Clone LP16520 Report

Search the DGRC for LP16520

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:165
Well:20
Vector:pOT2
Associated Gene/TranscriptCG15728-RA
Protein status:LP16520.pep: gold
Sequenced Size:1158

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15728 2003-01-01 Sim4 clustering to Release 3
CG15728 2004-03-24 Blastp of sequenced clone
CG15728 2008-04-29 Release 5.5 accounting
CG15728 2008-08-15 Release 5.9 accounting
CG15728 2008-12-18 5.12 accounting

Clone Sequence Records

LP16520.complete Sequence

1158 bp (1158 high quality bases) assembled on 2004-03-24

GenBank Submission: BT012314

> LP16520.complete
TTTGCACACATCATATCTTTCAGTCACTAATTTGTAGAAGGAGGAGGAGA
AGCTTTTTCCTCAGATAAAATGGCAGAATACAACATGAGCCACATGGTGC
GACCCCAGGGATTCAGTTTGGAAGAGCTGCGTCAGACTATGAGTCGATCG
GCGATTCGGGAACAATGCTACTTTATTTATGCCACCGGCAATATTCTGGA
GATTATATCTGGTTTTGATGAACTGCTCAACCAGGAGGGGATCCAATTCG
GAGCAGATAAACTGGCTGCGGTGTATGTATGCGGTTTGATGGTTTATCTA
CTCCATCATGAGGACACGTCGGCCACCCAGGTGAAAAGAACTCTTTTCCT
GCAAAAGTGCTTCAATTATATGGCATGCTCCGAGGAAAGCCATATCCACC
AGGTATGCGTCCATGTCCTGGGTCTCTTGGATATCCAGAGTTCGAGCACA
ATGCTCAACCTGATCCTCGGCTGCCGCGTGGCCAGTCCGCTGTGCACAAT
GGCCAGCGTTGTGGCTAACTGTCTGCTCTGGGCCATGTTGGATCATATGT
CGGACTTGGGCCTGGACTTGCACCGATTGCGTCCGGCTAACACACTGCTG
CTCGTCGTTGCCGTGGTGAAGCCGCATATTTATGTAATATCCTATTTGCA
TTCCCTGCACCTGGTGGTCCGTTTGATATCCAGCATCCTGCTGATCGGAC
CATTCAATGCCCAGGGCCAGCAACTGTGCCAGGAGACCGATGTGCCGGAG
GATTATATGAAACTGGCCAGGGACGATTGTTCGATATTAGTTCGCTGGCT
AATCGCGATCGTTGATGAGCTGCGTCCGCTGATGGTGGAGAACAACGATT
TGGGGCATCTGCATGAGCGCCTGGTGCTTTTGGAGTCCATATGTGAGCTT
ATGCAGCTCTTGCATGGCCATTTGGTTAAGTGTTACCAAGGCAAAAGTGG
ACCACAATGTAAGTAATAGCGAACGGAAACAAAGAAATCTGTTATAAATT
CAGATACTTTGATGAGAAGAGAATTGAAATCTTCAATAACTTAACCTAAC
CTTTGAAACTTATTTCAAGAAACAATCGCATCGTATATATATGCAATCAA
CGATTTTATTATACACAATAAAAAGGCTCTAGCTTTAACTAAAAAAAAAA
AAAAAAAA

LP16520.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15728-RA 1190 CG15728-RA 49..1189 1..1141 5705 100 Plus
CG15728.a 1261 CG15728.a 170..1260 51..1141 5455 100 Plus
CG15727-RA 1325 CG15727-RA 1267..1325 1145..1087 280 98.3 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12518633..12519379 394..1140 3690 99.6 Plus
chrX 22417052 chrX 12518375..12518568 200..393 970 100 Plus
chrX 22417052 chrX 12518170..12518320 51..201 755 100 Plus
chrX 22417052 chrX 12518049..12518100 1..52 260 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:57:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12627677..12628428 394..1145 3745 99.9 Plus
X 23542271 X 12627419..12627612 200..393 970 100 Plus
X 23542271 X 12627214..12627364 51..201 755 100 Plus
X 23542271 X 12627093..12627144 1..52 260 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12635775..12636526 394..1145 3745 99.8 Plus
X 23527363 X 12635517..12635710 200..393 970 100 Plus
X 23527363 X 12635312..12635462 51..201 755 100 Plus
X 23527363 X 12635191..12635242 1..52 260 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:45:01 has no hits.

LP16520.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:46:00 Download gff for LP16520.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12518049..12518100 1..52 100 -> Plus
chrX 12518172..12518320 53..201 100 -> Plus
chrX 12518377..12518568 202..393 100 -> Plus
chrX 12518633..12519379 394..1140 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:43:09 Download gff for LP16520.complete
Subject Subject Range Query Range Percent Splice Strand
CG15728-RA 1..897 70..966 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:38:22 Download gff for LP16520.complete
Subject Subject Range Query Range Percent Splice Strand
CG15728-RA 1..897 70..966 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:19:49 Download gff for LP16520.complete
Subject Subject Range Query Range Percent Splice Strand
CG15728-RA 1..897 70..966 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:14:54 Download gff for LP16520.complete
Subject Subject Range Query Range Percent Splice Strand
CG15728-RA 1..897 70..966 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:23:14 Download gff for LP16520.complete
Subject Subject Range Query Range Percent Splice Strand
CG15728-RA 1..897 70..966 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:42:46 Download gff for LP16520.complete
Subject Subject Range Query Range Percent Splice Strand
CG15728-RA 1..1140 1..1140 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:38:22 Download gff for LP16520.complete
Subject Subject Range Query Range Percent Splice Strand
CG15728-RA 1..1140 1..1140 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:49 Download gff for LP16520.complete
Subject Subject Range Query Range Percent Splice Strand
CG15728-RA 1..1140 1..1140 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:14:54 Download gff for LP16520.complete
Subject Subject Range Query Range Percent Splice Strand
CG15728-RA 1..897 70..966 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:23:14 Download gff for LP16520.complete
Subject Subject Range Query Range Percent Splice Strand
CG15728-RA 1..1140 1..1140 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:46:00 Download gff for LP16520.complete
Subject Subject Range Query Range Percent Splice Strand
X 12627216..12627364 53..201 100 -> Plus
X 12627421..12627612 202..393 100 -> Plus
X 12627093..12627144 1..52 100 -> Plus
X 12627677..12628423 394..1140 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:46:00 Download gff for LP16520.complete
Subject Subject Range Query Range Percent Splice Strand
X 12627216..12627364 53..201 100 -> Plus
X 12627421..12627612 202..393 100 -> Plus
X 12627093..12627144 1..52 100 -> Plus
X 12627677..12628423 394..1140 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:46:00 Download gff for LP16520.complete
Subject Subject Range Query Range Percent Splice Strand
X 12627216..12627364 53..201 100 -> Plus
X 12627421..12627612 202..393 100 -> Plus
X 12627093..12627144 1..52 100 -> Plus
X 12627677..12628423 394..1140 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:49 Download gff for LP16520.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12521249..12521397 53..201 100 -> Plus
arm_X 12521454..12521645 202..393 100 -> Plus
arm_X 12521126..12521177 1..52 100 -> Plus
arm_X 12521710..12522456 394..1140 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:51:06 Download gff for LP16520.complete
Subject Subject Range Query Range Percent Splice Strand
X 12635775..12636521 394..1140 100   Plus
X 12635191..12635242 1..52 100 -> Plus
X 12635314..12635462 53..201 100 -> Plus
X 12635519..12635710 202..393 100 -> Plus

LP16520.pep Sequence

Translation from 69 to 965

> LP16520.pep
MAEYNMSHMVRPQGFSLEELRQTMSRSAIREQCYFIYATGNILEIISGFD
ELLNQEGIQFGADKLAAVYVCGLMVYLLHHEDTSATQVKRTLFLQKCFNY
MACSEESHIHQVCVHVLGLLDIQSSSTMLNLILGCRVASPLCTMASVVAN
CLLWAMLDHMSDLGLDLHRLRPANTLLLVVAVVKPHIYVISYLHSLHLVV
RLISSILLIGPFNAQGQQLCQETDVPEDYMKLARDDCSILVRWLIAIVDE
LRPLMVENNDLGHLHERLVLLESICELMQLLHGHLVKCYQGKSGPQCK*

LP16520.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21380-PA 309 GF21380-PA 3..287 6..290 1058 67.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17731-PA 298 GG17731-PA 1..296 1..296 1271 81.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24131-PA 308 GH24131-PA 1..278 10..290 669 44.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG15728-PB 298 CG15728-PB 1..298 1..298 1551 100 Plus
CG15728-PA 298 CG15728-PA 1..298 1..298 1551 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16387-PA 318 GI16387-PA 12..290 10..291 771 48.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13137-PA 116 GL13137-PA 16..114 10..108 221 42.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13917-PA 337 GA13917-PA 25..302 10..290 702 48 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11574-PA 298 GM11574-PA 1..298 1..298 1464 91.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17084-PA 496 GD17084-PA 199..496 1..298 1458 92.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16762-PA 320 GJ16762-PA 14..291 10..290 773 48.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25514-PA 313 GK25514-PA 1..276 8..285 753 51.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17020-PA 298 GE17020-PA 1..298 1..298 1321 82.9 Plus

LP16520.hyp Sequence

Translation from 69 to 965

> LP16520.hyp
MAEYNMSHMVRPQGFSLEELRQTMSRSAIREQCYFIYATGNILEIISGFD
ELLNQEGIQFGADKLAAVYVCGLMVYLLHHEDTSATQVKRTLFLQKCFNY
MACSEESHIHQVCVHVLGLLDIQSSSTMLNLILGCRVASPLCTMASVVAN
CLLWAMLDHMSDLGLDLHRLRPANTLLLVVAVVKPHIYVISYLHSLHLVV
RLISSILLIGPFNAQGQQLCQETDVPEDYMKLARDDCSILVRWLIAIVDE
LRPLMVENNDLGHLHERLVLLESICELMQLLHGHLVKCYQGKSGPQCK*

LP16520.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG15728-PB 298 CG15728-PB 1..298 1..298 1551 100 Plus
CG15728-PA 298 CG15728-PA 1..298 1..298 1551 100 Plus