Clone LP17834 Report

Search the DGRC for LP17834

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:178
Well:34
Vector:pOT2
Associated Gene/TranscriptCG9331-RA
Protein status:LP17834.pep: gold
Sequenced Size:1243

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9331-RA 2009-06-22 Replacement based on scoring

Clone Sequence Records

LP17834.complete Sequence

1243 bp assembled on 2009-08-12

GenBank Submission: BT099559.1

> LP17834.complete
CTTCGATCGCAATACTTCGAGATGAGATCGATTGCCACCAACTCCCTGCT
GCCACTGATTGTGGCCTTGCTGATCGCCGGTAGTAATGCCTCCCTCCCAC
GCAGGGGCAGCAGAAATCAAAGCCAGAATCGCACCATGTCCGCTGGCAAG
GCTTTCAAGGTCCTGGTGACACATCCCGAGGTTCCCCAGGAGGGCATTGA
TCTGCTGAAGGAGAACTGCGAGATCGTCCAGGTGCAGAGTGTTCCCATCA
ACCGGGCGGAGCTGCTGGAGAAAATCCGTGGCGTGGATGGCGTTCTCTGG
GGTGGACACGAACCCCTCAATGCCGAGGCCCTCGATGCTGCCGGTCCCCA
GCTGAAATCCATCTCCACCATGTCGGCGGGAATCGACTACGTCGATGTGC
CGGAGGTAAAGAGACGTAAGATCCCGCTGGGACACACGCCCACCGTTCTC
AACACCGCCGTGGCCGATTTGGCAGTGGGTCTCCTGATCGCCGCCAGTCG
CCGTTTTCACGAGGGTCGCAAGACCATCGACAATGACAAGTGGGAAAACT
ACCATCTTAACTGGCTGTTGGGCCAGGATATTCGTGATTCCACCGTGGGA
TTCTACGGCTTTGGAGGCATTGGTCAGGCTATTGCCAAGCGTTTGTCTGG
ATTCGACATTGACAAGGTGCTGTACACCACCCGTCGTCGTGTTCACAAGG
AGATCGAGGAGGAGTTCAATGCCAAGAAAGTTGACTTCGATACCCTTCTG
GCCGAGAGTGACTTCGTAGTGATCGCTTCTCCTTTGACGAAGGACACACA
GGGCGTCTTTAATGCCACCGCCTTCAACAAGATGAAGCAGACTGCTGTGC
TGGTTAACATTGCCAGGGGCAAAATCGTCAACCAGGATGACCTCTACGAG
GCTTTGAAAGCCAACCGAATCTTTTCCGCCGGACTCGACGTCACGGATCC
GGAACCATTGTCGCCCAAGGACAAGCTGCTGACGCTTGACAATGTTGTTG
TCCTGCCCCATATTGGATCCGCCACGAAGCGCACCCGTGCCGACATGTCC
ACCATTGCTGCCCATAATGTGCTCCGCGGTTTGGCTGGGGAGCCCATGTT
GTCGCCCGCCTACTAGTAAATTCAAATGGGAAATATGGCTTTCTACCGCT
AACCAGTTTGGAATGTCCGCCAAACAAAGTGCGAAAGGCCGCCGATGACC
TTGGCATGCCAGTAGATGTGAAAATAAAAAAAAAAAAAAAAAA

LP17834.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9331.m 1534 CG9331.m 290..1532 1..1243 6170 99.7 Plus
CG9331.b 1440 CG9331.b 129..1371 1..1243 6170 99.7 Plus
CG9331-RA 1422 CG9331-RA 111..1353 1..1243 6170 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20824061..20824593 1..533 2635 99.6 Plus
chr2L 23010047 chr2L 20825139..20825476 534..871 1675 99.7 Plus
chr2L 23010047 chr2L 20826002..20826230 997..1225 1130 99.6 Plus
chr2L 23010047 chr2L 20825538..20825663 872..997 630 100 Plus
chr2L 23010047 chr2L 20830452..20830793 530..871 585 78.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:57:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20825555..20826087 1..533 2665 100 Plus
2L 23513712 2L 20826633..20826970 534..871 1690 100 Plus
2L 23513712 2L 20827496..20827742 997..1243 1190 98.8 Plus
2L 23513712 2L 20827032..20827157 872..997 630 100 Plus
2L 23513712 2L 20831946..20832287 530..871 570 77.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20825555..20826087 1..533 2665 100 Plus
2L 23513712 2L 20826633..20826970 534..871 1690 100 Plus
2L 23513712 2L 20827496..20827742 997..1243 1190 98.7 Plus
2L 23513712 2L 20827032..20827157 872..997 630 100 Plus
2L 23513712 2L 20831946..20832076 530..660 340 83.9 Plus
2L 23513712 2L 20832092..20832287 676..871 290 76.5 Plus
Blast to na_te.dros performed on 2019-03-16 02:19:11 has no hits.

LP17834.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:19:58 Download gff for LP17834.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20824061..20824593 1..533 99 -> Plus
chr2L 20825139..20825476 534..871 99 -> Plus
chr2L 20825538..20825663 872..997 100 -> Plus
chr2L 20826003..20826230 998..1225 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:13:48 Download gff for LP17834.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RA 1..1095 22..1116 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:58:07 Download gff for LP17834.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RA 1..1095 22..1116 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:44:22 Download gff for LP17834.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RA 1..1095 22..1116 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:05:26 Download gff for LP17834.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RA 1..1095 22..1116 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-12 16:15:15 Download gff for LP17834.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RA 21..1245 1..1225 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:58:07 Download gff for LP17834.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RG 143..1367 1..1225 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:44:22 Download gff for LP17834.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RA 20..1244 1..1225 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:05:26 Download gff for LP17834.complete
Subject Subject Range Query Range Percent Splice Strand
CG9331-RA 20..1244 1..1225 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:58 Download gff for LP17834.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20827497..20827724 998..1225 100   Plus
2L 20825555..20826087 1..533 100 -> Plus
2L 20826633..20826970 534..871 100 -> Plus
2L 20827032..20827157 872..997 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:58 Download gff for LP17834.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20827497..20827724 998..1225 100   Plus
2L 20825555..20826087 1..533 100 -> Plus
2L 20826633..20826970 534..871 100 -> Plus
2L 20827032..20827157 872..997 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:58 Download gff for LP17834.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20827497..20827724 998..1225 100   Plus
2L 20825555..20826087 1..533 100 -> Plus
2L 20826633..20826970 534..871 100 -> Plus
2L 20827032..20827157 872..997 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:44:22 Download gff for LP17834.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20825555..20826087 1..533 100 -> Plus
arm_2L 20826633..20826970 534..871 100 -> Plus
arm_2L 20827032..20827157 872..997 100 -> Plus
arm_2L 20827497..20827724 998..1225 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:49:44 Download gff for LP17834.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20825555..20826087 1..533 100 -> Plus
2L 20826633..20826970 534..871 100 -> Plus
2L 20827032..20827157 872..997 100 -> Plus
2L 20827497..20827724 998..1225 100   Plus

LP17834.hyp Sequence

Translation from 0 to 1115

> LP17834.hyp
LRSQYFEMRSIATNSLLPLIVALLIAGSNASLPRRGSRNQSQNRTMSAGK
AFKVLVTHPEVPQEGIDLLKENCEIVQVQSVPINRAELLEKIRGVDGVLW
GGHEPLNAEALDAAGPQLKSISTMSAGIDYVDVPEVKRRKIPLGHTPTVL
NTAVADLAVGLLIAASRRFHEGRKTIDNDKWENYHLNWLLGQDIRDSTVG
FYGFGGIGQAIAKRLSGFDIDKVLYTTRRRVHKEIEEEFNAKKVDFDTLL
AESDFVVIASPLTKDTQGVFNATAFNKMKQTAVLVNIARGKIVNQDDLYE
ALKANRIFSAGLDVTDPEPLSPKDKLLTLDNVVVLPHIGSATKRTRADMS
TIAAHNVLRGLAGEPMLSPAY*

LP17834.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9331-PL 364 CG9331-PL 1..364 8..371 1842 100 Plus
CG9331-PA 364 CG9331-PA 1..364 8..371 1842 100 Plus
CG9331-PI 364 CG9331-PI 32..364 39..371 1698 100 Plus
CG9331-PH 364 CG9331-PH 32..364 39..371 1698 100 Plus
CG9331-PM 364 CG9331-PM 32..364 39..371 1698 100 Plus

LP17834.pep Sequence

Translation from 0 to 1115

> LP17834.pep
LRSQYFEMRSIATNSLLPLIVALLIAGSNASLPRRGSRNQSQNRTMSAGK
AFKVLVTHPEVPQEGIDLLKENCEIVQVQSVPINRAELLEKIRGVDGVLW
GGHEPLNAEALDAAGPQLKSISTMSAGIDYVDVPEVKRRKIPLGHTPTVL
NTAVADLAVGLLIAASRRFHEGRKTIDNDKWENYHLNWLLGQDIRDSTVG
FYGFGGIGQAIAKRLSGFDIDKVLYTTRRRVHKEIEEEFNAKKVDFDTLL
AESDFVVIASPLTKDTQGVFNATAFNKMKQTAVLVNIARGKIVNQDDLYE
ALKANRIFSAGLDVTDPEPLSPKDKLLTLDNVVVLPHIGSATKRTRADMS
TIAAHNVLRGLAGEPMLSPAY*

LP17834.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20908-PA 361 GF20908-PA 22..361 32..371 1624 88.2 Plus
Dana\GF20930-PA 327 GF20930-PA 1..327 46..371 1259 70.9 Plus
Dana\GF20919-PA 324 GF20919-PA 4..324 50..371 963 52 Plus
Dana\GF16345-PA 325 GF16345-PA 7..321 54..368 671 46.8 Plus
Dana\GF15130-PA 332 GF15130-PA 39..295 87..346 217 22.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21256-PA 364 GG21256-PA 32..364 39..371 1739 97.3 Plus
Dere\GG21258-PA 327 GG21258-PA 1..327 46..371 1297 73.7 Plus
Dere\GG21257-PA 326 GG21257-PA 4..326 48..371 961 53.5 Plus
Dere\GG13007-PA 325 GG13007-PA 6..319 53..366 679 47 Plus
Dere\GG10320-PA 332 GG10320-PA 7..307 53..358 226 22.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10587-PA 356 GH10587-PA 20..356 33..371 1457 79.9 Plus
Dgri\GH10588-PA 325 GH10588-PA 1..325 46..371 993 55.7 Plus
Dgri\GH18259-PA 324 GH18259-PA 6..319 53..366 649 46.3 Plus
Dgri\GH13534-PA 332 GH13534-PA 14..295 61..346 230 24 Plus
Dgri\CtBP-PA 492 GH18368-PA 92..341 118..363 194 26.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9331-PL 364 CG9331-PL 1..364 8..371 1842 100 Plus
CG9331-PA 364 CG9331-PA 1..364 8..371 1842 100 Plus
CG9331-PI 364 CG9331-PI 32..364 39..371 1698 100 Plus
CG9331-PH 364 CG9331-PH 32..364 39..371 1698 100 Plus
CG9331-PM 364 CG9331-PM 32..364 39..371 1698 100 Plus
CG9331-PC 364 CG9331-PC 32..364 39..371 1698 100 Plus
CG9331-PK 326 CG9331-PK 1..326 46..371 1662 100 Plus
CG9331-PJ 326 CG9331-PJ 1..326 46..371 1662 100 Plus
CG9331-PG 326 CG9331-PG 1..326 46..371 1662 100 Plus
CG9331-PF 326 CG9331-PF 1..326 46..371 1662 100 Plus
CG9331-PB 326 CG9331-PB 1..326 46..371 1662 100 Plus
CG9331-PD 326 CG9331-PD 1..326 46..371 1662 100 Plus
CG31674-PB 327 CG31674-PB 1..327 46..371 1251 73.1 Plus
CG31674-PA 327 CG31674-PA 1..327 46..371 1251 73.1 Plus
CG31673-PA 326 CG31673-PA 4..326 48..371 912 52.9 Plus
CG31673-PB 325 CG31673-PB 4..325 48..371 896 52.6 Plus
CG1236-PA 347 CG1236-PA 28..343 53..368 728 47 Plus
CG6287-PA 332 CG6287-PA 7..307 53..358 237 23.1 Plus
CtBP-PI 379 CG7583-PI 92..338 118..363 186 26.8 Plus
CtBP-PF 383 CG7583-PF 92..338 118..363 186 26.8 Plus
CtBP-PA 386 CG7583-PA 92..341 118..363 186 26.7 Plus
CtBP-PB 386 CG7583-PB 92..341 118..363 186 26.7 Plus
CtBP-PD 386 CG7583-PD 92..341 118..363 186 26.7 Plus
CtBP-PC 386 CG7583-PC 92..341 118..363 186 26.7 Plus
CtBP-PG 473 CG7583-PG 92..338 118..363 186 26.8 Plus
CtBP-PJ 476 CG7583-PJ 92..338 118..363 186 26.8 Plus
CtBP-PE 476 CG7583-PE 92..341 118..363 186 26.7 Plus
CtBP-PH 481 CG7583-PH 92..338 118..363 186 26.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23165-PA 401 GI23165-PA 22..401 28..371 1336 66.6 Plus
Dmoj\GI23143-PA 357 GI23143-PA 34..357 47..371 1061 63.1 Plus
Dmoj\GI23154-PA 352 GI23154-PA 34..352 48..371 980 58 Plus
Dmoj\GI23658-PA 324 GI23658-PA 7..319 54..366 657 46.2 Plus
Dmoj\GI18148-PA 332 GI18148-PA 14..295 61..346 232 24.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18523-PA 362 GL18523-PA 24..362 31..371 1613 87.7 Plus
Dper\GL18524-PA 330 GL18524-PA 11..330 51..371 971 55.3 Plus
Dper\GL24519-PA 304 GL24519-PA 6..300 53..368 540 41.3 Plus
Dper\GL18582-PA 332 GL18582-PA 14..295 61..346 231 24 Plus
Dper\CtBP-PA 482 GL24381-PA 92..341 118..363 194 26.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21708-PA 362 GA21708-PA 24..362 31..371 1609 87.7 Plus
Dpse\GA16384-PA 330 GA16384-PA 11..330 51..371 970 55 Plus
Dpse\GA11580-PA 325 GA11580-PA 6..319 53..366 617 44.4 Plus
Dpse\GA19489-PA 332 GA19489-PA 14..295 61..346 231 24 Plus
Dpse\GA20456-PC 382 GA20456-PC 92..341 118..363 194 26.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23374-PA 364 GM23374-PA 32..364 39..371 1762 99.1 Plus
Dsec\GM23376-PA 327 GM23376-PA 1..327 46..371 1296 73.1 Plus
Dsec\GM10835-PA 325 GM10835-PA 6..319 53..366 672 47 Plus
Dsec\GM23375-PA 180 GM23375-PA 1..180 190..371 517 52.7 Plus
Dsec\GM11122-PA 332 GM11122-PA 7..307 53..358 231 23.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24283-PA 364 GD24283-PA 32..364 39..371 1762 99.1 Plus
Dsim\GD24286-PA 327 GD24286-PA 1..327 46..371 1299 73.4 Plus
Dsim\GD24284-PA 326 GD24284-PA 4..326 48..371 949 52.9 Plus
Dsim\GD19816-PA 307 GD19816-PA 15..301 79..366 627 47.9 Plus
Dsim\GD22186-PA 332 GD22186-PA 7..307 53..358 228 22.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23653-PA 359 GJ23653-PA 2..359 10..371 1459 79.7 Plus
Dvir\GJ23664-PA 325 GJ23664-PA 1..325 46..371 922 55.4 Plus
Dvir\GJ23501-PA 324 GJ23501-PA 7..319 54..366 703 46.5 Plus
Dvir\GJ14930-PA 332 GJ14930-PA 14..295 61..346 223 23.3 Plus
Dvir\CtBP-PA 502 GJ10351-PA 92..341 118..363 194 26.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15435-PA 326 GK15435-PA 1..326 46..371 1541 86.5 Plus
Dwil\GK15437-PA 329 GK15437-PA 3..329 47..371 1193 67.6 Plus
Dwil\GK15436-PA 326 GK15436-PA 3..326 47..371 979 54.3 Plus
Dwil\GK13923-PA 324 GK13923-PA 6..318 54..366 735 46.2 Plus
Dwil\GK15239-PA 332 GK15239-PA 14..307 61..358 236 22.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12350-PA 364 GE12350-PA 32..364 39..371 1732 96.7 Plus
Dyak\GE12352-PA 327 GE12352-PA 1..327 46..371 1300 73.7 Plus
Dyak\GE12351-PA 326 GE12351-PA 4..326 48..371 984 54.5 Plus
Dyak\GE10159-PA 325 GE10159-PA 6..319 53..366 694 47.9 Plus
Dyak\GE12961-PA 332 GE12961-PA 4..307 50..358 232 23.2 Plus