BDGP Sequence Production Resources |
Search the DGRC for LP16180
Library: | LP |
Tissue Source: | Drosophila melanogaster larval-early pupal |
Created by: | Ling Hong |
Date Registered: | 1998-06-11 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 161 |
Well: | 80 |
Vector: | pOT2 |
Associated Gene/Transcript | CG7966-RA |
Protein status: | LP16180.pep: gold |
Sequenced Size: | 1554 |
Gene | Date | Evidence |
---|---|---|
CG7966 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7966 | 2004-08-13 | Blastp of sequenced clone |
CG7966 | 2008-04-29 | Release 5.5 accounting |
CG7966 | 2008-08-15 | Release 5.9 accounting |
CG7966 | 2008-12-18 | 5.12 accounting |
1554 bp (1554 high quality bases) assembled on 2004-08-13
GenBank Submission: BT016055
> LP16180.complete CTTCGACCCACAACAACCGCCAAGCAATGTCCAATAAAACCTGTTGCCGA GGACCGGGTTACGCAACCCCCCTGGACGCCATGAGGAGTGGTCCCCGGGA GAAGCTCCTCTACACGGTCACCGTTCAGCCCAACTTGGATGAGCCGCACG GCGATTATCTGTCCACAGTCGACGTGGATCCCGAGAGCCCCACCTACTGT CAGATAGTGCACCGTACGTTTACAAATCGCAAGGGTGATGAACTGCATCA TTCTGGCTGGAACGCCTGCTCCAGTTGTTACTATGTCGACGAGAGCTCTA AGACGGTGCCAAAAAGAGATAGGCTGGTATTACCGTCCCTAAATTCCGAC TTTATATACATACTCGATGTGGTTACGGATCCGCGAAAGCCCGAGATTGT CAAGACCATTGATGGTGATGTCTTGAAGAGCCACAATGTGACGGCTCCGC ATACCACACACTGTTTGGCCAATGGGAACATCATGATATCCGTGATGGGC GATGCAGAGGGATATGCCAAGGGTGACTTTATCCTCTTCGATTCGGACTT CAATTGCATCGGTACTTGGACCAAGGGCGATAAGAAGGCATTGTGCGGAT ACGATTTCTGGTATCAGCCATATTTCGATGTCATGGTTTCTTCGGAATGG GGAGCTCCCAATAAATGGCGACGAGGCTGGAAGAATGTTGACCTGGAGGA TATGTCTCAGTACGGCTGTCGTCTCAACTTCTACAAATGGTCCACGCAGA CTCTCTACCAGACCATCGACCTGGGATCGGATGGCATAACGCCCCTGGAG ATTCGATTTCTGCACAATCCTAAGAAGGCAGAGGGATTCGTGGGATGTGC CCTCAATGCCAAGGTGTTCCACTTTAAGAAGAAATCAGATTCCGATGAAT TTGAAGCCAAGAAGGTAATAGACATACCCGGCAAACTGGTCGATACCGGC AGTGGAGTAGCTGAAGATATGGGTGGCATGATTTCGGACATTATCATCTC TTTGGACGACCGATTTCTATATGTCAACTGTTGGCGACATGGCGATGTGA GACAATATGATATCACCGATCCCGAGAATCCGAAGCTGACTGGTCAGCTT TTCCTTGGCGGTGCGATATGCAGTGATTTGCCAAATGTGATTGTTAAGGA GGATAAAGAACTGAAGGAGAGACCTCCAGCTCGTTACGTGAAGGGACGTC GCTTGGAAGGAGGTCCCCAAATGCTGCAGCTATCCCTCGATGGCAAGCGC TTGTATGTCTCCTCATCTCTGTATTCGCCATGGGATAAGCAGTTCTATCC AAAAATGGTTTCGCAGGGCGGTCATATTGTCCTGATTGATGTGGACACTG TGAATGGAGGAATTTCCCTCAATGAGGACTTTTTGGTGGACTTCGCCAAT GAACCCTATGGTCCTAGTTTGCCCCACGAAATGCGTTATCCTGGCGGTGA TTGCACATCGGACATTTGGCTGGCTAATGATGCGTAATCTTGATTCCAAT TTTGTAAAGATTTAATAAACTCATTCTTTTAAAGGTAAAAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7966-RA | 1648 | CG7966-RA | 33..1569 | 1..1537 | 7685 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 8875115..8875609 | 1167..673 | 2475 | 100 | Minus |
chr3R | 27901430 | chr3R | 8875672..8876144 | 673..201 | 2365 | 100 | Minus |
chr3R | 27901430 | chr3R | 8874615..8874860 | 1536..1291 | 1230 | 100 | Minus |
chr3R | 27901430 | chr3R | 8876337..8876500 | 203..40 | 820 | 100 | Minus |
chr3R | 27901430 | chr3R | 8874928..8875055 | 1292..1165 | 640 | 100 | Minus |
chr3R | 27901430 | chr3R | 8876611..8876649 | 39..1 | 195 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 13049898..13050392 | 1167..673 | 2475 | 100 | Minus |
3R | 32079331 | 3R | 13050455..13050927 | 673..201 | 2365 | 100 | Minus |
3R | 32079331 | 3R | 13049397..13049643 | 1537..1291 | 1235 | 100 | Minus |
3R | 32079331 | 3R | 13051120..13051283 | 203..40 | 820 | 100 | Minus |
3R | 32079331 | 3R | 13049711..13049838 | 1292..1165 | 640 | 100 | Minus |
3R | 32079331 | 3R | 13051394..13051432 | 39..1 | 195 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 12790729..12791223 | 1167..673 | 2475 | 100 | Minus |
3R | 31820162 | 3R | 12791286..12791758 | 673..201 | 2365 | 100 | Minus |
3R | 31820162 | 3R | 12790228..12790474 | 1537..1291 | 1235 | 100 | Minus |
3R | 31820162 | 3R | 12791951..12792114 | 203..40 | 820 | 100 | Minus |
3R | 31820162 | 3R | 12790542..12790669 | 1292..1165 | 640 | 100 | Minus |
3R | 31820162 | 3R | 12792225..12792263 | 39..1 | 195 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 3719..3809 | 283..376 | 120 | 61.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 8876337..8876500 | 40..203 | 100 | <- | Minus |
chr3R | 8876611..8876649 | 1..39 | 100 | Minus | |
chr3R | 8874615..8874858 | 1293..1536 | 100 | <- | Minus |
chr3R | 8874928..8875053 | 1167..1292 | 100 | <- | Minus |
chr3R | 8875116..8875608 | 674..1166 | 100 | <- | Minus |
chr3R | 8875672..8876141 | 204..673 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7966-RA | 1..1461 | 27..1487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7966-RA | 1..1461 | 27..1487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7966-RA | 1..1461 | 27..1487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7966-RA | 1..1461 | 27..1487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7966-RA | 1..1461 | 27..1487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7966-RA | 19..1554 | 1..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7966-RA | 19..1554 | 1..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7966-RA | 22..1557 | 1..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7966-RA | 19..1554 | 1..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7966-RA | 22..1557 | 1..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13050455..13050924 | 204..673 | 100 | <- | Minus |
3R | 13049398..13049641 | 1293..1536 | 100 | <- | Minus |
3R | 13049711..13049836 | 1167..1292 | 100 | <- | Minus |
3R | 13049899..13050391 | 674..1166 | 100 | <- | Minus |
3R | 13051120..13051283 | 40..203 | 100 | <- | Minus |
3R | 13051394..13051432 | 1..39 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13050455..13050924 | 204..673 | 100 | <- | Minus |
3R | 13049398..13049641 | 1293..1536 | 100 | <- | Minus |
3R | 13049711..13049836 | 1167..1292 | 100 | <- | Minus |
3R | 13049899..13050391 | 674..1166 | 100 | <- | Minus |
3R | 13051120..13051283 | 40..203 | 100 | <- | Minus |
3R | 13051394..13051432 | 1..39 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13050455..13050924 | 204..673 | 100 | <- | Minus |
3R | 13049398..13049641 | 1293..1536 | 100 | <- | Minus |
3R | 13049711..13049836 | 1167..1292 | 100 | <- | Minus |
3R | 13049899..13050391 | 674..1166 | 100 | <- | Minus |
3R | 13051120..13051283 | 40..203 | 100 | <- | Minus |
3R | 13051394..13051432 | 1..39 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 8875120..8875363 | 1293..1536 | 100 | <- | Minus |
arm_3R | 8875433..8875558 | 1167..1292 | 100 | <- | Minus |
arm_3R | 8875621..8876113 | 674..1166 | 100 | <- | Minus |
arm_3R | 8876177..8876646 | 204..673 | 100 | <- | Minus |
arm_3R | 8876842..8877005 | 40..203 | 100 | <- | Minus |
arm_3R | 8877116..8877154 | 1..39 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12790229..12790472 | 1293..1536 | 100 | <- | Minus |
3R | 12790542..12790667 | 1167..1292 | 100 | <- | Minus |
3R | 12790730..12791222 | 674..1166 | 100 | <- | Minus |
3R | 12791286..12791755 | 204..673 | 100 | <- | Minus |
3R | 12791951..12792114 | 40..203 | 100 | <- | Minus |
3R | 12792225..12792263 | 1..39 | 100 | Minus |
Translation from 2 to 1486
> LP16180.hyp STHNNRQAMSNKTCCRGPGYATPLDAMRSGPREKLLYTVTVQPNLDEPHG DYLSTVDVDPESPTYCQIVHRTFTNRKGDELHHSGWNACSSCYYVDESSK TVPKRDRLVLPSLNSDFIYILDVVTDPRKPEIVKTIDGDVLKSHNVTAPH TTHCLANGNIMISVMGDAEGYAKGDFILFDSDFNCIGTWTKGDKKALCGY DFWYQPYFDVMVSSEWGAPNKWRRGWKNVDLEDMSQYGCRLNFYKWSTQT LYQTIDLGSDGITPLEIRFLHNPKKAEGFVGCALNAKVFHFKKKSDSDEF EAKKVIDIPGKLVDTGSGVAEDMGGMISDIIISLDDRFLYVNCWRHGDVR QYDITDPENPKLTGQLFLGGAICSDLPNVIVKEDKELKERPPARYVKGRR LEGGPQMLQLSLDGKRLYVSSSLYSPWDKQFYPKMVSQGGHIVLIDVDTV NGGISLNEDFLVDFANEPYGPSLPHEMRYPGGDCTSDIWLANDA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7966-PA | 486 | CG7966-PA | 1..486 | 9..494 | 2655 | 100 | Plus |
Translation from 26 to 1486
> LP16180.pep MSNKTCCRGPGYATPLDAMRSGPREKLLYTVTVQPNLDEPHGDYLSTVDV DPESPTYCQIVHRTFTNRKGDELHHSGWNACSSCYYVDESSKTVPKRDRL VLPSLNSDFIYILDVVTDPRKPEIVKTIDGDVLKSHNVTAPHTTHCLANG NIMISVMGDAEGYAKGDFILFDSDFNCIGTWTKGDKKALCGYDFWYQPYF DVMVSSEWGAPNKWRRGWKNVDLEDMSQYGCRLNFYKWSTQTLYQTIDLG SDGITPLEIRFLHNPKKAEGFVGCALNAKVFHFKKKSDSDEFEAKKVIDI PGKLVDTGSGVAEDMGGMISDIIISLDDRFLYVNCWRHGDVRQYDITDPE NPKLTGQLFLGGAICSDLPNVIVKEDKELKERPPARYVKGRRLEGGPQML QLSLDGKRLYVSSSLYSPWDKQFYPKMVSQGGHIVLIDVDTVNGGISLNE DFLVDFANEPYGPSLPHEMRYPGGDCTSDIWLANDA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17407-PA | 486 | GF17407-PA | 1..486 | 1..486 | 2470 | 93 | Plus |
Dana\GF17408-PA | 486 | GF17408-PA | 1..486 | 1..486 | 2470 | 93 | Plus |
Dana\GF17409-PA | 484 | GF17409-PA | 1..484 | 1..486 | 2440 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17079-PA | 486 | GG17079-PA | 1..486 | 1..486 | 2526 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19194-PA | 485 | GH19194-PA | 1..484 | 1..484 | 2268 | 82.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7966-PA | 486 | CG7966-PA | 1..486 | 1..486 | 2655 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24228-PA | 501 | GI24228-PA | 19..501 | 4..486 | 2270 | 83.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23146-PA | 302 | GL23146-PA | 1..198 | 19..216 | 1013 | 91.4 | Plus |
Dper\GL23146-PA | 302 | GL23146-PA | 197..301 | 381..485 | 538 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30021-PB | 486 | GA30021-PB | 1..485 | 1..485 | 2433 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25962-PA | 311 | GM25962-PA | 1..234 | 1..236 | 1228 | 97 | Plus |
Dsec\GM25962-PA | 311 | GM25962-PA | 246..311 | 421..486 | 340 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20522-PA | 486 | GD20522-PA | 1..486 | 1..486 | 2576 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10801-PA | 486 | GJ10801-PA | 1..486 | 1..486 | 2306 | 84.2 | Plus |
Dvir\GJ10800-PA | 486 | GJ10800-PA | 1..486 | 1..486 | 2306 | 84.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10852-PA | 488 | GK10852-PA | 1..488 | 1..486 | 2319 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24469-PA | 486 | GE24469-PA | 1..486 | 1..486 | 2555 | 97.1 | Plus |