Clone LP18168 Report

Search the DGRC for LP18168

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:181
Well:68
Vector:pOT2
Associated Gene/TranscriptLcp3-RA
Protein status:LP18168.pep: gold
Sequenced Size:552

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2043 2003-01-01 Sim4 clustering to Release 3
CG2043 2004-01-31 Blastp of sequenced clone
Lcp3 2008-04-29 Release 5.5 accounting
Lcp3 2008-08-15 Release 5.9 accounting
Lcp3 2008-12-18 5.12 accounting

Clone Sequence Records

LP18168.complete Sequence

552 bp (552 high quality bases) assembled on 2004-01-31

GenBank Submission: BT011538

> LP18168.complete
AAGATTTCTAGTCCGACAATCCACCCAAATCAAAATGTTCAAGATCCTGC
TTGTCTGTTCTCTCGCCGCCCTGGTGGCCGCCAACGCTAATGTGGAGGTC
AAGGAGCTGGTCAACGATGTCCAGCCCGATGGCTTTGTCAGCAAGTTGGT
CCTCGACGACGGATCTGCCTCCTCCGCCACCGGAGACATCCACGGCAACA
TCGACGGAGTCTTCGAGTGGATCTCCCCCGAGGGTGTCCATGTGCGAGTG
AGCTACAAGGCTGACGAGAACGGATACCAGCCCCAGAGTGACCTGCTGCC
CACTCCTCCTCCGATCCCAGCTGCCATCCTGAAGGCTATCGCCTACATCG
AGGCTAACCCCAGCAAGAACTAAGTGAACCCGCCGACTAGGAACATGAAA
GATTGGAGACAGCTAGGTTGAGTTTGGATAATTTCTTACCAGTTGTTTTA
AATTTAAGGAAAATGTTATCGAATTCGAAAATAAATTAAACCTTGCAATA
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAA
AA

LP18168.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp3-RA 653 Lcp3-RA 146..649 1..504 2520 100 Plus
Lcp4-RA 690 Lcp4-RA 14..379 9..374 1065 86 Plus
Cpr67Fa1-RA 666 Cpr67Fa1-RA 373..444 259..330 240 88.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4323083..4323540 47..504 2290 100 Plus
chr2R 21145070 chr2R 4325291..4325618 47..374 935 85.7 Plus
chr3L 24539361 chr3L 10881504..10881575 259..330 240 88.9 Plus
chr2R 21145070 chr2R 4322981..4323026 1..46 230 100 Plus
chr3L 24539361 chr3L 10883302..10883373 259..330 210 86.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:57:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8435557..8436014 47..504 2290 100 Plus
2R 25286936 2R 8437765..8438092 47..374 935 85.7 Plus
3L 28110227 3L 10890454..10890525 259..330 240 88.9 Plus
2R 25286936 2R 8435455..8435500 1..46 230 100 Plus
3L 28110227 3L 10892254..10892325 259..330 210 86.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8436756..8437213 47..504 2290 100 Plus
2R 25260384 2R 8438964..8439291 47..374 935 85.6 Plus
3L 28103327 3L 10883554..10883625 259..330 240 88.8 Plus
2R 25260384 2R 8436654..8436699 1..46 230 100 Plus
3L 28103327 3L 10885354..10885425 259..330 210 86.1 Plus
Blast to na_te.dros performed 2019-03-15 16:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 10..63 478..531 117 68.5 Plus
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 307..362 476..531 109 66.1 Plus

LP18168.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:17:22 Download gff for LP18168.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4322981..4323026 1..46 100 -> Plus
chr2R 4323083..4323537 47..501 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:43:25 Download gff for LP18168.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RA 1..339 35..373 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:40:45 Download gff for LP18168.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RA 1..339 35..373 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:58:13 Download gff for LP18168.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RA 1..339 35..373 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:29:36 Download gff for LP18168.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RA 1..339 35..373 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:31:42 Download gff for LP18168.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RA 1..339 35..373 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:49:50 Download gff for LP18168.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RA 12..512 1..501 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:40:45 Download gff for LP18168.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RA 12..512 1..501 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:13 Download gff for LP18168.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RB 146..646 1..501 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:29:36 Download gff for LP18168.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RA 12..512 1..501 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:31:42 Download gff for LP18168.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp3-RB 146..646 1..501 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:22 Download gff for LP18168.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8435455..8435500 1..46 100 -> Plus
2R 8435557..8436011 47..501 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:22 Download gff for LP18168.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8435455..8435500 1..46 100 -> Plus
2R 8435557..8436011 47..501 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:22 Download gff for LP18168.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8435455..8435500 1..46 100 -> Plus
2R 8435557..8436011 47..501 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:13 Download gff for LP18168.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4322960..4323005 1..46 100 -> Plus
arm_2R 4323062..4323516 47..501 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:02:00 Download gff for LP18168.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8436756..8437210 47..501 100   Plus
2R 8436654..8436699 1..46 100 -> Plus

LP18168.hyp Sequence

Translation from 0 to 372

> LP18168.hyp
RFLVRQSTQIKMFKILLVCSLAALVAANANVEVKELVNDVQPDGFVSKLV
LDDGSASSATGDIHGNIDGVFEWISPEGVHVRVSYKADENGYQPQSDLLP
TPPPIPAAILKAIAYIEANPSKN*

LP18168.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp3-PB 112 CG2043-PB 1..112 12..123 573 100 Plus
Lcp3-PA 112 CG2043-PA 1..112 12..123 573 100 Plus
Lcp4-PB 112 CG2044-PB 1..111 12..122 512 88.3 Plus
Lcp4-PA 112 CG2044-PA 1..111 12..122 512 88.3 Plus
Lcp1-PB 130 CG11650-PB 1..121 12..120 281 46.3 Plus

LP18168.pep Sequence

Translation from 34 to 372

> LP18168.pep
MFKILLVCSLAALVAANANVEVKELVNDVQPDGFVSKLVLDDGSASSATG
DIHGNIDGVFEWISPEGVHVRVSYKADENGYQPQSDLLPTPPPIPAAILK
AIAYIEANPSKN*

LP18168.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12355-PA 112 GF12355-PA 1..112 1..112 476 92 Plus
Dana\GF12356-PA 112 GF12356-PA 1..111 1..111 449 86.5 Plus
Dana\GF12590-PA 130 GF12590-PA 1..121 1..109 310 48.8 Plus
Dana\GF12589-PA 128 GF12589-PA 27..119 17..109 261 50.5 Plus
Dana\GF10617-PA 121 GF10617-PA 1..114 1..109 202 41.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23356-PA 112 GG23356-PA 1..111 1..111 479 80.2 Plus
Dere\GG23355-PA 112 GG23355-PA 1..112 1..112 475 94.6 Plus
Dere\GG10645-PA 130 GG10645-PA 1..121 1..109 279 43.8 Plus
Dere\GG15456-PA 134 GG15456-PA 1..117 1..109 228 40.2 Plus
Dere\GG15458-PA 134 GG15458-PA 1..117 1..109 225 39.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20994-PA 124 GH20994-PA 1..120 1..112 308 50.8 Plus
Dgri\GH20893-PA 265 GH20893-PA 146..259 5..110 269 45.6 Plus
Dgri\GH16085-PA 131 GH16085-PA 20..117 14..110 229 50 Plus
Dgri\GH20812-PA 117 GH20812-PA 1..101 1..104 208 43 Plus
Dgri\GH20699-PA 126 GH20699-PA 2..118 3..109 184 38.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp3-PB 112 CG2043-PB 1..112 1..112 573 100 Plus
Lcp3-PA 112 CG2043-PA 1..112 1..112 573 100 Plus
Lcp4-PB 112 CG2044-PB 1..111 1..111 512 88.3 Plus
Lcp4-PA 112 CG2044-PA 1..111 1..111 512 88.3 Plus
Lcp1-PB 130 CG11650-PB 1..121 1..109 281 46.3 Plus
Lcp1-PA 130 CG11650-PA 1..121 1..109 281 46.3 Plus
Lcp2-PB 126 CG8697-PB 1..117 1..109 269 46.2 Plus
Lcp2-PA 126 CG8697-PA 1..117 1..109 269 46.2 Plus
Cpr67Fa1-PA 134 CG7941-PA 1..117 1..109 230 43.6 Plus
Cpr67Fa2-PA 134 CG18349-PA 1..117 1..109 228 42.7 Plus
Cpr78Cc-PA 119 CG7658-PA 1..116 1..109 208 43.2 Plus
Cpr65Ea-PA 127 CG8640-PA 1..113 1..110 186 40 Plus
Cpr67Fb-PA 122 CG18348-PA 1..114 1..109 185 40.4 Plus
Cpr49Aa-PB 144 CG30045-PB 60..129 41..109 183 50 Plus
Cpr47Eg-PA 117 CG9070-PA 3..114 2..109 181 40.7 Plus
Edg78E-PB 122 CG7673-PB 1..113 1..109 172 33.3 Plus
Edg78E-PA 122 CG7673-PA 1..113 1..109 172 33.3 Plus
Cpr65Ec-PA 127 CG8634-PA 4..118 2..111 165 33.9 Plus
Cpr65Eb-PA 179 CG8638-PA 27..124 17..112 163 36.7 Plus
Cpr49Af-PB 126 CG8510-PB 50..120 42..111 155 43.7 Plus
Cpr49Af-PA 126 CG8510-PA 50..120 42..111 155 43.7 Plus
Cpr49Ae-PA 134 CG8505-PA 13..129 5..109 151 34.2 Plus
Cpr65Az-PA 239 CG12330-PA 161..211 57..107 147 52.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20906-PA 117 GI20906-PA 1..115 1..112 310 55.7 Plus
Dmoj\GI20905-PA 121 GI20905-PA 1..114 1..109 276 47.4 Plus
Dmoj\GI20904-PA 119 GI20904-PA 1..114 1..109 271 45.6 Plus
Dmoj\GI20903-PA 122 GI20903-PA 1..117 1..109 270 46.2 Plus
Dmoj\GI18692-PA 144 GI18692-PA 43..130 22..109 256 54.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22414-PA 112 GL22414-PA 1..111 1..111 402 77.5 Plus
Dper\GL20440-PA 112 GL20440-PA 1..111 1..111 402 77.5 Plus
Dper\GL11219-PA 112 GL11219-PA 1..111 1..111 401 76.6 Plus
Dper\GL10863-PA 126 GL10863-PA 1..118 1..110 286 50.8 Plus
Dper\GL10864-PA 137 GL10864-PA 1..109 1..91 212 40.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15201-PA 112 GA15201-PA 1..111 1..111 401 76.6 Plus
Dpse\GA24647-PA 112 GA24647-PA 1..111 1..111 401 76.6 Plus
Dpse\GA21266-PA 126 GA21266-PA 1..117 1..109 297 52.1 Plus
Dpse\GA24514-PA 138 GA24514-PA 1..127 1..109 278 43.3 Plus
Dpse\GA21230-PA 127 GA21230-PA 61..113 58..110 194 62.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21030-PA 112 GM21030-PA 1..112 1..112 567 98.2 Plus
Dsec\GM21031-PA 112 GM21031-PA 1..111 1..111 515 88.3 Plus
Dsec\GM20690-PA 130 GM20690-PA 1..121 1..109 287 44.6 Plus
Dsec\GM20688-PA 126 GM20688-PA 1..117 1..109 266 42.7 Plus
Dsec\GM25234-PA 122 GM25234-PA 1..114 1..109 187 39.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10559-PA 112 GD10559-PA 1..112 1..112 563 97.3 Plus
Dsim\GD10560-PA 112 GD10560-PA 1..111 1..111 461 90.1 Plus
Dsim\GD22274-PA 112 GD22274-PA 1..111 1..111 461 90.1 Plus
Dsim\GD10171-PA 130 GD10171-PA 1..121 1..109 290 45.5 Plus
Dsim\GD14266-PA 116 GD14266-PA 11..116 5..108 208 41.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20637-PA 117 GJ20637-PA 1..114 1..111 341 58.8 Plus
Dvir\GJ20634-PA 126 GJ20634-PA 1..117 1..109 281 47 Plus
Dvir\GJ20635-PA 117 GJ20635-PA 1..114 6..111 255 44.7 Plus
Dvir\GJ21708-PA 131 GJ21708-PA 30..122 17..109 244 49.5 Plus
Dvir\GJ21116-PA 156 GJ21116-PA 22..137 1..111 238 42.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21499-PA 114 GK21499-PA 1..112 1..112 371 69.6 Plus
Dwil\GK21498-PA 112 GK21498-PA 1..111 1..111 350 73 Plus
Dwil\GK21497-PA 112 GK21497-PA 1..110 1..112 302 67.9 Plus
Dwil\GK21815-PA 129 GK21815-PA 1..123 1..112 287 43.1 Plus
Dwil\GK21874-PA 192 GK21874-PA 72..181 4..111 199 40.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19198-PA 112 GE19198-PA 1..111 1..111 504 85.6 Plus
Dyak\GE19197-PA 112 GE19197-PA 1..112 1..112 429 95.5 Plus
Dyak\GE19195-PA 112 GE19195-PA 1..112 1..112 429 95.5 Plus
Dyak\GE23045-PA 130 GE23045-PA 1..122 1..110 272 43.4 Plus
Dyak\GE23024-PA 126 GE23024-PA 1..117 1..109 259 41.9 Plus