Clone LP16783 Report

Search the DGRC for LP16783

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:167
Well:83
Vector:pOT2
Associated Gene/TranscriptCG5043-RA
Protein status:LP16783.pep: gold
Sequenced Size:1751

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5043 2003-01-01 Sim4 clustering to Release 3
CG5043 2004-10-25 Blastp of sequenced clone
CG5043 2008-04-29 Release 5.5 accounting
CG5043 2008-08-15 Release 5.9 accounting
CG5043 2008-12-18 5.12 accounting

Clone Sequence Records

LP16783.complete Sequence

1751 bp (1751 high quality bases) assembled on 2004-10-25

GenBank Submission: BT016056

> LP16783.complete
ATTCGTCTTGAGCAATATACAAAAGTTCTTGTCAGCTTCATCGTTTCTTT
ACAAGTTAAAAAATTTTATTTTTCTCAGTATGTTTCCGAAAAGTCCACGA
ATTCGCCAGGTCAACCAGGCTGGTTTGACCAGAATCCCTCAGAAGGGATC
GCCCAGAACCCTTTACTCCAAATCACTTCTTTCTGCACAGGCAAAGAAGC
GCCGCATTTTGGGACAGCGGAACTTGAAGAAGGATAATGCCTCAGTAGAC
AAAAACAAGCAACAGTTGCAAAAAATACCCGAGACGGGCCTACTCACACC
CTCCTCCTCGGACAACTCCTTGACCACCACAGGGTCTAGCTCTGGCCAAT
CTAGCTGTTCGGCTATGGCAAAGACCAGTTTGCTCCGAGAGCCCACCTCC
TTGACCCCCTATTTGACTCTCAAGCGTCAGCAGACCTCGACATTGATTAA
TTTTCGGGTGCGCAAATCGCTTTCTCAAATGGATTTCAAGGAGGCGCGTC
GCACGGGAAACTATCAGTTGGTGGCCCATGTGGGATCGCCCAGAAAGTCT
GTTCAGCAAATGTCGCAGAAAGTCGATGGCGATTTGGGATTGGAGGCCAA
TATGGCCAAGTTGCTGCTTCAGGACAATGCACTAATTGAAGGTGAGATGA
GCTTTGTGGTCGGTCCAGATCAGGATGCCCGAGTGGCCAGCTTGAGAATC
TTTAACACCATTATGCTACACGCTTGGCGCAGGAGGCGGGAGGAGGTTCG
TCAGCTGACCGATCAGGTGGAGGACTACAAGAAAAGTTTGGTTAAAAATC
GCAACCAATTGCATGTCTACAATTCGCTCTTCTCCGTGGAGAAGCGTCGC
AATGAAACCTTAAATGATCAGCTTAGGCAGTCCTATCGCGAAAATGCTCA
GACGAAACTCTCCTACGAGGAACTAAATGCCGTGCTGGTGCAGATCAGAA
ACGAAAAGGAGAAGCTTGCCGAAGAGGTGGCAACCAAGGATCGGGATATT
GAGAATCTCCAGGAAATGCAGCAGCAACTGAAGAGCGAACTCTTTCAGGT
GCATGGCCAACAGGGACAGCAGCTTGAGGAGTTGACCCGGTTGCAGCGCG
AGTACCAGGAGAGCCAAACCGCTCAGGATGAACTGCTCCGCCAACTGAAT
CTGCTCCGAATCGAACTGGCCCTTAAGAGTGACTTTGTTGACCAGTTACG
CGACAGCTTGGCCAAAGTGCAGGATCTCAAGCGGGGATCTGATGAGCAGT
TCAGCAAATTGCTTGAACAAACGTTAAAACTAGAGCAAGCGATCGCAGAA
AAGGAGGAGCAACTGGTTACCCTCCAGAATTGCTTGGCCGCCACCTTGGG
CCAAAGGATTCGCCAATGCTTCGCCCAAAGTCAGGCCTATCAGCATGCCA
CCTATCGCATGCTGCACTTTGTAGCCCACTATATGCTACCAGGTACTCCG
CCTCCAGGACCTTCGCTTCCAGGAGCCGTTAACAGGCTGAAGGGCTTTTT
TGTACGCGGCTCGCAAAATGAATTGAACAATGAAGATAGTTTTAAAGATC
TTCAGGAGGGCGACAAAGGCAAAGATTAGGAAAAATGCACCTAAAAGTTA
TTTTTATTTTGTTGTTTATTGTTCATATTTTTTGTTTAGACTTGCAATTT
TTCTTTGTGATTTATATTGCTCCTTAAATCATTTTTGATTGTATTGTTCG
AAATATGAAATAAATAATATTTAATAAAAAAAAAAAAAAAAAAAAAAAAA
A

LP16783.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5043-RA 1793 CG5043-RA 69..1793 1..1725 8595 99.8 Plus
CG5043.a 1753 CG5043.a 34..1753 1..1725 8495 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 17432841..17433387 241..787 2720 99.8 Plus
chr2L 23010047 chr2L 17433971..17434443 1253..1725 2350 99.8 Plus
chr2L 23010047 chr2L 17433446..17433912 788..1254 2335 100 Plus
chr2L 23010047 chr2L 17432538..17432777 1..240 1200 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:57:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17434198..17434744 241..787 2720 99.8 Plus
2L 23513712 2L 17435328..17435806 1253..1731 2380 99.8 Plus
2L 23513712 2L 17434803..17435269 788..1254 2335 100 Plus
2L 23513712 2L 17433895..17434134 1..240 1200 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17434198..17434744 241..787 2720 99.8 Plus
2L 23513712 2L 17435328..17435806 1253..1731 2380 99.7 Plus
2L 23513712 2L 17434803..17435269 788..1254 2335 100 Plus
2L 23513712 2L 17433895..17434134 1..240 1200 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:59:24 has no hits.

LP16783.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:00:02 Download gff for LP16783.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 17432538..17432777 1..240 100 -> Plus
chr2L 17432841..17433387 241..787 99 -> Plus
chr2L 17433446..17433912 788..1254 100 -> Plus
chr2L 17433973..17434419 1255..1701 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:43:10 Download gff for LP16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 1..1500 80..1579 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:29:20 Download gff for LP16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 1..1500 80..1579 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:41:38 Download gff for LP16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 1..1500 80..1579 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:13:16 Download gff for LP16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 1..1500 80..1579 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:28:20 Download gff for LP16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 1..1500 80..1579 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:33:12 Download gff for LP16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 34..1612 1..1579 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:29:20 Download gff for LP16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 34..1758 1..1725 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:41:38 Download gff for LP16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 34..1758 1..1725 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:13:17 Download gff for LP16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 34..1612 1..1579 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:28:20 Download gff for LP16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 34..1758 1..1725 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:00:02 Download gff for LP16783.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17433895..17434134 1..240 100 -> Plus
2L 17434198..17434744 241..787 99 -> Plus
2L 17434803..17435269 788..1254 100 -> Plus
2L 17435330..17435800 1255..1725 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:00:02 Download gff for LP16783.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17433895..17434134 1..240 100 -> Plus
2L 17434198..17434744 241..787 99 -> Plus
2L 17434803..17435269 788..1254 100 -> Plus
2L 17435330..17435800 1255..1725 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:00:02 Download gff for LP16783.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17433895..17434134 1..240 100 -> Plus
2L 17434198..17434744 241..787 99 -> Plus
2L 17434803..17435269 788..1254 100 -> Plus
2L 17435330..17435800 1255..1725 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:41:38 Download gff for LP16783.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17433895..17434134 1..240 100 -> Plus
arm_2L 17434198..17434744 241..787 99 -> Plus
arm_2L 17434803..17435269 788..1254 100 -> Plus
arm_2L 17435330..17435800 1255..1725 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:49:57 Download gff for LP16783.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17433895..17434134 1..240 100 -> Plus
2L 17434198..17434744 241..787 99 -> Plus
2L 17434803..17435269 788..1254 100 -> Plus
2L 17435330..17435800 1255..1725 99   Plus

LP16783.hyp Sequence

Translation from 0 to 1578

> LP16783.hyp
FVLSNIQKFLSASSFLYKLKNFIFLSMFPKSPRIRQVNQAGLTRIPQKGS
PRTLYSKSLLSAQAKKRRILGQRNLKKDNASVDKNKQQLQKIPETGLLTP
SSSDNSLTTTGSSSGQSSCSAMAKTSLLREPTSLTPYLTLKRQQTSTLIN
FRVRKSLSQMDFKEARRTGNYQLVAHVGSPRKSVQQMSQKVDGDLGLEAN
MAKLLLQDNALIEGEMSFVVGPDQDARVASLRIFNTIMLHAWRRRREEVR
QLTDQVEDYKKSLVKNRNQLHVYNSLFSVEKRRNETLNDQLRQSYRENAQ
TKLSYEELNAVLVQIRNEKEKLAEEVATKDRDIENLQEMQQQLKSELFQV
HGQQGQQLEELTRLQREYQESQTAQDELLRQLNLLRIELALKSDFVDQLR
DSLAKVQDLKRGSDEQFSKLLEQTLKLEQAIAEKEEQLVTLQNCLAATLG
QRIRQCFAQSQAYQHATYRMLHFVAHYMLPGTPPPGPSLPGAVNRLKGFF
VRGSQNELNNEDSFKDLQEGDKGKD*

LP16783.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5043-PA 499 CG5043-PA 1..499 27..525 2499 100 Plus
CG5050-PB 327 CG5050-PB 33..193 224..384 236 31.1 Plus
CG5050-PA 327 CG5050-PA 33..193 224..384 236 31.1 Plus
CG12693-PB 425 CG12693-PB 124..384 213..456 210 24.5 Plus

LP16783.pep Sequence

Translation from 79 to 1578

> LP16783.pep
MFPKSPRIRQVNQAGLTRIPQKGSPRTLYSKSLLSAQAKKRRILGQRNLK
KDNASVDKNKQQLQKIPETGLLTPSSSDNSLTTTGSSSGQSSCSAMAKTS
LLREPTSLTPYLTLKRQQTSTLINFRVRKSLSQMDFKEARRTGNYQLVAH
VGSPRKSVQQMSQKVDGDLGLEANMAKLLLQDNALIEGEMSFVVGPDQDA
RVASLRIFNTIMLHAWRRRREEVRQLTDQVEDYKKSLVKNRNQLHVYNSL
FSVEKRRNETLNDQLRQSYRENAQTKLSYEELNAVLVQIRNEKEKLAEEV
ATKDRDIENLQEMQQQLKSELFQVHGQQGQQLEELTRLQREYQESQTAQD
ELLRQLNLLRIELALKSDFVDQLRDSLAKVQDLKRGSDEQFSKLLEQTLK
LEQAIAEKEEQLVTLQNCLAATLGQRIRQCFAQSQAYQHATYRMLHFVAH
YMLPGTPPPGPSLPGAVNRLKGFFVRGSQNELNNEDSFKDLQEGDKGKD*

LP16783.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14796-PA 518 GF14796-PA 1..491 1..480 1553 65.9 Plus
Dana\GF14797-PA 339 GF14797-PA 40..276 202..421 237 30.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21087-PA 504 GG21087-PA 1..499 1..499 2214 84.6 Plus
Dere\GG21089-PA 334 GG21089-PA 42..197 203..358 204 32.7 Plus
Dere\GG18545-PA 426 GG18545-PA 136..348 197..398 180 27.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11703-PA 504 GH11703-PA 1..482 1..474 1003 47.3 Plus
Dgri\GH11704-PA 233 GH11704-PA 21..162 186..331 159 29.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5043-PA 499 CG5043-PA 1..499 1..499 2499 100 Plus
CG5050-PB 327 CG5050-PB 33..193 198..358 236 31.1 Plus
CG5050-PA 327 CG5050-PA 33..193 198..358 236 31.1 Plus
CG12693-PB 425 CG12693-PB 124..384 187..430 210 24.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16060-PA 522 GI16060-PA 1..508 1..478 1132 51.9 Plus
Dmoj\GI16071-PA 347 GI16071-PA 61..273 201..396 184 30.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19365-PA 524 GL19365-PA 1..467 1..453 1156 52.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18616-PA 524 GA18616-PA 1..467 1..453 1163 53.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17238-PA 500 GM17238-PA 1..495 1..499 2360 92 Plus
Dsec\GM17240-PA 322 GM17240-PA 32..316 202..457 192 25.3 Plus
Dsec\GM12690-PA 418 GM12690-PA 127..318 197..377 152 26.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24109-PA 500 GD24109-PA 1..495 1..499 2340 92.2 Plus
Dsim\GD24110-PA 322 GD24110-PA 32..316 202..457 192 24.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16190-PA 518 GJ16190-PA 1..513 1..487 1211 52.5 Plus
Dvir\GJ16191-PA 269 GJ16191-PA 45..169 176..300 184 33.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10526-PA 439 GK10526-PA 4..435 4..457 543 33.2 Plus
Dwil\GK10591-PA 311 GK10591-PA 5..302 183..454 223 27.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12792-PA 504 GE12792-PA 1..499 1..499 2238 85.4 Plus
Dyak\GE12793-PA 330 GE12793-PA 37..324 202..457 214 27.3 Plus
Dyak\GE16860-PA 426 GE16860-PA 136..348 197..398 169 26.3 Plus