Clone LP16634 Report

Search the DGRC for LP16634

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:166
Well:34
Vector:pOT2
Associated Gene/TranscriptCG42370-RA
Protein status:LP16634.pep: gold
Sequenced Size:2106

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9508 2003-01-01 Sim4 clustering to Release 3
CG42370 2009-06-08 Manual selection by Joe Carlson

Clone Sequence Records

LP16634.complete Sequence

2106 bp assembled on 2010-01-25

GenBank Submission: BT120163.1

> LP16634.complete
ATGTGGTTGATTGCCTGCCTGTTTATTGTTCCTATTTGCGCTGCTCCAAC
AACCCAGAATGTCGAGGCGGATCCCAATTCACGGCTAATGAACAACATCC
TCAGCTACGTGGCGGAGGATTCCAGTGCGTGCGGCACCTACTTTCAATAT
GCCTGCGGCAAGTACGCAGTACGTCACCGCGACGATCCCTTCACGGAGAT
CATCCAGATGCTGGACCACAAGGTGAACGGAAACCTAGTCCAACTGATGC
ACGAGCTGCACCAGCGCTCCCAGTCACCCGGCTTCAACGAGTCCAGTGTG
GAGGCCAAGGTCTTGCACTTCTACCGCACCTGCCGTGAAGCTCCGCCGAG
TACACGCAAGATGGAGCACTACCTTAGACTAGCCCCTCCTGGCCAGGCAC
TTACATGGCCCCAGTTTATGCCCCGCGGCGAGCCATGGCCAAAGGCTCAA
TTCAAGTGGATGAAGTCCTTGGGACACCTATACCGCTATGGGTTTACCAA
TGTTTTGGTGAACGTGTTGGTCTTACGGAGCTCTGAGAACAGTAACCGCT
TCCGACTGGACATCAGTATGCCTAGTCTCGAAGGGGACGCGCAGCACCTG
GGCGGTTTTCTAAGTACCCTCGCCACTCTCCAGATCATTGGTGTGCCGAC
GAAAAGCATATTACCCCTTGTGCGGAAGATCAGAAGGCTAGAGTCCGCCA
TACGCGTCCTAACCGAAGTGGACGACGATGATGAAAGCGAGACTTGGACT
TTGCGCCAGTGGGAGTACAAAACCGGCTACGCATGGCAGGGTTTCGTCGA
GTCAATAGTTGGCCATAGTGTCTCACATCACTACGTGATGCAGGCGCAGA
ATGCAAAGTACTTCACGGGCCTTAAGCGGCTGATGGACTCCACGGACGCC
GAGGTGGTGGCCAACTACATCATGACCCGATTCGTGCTCTACCTCATAGA
CGACTTTATTGACAGCAATGAGCACATTGATTGCGTCACGGATATGCGCC
GCAACATGAATCTGGCATCGAACCTGCTCTACAAGGAGCGCTTCCTGGAC
CCTGCGACACTACAGCAGTACACCCAGGAAGTTACGAAGGTCTTTGAACA
GCTGCGCCGGCAGTTTCTACTGCAAATCAATGAGAATCGCCTTGGGCTAA
CCAGTGAGCAGAACAGTATGGTTGCCACAAAAGCTCAGCATGTCGTTCTC
AATATTGGGAATTTGCCAAGAGGTCGTGACCATCGTAGCTTTGTCAGCCG
GCACTATGAGGATCTTGTCTTTCCGCTCCCTGATTTCGACTACGCACGTG
AACATCTTAACCTGCTGGAGTTCCGCACCAGAAAGCAGGTTTTACAACTT
AACCAAAGTGCTCCGACACCCGATGAGTTCTTCTACTTGTCGGATCCTAA
AACGGCCATGAGCTCCGGACCCTACTACCTAATGCGACTAAACATCATCG
TTGTGCCACACGGACTTCTACAGGAGCCATTCTTTGCAGCGGATAGCCAC
GACATATTCAAGTACAGCCTGTTGGGATTCGTACTTGCCCATGAGTTGAT
GCACTCAGTCGACACCGTGGGTCTTTATTATGACAGATATGGGAACATAC
ACGAAATCGGACCGCAGATATCCAGTTCGCCACGCTTTGTGGCGGGTTTA
CAGTGCCTGAACCGGAACAGTACACAGTATCTGGACGAGCGTATTGCAGA
CATTGCTGGACTGGATCTGGCCTATTCCACCTACTTCCAGAACAGCTCGC
AAATGAGTCTAACCGATTTTACGACCATTCCGCCGCAACAAATCTTCTTC
CTCAATCTGGCACAGTTCTTCTGCGGCGATGGTGATCCAATAAACTTCGT
TGGTCACGACAACGACGAGACGCGTCTGCAGCAAATGCTCAATGGGTTCG
CGCCGTTTCACGAAGCTTTTGGTTGTCCAGCAAAGAGCAATCAGCCTGAA
AAGTGCCAACTGTGGTAACTGGATTCAAGTAGTGCTTGAAATCTACTAGT
GTATAAAACTATATTAAACAATAAACTAGATGGATCTGAAAAGAGTTCAC
TACCCCATCGAGTTACTCACTCACATTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

LP16634.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG42370-RA 1968 CG42370-RA 1..1968 1..1968 9840 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6382432..6384509 2078..1 10390 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:57:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6383429..6385512 2084..1 10420 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6383429..6385512 2084..1 10420 100 Minus
Blast to na_te.dros performed on 2019-03-16 17:42:11 has no hits.

LP16634.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:43:03 Download gff for LP16634.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6382432..6384509 1..2078 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-01-25 10:43:26 Download gff for LP16634.complete
Subject Subject Range Query Range Percent Splice Strand
CG42370-RA 1..1968 1..1968 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:53:23 Download gff for LP16634.complete
Subject Subject Range Query Range Percent Splice Strand
CG42370-RA 1..1968 1..1968 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:36:48 Download gff for LP16634.complete
Subject Subject Range Query Range Percent Splice Strand
CG42370-RA 1..1968 1..1968 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:04:57 Download gff for LP16634.complete
Subject Subject Range Query Range Percent Splice Strand
CG42370-RA 1..1968 1..1968 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-25 10:43:25 Download gff for LP16634.complete
Subject Subject Range Query Range Percent Splice Strand
CG42370-RA 1..1968 1..1968 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:53:23 Download gff for LP16634.complete
Subject Subject Range Query Range Percent Splice Strand
CG42370-RA 1..1968 1..1968 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:48 Download gff for LP16634.complete
Subject Subject Range Query Range Percent Splice Strand
CG42370-RA 1..2078 1..2078 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:04:57 Download gff for LP16634.complete
Subject Subject Range Query Range Percent Splice Strand
CG42370-RA 1..2078 1..2078 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:43:03 Download gff for LP16634.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6383435..6385512 1..2078 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:43:03 Download gff for LP16634.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6383435..6385512 1..2078 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:43:03 Download gff for LP16634.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6383435..6385512 1..2078 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:48 Download gff for LP16634.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6383435..6385512 1..2078 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:29:40 Download gff for LP16634.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6383435..6385512 1..2078 100   Minus

LP16634.pep Sequence

Translation from 0 to 1967

> LP16634.pep
MWLIACLFIVPICAAPTTQNVEADPNSRLMNNILSYVAEDSSACGTYFQY
ACGKYAVRHRDDPFTEIIQMLDHKVNGNLVQLMHELHQRSQSPGFNESSV
EAKVLHFYRTCREAPPSTRKMEHYLRLAPPGQALTWPQFMPRGEPWPKAQ
FKWMKSLGHLYRYGFTNVLVNVLVLRSSENSNRFRLDISMPSLEGDAQHL
GGFLSTLATLQIIGVPTKSILPLVRKIRRLESAIRVLTEVDDDDESETWT
LRQWEYKTGYAWQGFVESIVGHSVSHHYVMQAQNAKYFTGLKRLMDSTDA
EVVANYIMTRFVLYLIDDFIDSNEHIDCVTDMRRNMNLASNLLYKERFLD
PATLQQYTQEVTKVFEQLRRQFLLQINENRLGLTSEQNSMVATKAQHVVL
NIGNLPRGRDHRSFVSRHYEDLVFPLPDFDYAREHLNLLEFRTRKQVLQL
NQSAPTPDEFFYLSDPKTAMSSGPYYLMRLNIIVVPHGLLQEPFFAADSH
DIFKYSLLGFVLAHELMHSVDTVGLYYDRYGNIHEIGPQISSSPRFVAGL
QCLNRNSTQYLDERIADIAGLDLAYSTYFQNSSQMSLTDFTTIPPQQIFF
LNLAQFFCGDGDPINFVGHDNDETRLQQMLNGFAPFHEAFGCPAKSNQPE
KCQLW*

LP16634.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15392-PA 656 GF15392-PA 1..656 1..655 1773 50.6 Plus
Dana\GF16985-PA 671 GF16985-PA 23..671 5..655 1132 36.2 Plus
Dana\GF14519-PA 682 GF14519-PA 36..682 29..655 579 26.1 Plus
Dana\GF15285-PA 584 GF15285-PA 44..556 79..612 516 28 Plus
Dana\GF15284-PA 564 GF15284-PA 25..529 85..605 511 27.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11194-PA 644 GG11194-PA 32..644 23..655 748 30.4 Plus
Dere\GG10409-PA 692 GG10409-PA 9..692 2..655 592 27.1 Plus
Dere\GG24319-PA 619 GG24319-PA 79..581 95..610 533 30.4 Plus
Dere\GG10407-PA 652 GG10407-PA 28..652 11..655 406 24.5 Plus
Dere\GG20308-PA 632 GG20308-PA 22..618 23..655 406 24.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13261-PA 678 GH13261-PA 52..678 22..655 1214 42.5 Plus
Dgri\GH25251-PA 658 GH25251-PA 27..658 22..655 1202 41.9 Plus
Dgri\GH13639-PA 635 GH13639-PA 4..635 12..655 1108 38.5 Plus
Dgri\GH10747-PA 713 GH10747-PA 29..713 15..655 572 25.4 Plus
Dgri\GH21315-PA 613 GH21315-PA 6..609 7..655 488 25.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Nepl6-PA 655 CG9508-PA 1..655 1..655 3472 100 Plus
Nepl8-PA 619 CG4580-PA 1..619 1..654 1368 41.7 Plus
Nepl5-PA 684 CG9507-PA 9..684 2..655 633 27.3 Plus
Nepl3-PA 629 CG31918-PA 24..601 23..615 567 28.5 Plus
Nepl10-PA 633 CG8550-PA 1..619 4..655 433 24.3 Plus
Nepl4-PA 652 CG9505-PA 43..652 26..655 410 25 Plus
frma-PG 611 CG3239-PG 239..611 295..655 350 27.4 Plus
frma-PF 611 CG3239-PF 239..611 295..655 350 27.4 Plus
Nepl21-PC 707 CG14526-PC 26..707 12..655 259 22 Plus
Nep4-PC 978 CG4058-PC 380..978 101..655 253 22.8 Plus
Nep4-PB 978 CG4058-PB 380..978 101..655 253 22.8 Plus
Nep4-PA 1040 CG4058-PA 442..1040 101..655 253 22.8 Plus
Nepl17-PA 681 CG14529-PA 49..681 35..655 251 22.9 Plus
Nep1-PD 849 CG5905-PD 180..849 28..655 248 22 Plus
Nep1-PC 849 CG5905-PC 180..849 28..655 248 22 Plus
Nep1-PA 849 CG5905-PA 180..849 28..655 248 22 Plus
Nep1-PB 849 CG5905-PB 180..849 28..655 248 22 Plus
Nepl20-PA 700 CG14527-PA 8..700 1..655 228 21.8 Plus
Nepl15-PA 686 CG4721-PA 52..686 39..655 224 21.8 Plus
Nep3-PC 786 CG9565-PC 576..786 468..655 223 31.9 Plus
Nep3-PB 786 CG9565-PB 576..786 468..655 223 31.9 Plus
Nep3-PA 786 CG9565-PA 576..786 468..655 223 31.9 Plus
Nepl12-PA 702 CG8358-PA 62..702 35..655 222 21.5 Plus
Nep6-PB 655 CG3775-PB 43..655 44..655 219 23.2 Plus
Nep6-PA 655 CG3775-PA 43..655 44..655 219 23.2 Plus
Nepl7-PB 669 CG15485-PB 44..669 33..655 189 20.1 Plus
Nepl7-PA 669 CG15485-PA 44..669 33..655 189 20.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17503-PA 863 GI17503-PA 222..863 17..655 1380 43 Plus
Dmoj\GI11574-PA 689 GI11574-PA 36..689 29..655 624 26.2 Plus
Dmoj\GI10579-PA 669 GI10579-PA 34..669 26..655 505 28.4 Plus
Dmoj\GI19748-PA 582 GI19748-PA 1..575 30..655 457 25 Plus
Dmoj\GI17505-PA 662 GI17505-PA 52..662 26..655 362 23.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26263-PA 958 GL26263-PA 293..958 1..655 1821 51.6 Plus
Dper\GL25525-PA 676 GL25525-PA 7..676 3..655 636 26.6 Plus
Dper\GL10114-PA 919 GL10114-PA 44..598 44..623 439 27.1 Plus
Dper\GL26265-PA 648 GL26265-PA 28..648 14..655 320 23.6 Plus
Dper\GL27139-PA 1049 GL27139-PA 449..1049 99..655 269 23.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28099-PA 956 GA28099-PA 293..956 1..655 1815 51.4 Plus
Dpse\GA21842-PA 676 GA21842-PA 7..676 3..655 636 26.6 Plus
Dpse\GA21158-PA 634 GA21158-PA 44..631 44..655 482 27 Plus
Dpse\GA21840-PA 648 GA21840-PA 28..648 14..655 335 23.8 Plus
Dpse\GA26744-PA 1045 GA26744-PA 445..1045 99..655 272 23.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17944-PA 948 GM17944-PA 294..948 1..655 3211 89.2 Plus
Dsec\GM26493-PA 661 GM26493-PA 33..661 24..655 1044 36 Plus
Dsec\GM17180-PA 335 GM17180-PA 1..324 1..333 756 40.8 Plus
Dsec\GM18625-PA 684 GM18625-PA 9..684 2..655 576 27.2 Plus
Dsec\GM17181-PA 202 GM17181-PA 4..202 449..655 479 46.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22581-PA 948 GD22581-PA 294..948 1..655 3223 89.3 Plus
Dsim\GD24059-PA 638 GD24059-PA 1..638 1..655 1535 43.7 Plus
Dsim\GD21007-PA 658 GD21007-PA 10..658 4..655 1053 36.7 Plus
Dsim\GD23407-PA 684 GD23407-PA 9..684 2..655 602 27.2 Plus
Dsim\GD10892-PA 633 GD10892-PA 5..619 1..655 420 23.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12871-PA 699 GJ12871-PA 29..699 15..655 602 26.1 Plus
Dvir\GJ22936-PA 666 GJ22936-PA 14..666 1..655 515 26.6 Plus
Dvir\GJ15205-PA 650 GJ15205-PA 4..650 1..655 389 23.3 Plus
Dvir\GJ19503-PA 650 GJ19503-PA 16..638 21..642 303 23.8 Plus
Dvir\GJ24401-PA 687 GJ24401-PA 10..687 1..655 251 24 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15358-PA 952 GK15358-PA 303..952 7..655 1476 43.4 Plus
Dwil\GK14758-PA 685 GK14758-PA 36..685 29..655 619 27.6 Plus
Dwil\GK12098-PA 679 GK12098-PA 6..679 7..655 480 25.3 Plus
Dwil\GK18887-PA 635 GK18887-PA 42..630 42..655 422 24.6 Plus
Dwil\GK15360-PA 646 GK15360-PA 26..646 14..655 321 22.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18448-PA 676 GE18448-PA 22..676 1..655 2886 79.1 Plus
Dyak\GE13111-PA 637 GE13111-PA 1..637 1..655 1538 44 Plus
Dyak\GE10361-PA 662 GE10361-PA 10..662 4..655 1038 34.1 Plus
Dyak\GE13846-PA 688 GE13846-PA 9..688 2..655 592 27.4 Plus
Dyak\GE18699-PA 620 GE18699-PA 79..598 95..615 540 29.7 Plus

LP16634.hyp Sequence

Translation from 1 to 1967

> LP16634.hyp
MWLIACLFIVPICAAPTTQNVEADPNSRLMNNILSYVAEDSSACGTYFQY
ACGKYAVRHRDDPFTEIIQMLDHKVNGNLVQLMHELHQRSQSPGFNESSV
EAKVLHFYRTCREAPPSTRKMEHYLRLAPPGQALTWPQFMPRGEPWPKAQ
FKWMKSLGHLYRYGFTNVLVNVLVLRSSENSNRFRLDISMPSLEGDAQHL
GGFLSTLATLQIIGVPTKSILPLVRKIRRLESAIRVLTEVDDDDESETWT
LRQWEYKTGYAWQGFVESIVGHSVSHHYVMQAQNAKYFTGLKRLMDSTDA
EVVANYIMTRFVLYLIDDFIDSNEHIDCVTDMRRNMNLASNLLYKERFLD
PATLQQYTQEVTKVFEQLRRQFLLQINENRLGLTSEQNSMVATKAQHVVL
NIGNLPRGRDHRSFVSRHYEDLVFPLPDFDYAREHLNLLEFRTRKQVLQL
NQSAPTPDEFFYLSDPKTAMSSGPYYLMRLNIIVVPHGLLQEPFFAADSH
DIFKYSLLGFVLAHELMHSVDTVGLYYDRYGNIHEIGPQISSSPRFVAGL
QCLNRNSTQYLDERIADIAGLDLAYSTYFQNSSQMSLTDFTTIPPQQIFF
LNLAQFFCGDGDPINFVGHDNDETRLQQMLNGFAPFHEAFGCPAKSNQPE
KCQLW*

LP16634.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG42370-PA 655 CG9508-PA 1..655 1..655 3472 100 Plus
CG4580-PA 619 CG4580-PA 1..619 1..654 1368 41.7 Plus
CG9507-PA 684 CG9507-PA 9..684 2..655 633 27.3 Plus
CG31918-PA 629 CG31918-PA 24..601 23..615 567 28.5 Plus
CG8550-PA 633 CG8550-PA 1..619 4..655 433 24.3 Plus