATAGACATACCCGGCAAACTGGTCGATACCGGC
AGTGGAGTAGCTGAAGATATGGGTGGCATGATTTCGGACATTATCATCTC
TTTGGACGACCGATTTCTATATGTCAACTGTTGGCGACATGGCGATGTGA
GACAATATGATATCACCGATCCCGAGAATCCGAAGCTGACTGGTCAGCTT
TTCCTTGGCGGTGCGATATGCAGTGATTTGCCAAATGTGATTGTTAAGGA
GGATAAAGAACTGAAGGAGAGACCTCCAGCTCGTTACGTGAAGGGACGTC
GCTTGGAAGGAGGTCCCCAAATGCTGCAGCTATCCCTCGATGGCAAGCGC
TTGTATGTCTCCTCATCTCTGTATTCGCCATGGGATAAGCAGTTCTATCC
AAAAATGGTTTCGCAGGGCGGTCATATTGTCCTGATTGATGTGGACACTG
TGAATGGAGGAATTTCCCTCAATGAGGACTTTTTGGTGGACTTCGCCAAT
GAACCCTATGGTCCTAGTTTGCCCCACGAAATGCGTTATCCTGGCGGTGA
TTGCACATCGGACATTTGGCTGGCTAATGATGCGTAATCTTGATTCCAAT
TTTGTAAAGATTTAATAAACTCATTCTTTTAAAGGTAAAAAAAAAAAAAA
AAAA

LP16180.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7966-RA 1648 CG7966-RA 33..1569 1..1537 7685 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8875115..8875609 1167..673 2475 100 Minus
chr3R 27901430 chr3R 8875672..8876144 673..201 2365 100 Minus
chr3R 27901430 chr3R 8874615..8874860 1536..1291 1230 100 Minus
chr3R 27901430 chr3R 8876337..8876500 203..40 820 100 Minus
chr3R 27901430 chr3R 8874928..8875055 1292..1165 640 100 Minus
chr3R 27901430 chr3R 8876611..8876649 39..1 195 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:57:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13049898..13050392 1167..673 2475 100 Minus
3R 32079331 3R 13050455..13050927 673..201 2365 100 Minus
3R 32079331 3R 13049397..13049643 1537..1291 1235 100 Minus
3R 32079331 3R 13051120..13051283 203..40 820 100 Minus
3R 32079331 3R 13049711..13049838 1292..1165 640 100 Minus
3R 32079331 3R 13051394..13051432 39..1 195 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12790729..12791223 1167..673 2475 100 Minus
3R 31820162 3R 12791286..12791758 673..201 2365 100 Minus
3R 31820162 3R 12790228..12790474 1537..1291 1235 100 Minus
3R 31820162 3R 12791951..12792114 203..40 820 100 Minus
3R 31820162 3R 12790542..12790669 1292..1165 640 100 Minus
3R 31820162 3R 12792225..12792263 39..1 195 100 Minus
Blast to na_te.dros performed 2019-03-16 02:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 3719..3809 283..376 120 61.7 Plus

LP16180.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:28:56 Download gff for LP16180.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8876337..8876500 40..203 100 <- Minus
chr3R 8876611..8876649 1..39 100   Minus
chr3R 8874615..8874858 1293..1536 100 <- Minus
chr3R 8874928..8875053 1167..1292 100 <- Minus
chr3R 8875116..8875608 674..1166 100 <- Minus
chr3R 8875672..8876141 204..673 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:43:04 Download gff for LP16180.complete
Subject Subject Range Query Range Percent Splice Strand
CG7966-RA 1..1461 27..1487 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:32:59 Download gff for LP16180.complete
Subject Subject Range Query Range Percent Splice Strand
CG7966-RA 1..1461 27..1487 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:13:13 Download gff for LP16180.complete
Subject Subject Range Query Range Percent Splice Strand
CG7966-RA 1..1461 27..1487 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:16:49 Download gff for LP16180.complete
Subject Subject Range Query Range Percent Splice Strand
CG7966-RA 1..1461 27..1487 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:11:31 Download gff for LP16180.complete
Subject Subject Range Query Range Percent Splice Strand
CG7966-RA 1..1461 27..1487 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:38:27 Download gff for LP16180.complete
Subject Subject Range Query Range Percent Splice Strand
CG7966-RA 19..1554 1..1536 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:32:59 Download gff for LP16180.complete
Subject Subject Range Query Range Percent Splice Strand
CG7966-RA 19..1554 1..1536 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:13:13 Download gff for LP16180.complete
Subject Subject Range Query Range Percent Splice Strand
CG7966-RA 22..1557 1..1536 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:16:49 Download gff for LP16180.complete
Subject Subject Range Query Range Percent Splice Strand
CG7966-RA 19..1554 1..1536 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:11:31 Download gff for LP16180.complete
Subject Subject Range Query Range Percent Splice Strand
CG7966-RA 22..1557 1..1536 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:28:56 Download gff for LP16180.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13050455..13050924 204..673 100 <- Minus
3R 13049398..13049641 1293..1536 100 <- Minus
3R 13049711..13049836 1167..1292 100 <- Minus
3R 13049899..13050391 674..1166 100 <- Minus
3R 13051120..13051283 40..203 100 <- Minus
3R 13051394..13051432 1..39 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:28:56 Download gff for LP16180.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13050455..13050924 204..673 100 <- Minus
3R 13049398..13049641 1293..1536 100 <- Minus
3R 13049711..13049836 1167..1292 100 <- Minus
3R 13049899..13050391 674..1166 100 <- Minus
3R 13051120..13051283 40..203 100 <- Minus
3R 13051394..13051432 1..39 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:28:56 Download gff for LP16180.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13050455..13050924 204..673 100 <- Minus
3R 13049398..13049641 1293..1536 100 <- Minus
3R 13049711..13049836 1167..1292 100 <- Minus
3R 13049899..13050391 674..1166 100 <- Minus
3R 13051120..13051283 40..203 100 <- Minus
3R 13051394..13051432 1..39 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:13:13 Download gff for LP16180.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8875120..8875363 1293..1536 100 <- Minus
arm_3R 8875433..8875558 1167..1292 100 <- Minus
arm_3R 8875621..8876113 674..1166 100 <- Minus
arm_3R 8876177..8876646 204..673 100 <- Minus
arm_3R 8876842..8877005 40..203 100 <- Minus
arm_3R 8877116..8877154 1..39 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:53:51 Download gff for LP16180.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12790229..12790472 1293..1536 100 <- Minus
3R 12790542..12790667 1167..1292 100 <- Minus
3R 12790730..12791222 674..1166 100 <- Minus
3R 12791286..12791755 204..673 100 <- Minus
3R 12791951..12792114 40..203 100 <- Minus
3R 12792225..12792263 1..39 100   Minus

LP16180.hyp Sequence

Translation from 2 to 1486

> LP16180.hyp
STHNNRQAMSNKTCCRGPGYATPLDAMRSGPREKLLYTVTVQPNLDEPHG
DYLSTVDVDPESPTYCQIVHRTFTNRKGDELHHSGWNACSSCYYVDESSK
TVPKRDRLVLPSLNSDFIYILDVVTDPRKPEIVKTIDGDVLKSHNVTAPH
TTHCLANGNIMISVMGDAEGYAKGDFILFDSDFNCIGTWTKGDKKALCGY
DFWYQPYFDVMVSSEWGAPNKWRRGWKNVDLEDMSQYGCRLNFYKWSTQT
LYQTIDLGSDGITPLEIRFLHNPKKAEGFVGCALNAKVFHFKKKSDSDEF
EAKKVIDIPGKLVDTGSGVAEDMGGMISDIIISLDDRFLYVNCWRHGDVR
QYDITDPENPKLTGQLFLGGAICSDLPNVIVKEDKELKERPPARYVKGRR
LEGGPQMLQLSLDGKRLYVSSSLYSPWDKQFYPKMVSQGGHIVLIDVDTV
NGGISLNEDFLVDFANEPYGPSLPHEMRYPGGDCTSDIWLANDA*

LP16180.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7966-PA 486 CG7966-PA 1..486 9..494 2655 100 Plus

LP16180.pep Sequence

Translation from 26 to 1486

> LP16180.pep
MSNKTCCRGPGYATPLDAMRSGPREKLLYTVTVQPNLDEPHGDYLSTVDV
DPESPTYCQIVHRTFTNRKGDELHHSGWNACSSCYYVDESSKTVPKRDRL
VLPSLNSDFIYILDVVTDPRKPEIVKTIDGDVLKSHNVTAPHTTHCLANG
NIMISVMGDAEGYAKGDFILFDSDFNCIGTWTKGDKKALCGYDFWYQPYF
DVMVSSEWGAPNKWRRGWKNVDLEDMSQYGCRLNFYKWSTQTLYQTIDLG
SDGITPLEIRFLHNPKKAEGFVGCALNAKVFHFKKKSDSDEFEAKKVIDI
PGKLVDTGSGVAEDMGGMISDIIISLDDRFLYVNCWRHGDVRQYDITDPE
NPKLTGQLFLGGAICSDLPNVIVKEDKELKERPPARYVKGRRLEGGPQML
QLSLDGKRLYVSSSLYSPWDKQFYPKMVSQGGHIVLIDVDTVNGGISLNE
DFLVDFANEPYGPSLPHEMRYPGGDCTSDIWLANDA*

LP16180.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17407-PA 486 GF17407-PA 1..486 1..486 2470 93 Plus
Dana\GF17408-PA 486 GF17408-PA 1..486 1..486 2470 93 Plus
Dana\GF17409-PA 484 GF17409-PA 1..484 1..486 2440 92.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17079-PA 486 GG17079-PA 1..486 1..486 2526 96.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19194-PA 485 GH19194-PA 1..484 1..484 2268 82.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7966-PA 486 CG7966-PA 1..486 1..486 2655 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24228-PA 501 GI24228-PA 19..501 4..486 2270 83.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23146-PA 302 GL23146-PA 1..198 19..216 1013 91.4 Plus
Dper\GL23146-PA 302 GL23146-PA 197..301 381..485 538 93.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30021-PB 486 GA30021-PB 1..485 1..485 2433 90.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25962-PA 311 GM25962-PA 1..234 1..236 1228 97 Plus
Dsec\GM25962-PA 311 GM25962-PA 246..311 421..486 340 93.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20522-PA 486 GD20522-PA 1..486 1..486 2576 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10801-PA 486 GJ10801-PA 1..486 1..486 2306 84.2 Plus
Dvir\GJ10800-PA 486 GJ10800-PA 1..486 1..486 2306 84.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10852-PA 488 GK10852-PA 1..488 1..486 2319 86.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24469-PA 486 GE24469-PA 1..486 1..486 2555 97.1 Plus