Clone LP18465 Report

Search the DGRC for LP18465

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:184
Well:65
Vector:pOT2
Associated Gene/TranscriptIntS2-RA
Protein status:LP18465.pep: gold
Sequenced Size:3711

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8211 2003-01-01 Sim4 clustering to Release 3
CG8211 2004-10-04 Blastp of sequenced clone
CG8211 2008-04-29 Release 5.5 accounting
CG8211 2008-08-15 Release 5.9 accounting
CG8211 2008-12-18 5.12 accounting

Clone Sequence Records

LP18465.complete Sequence

3711 bp (3711 high quality bases) assembled on 2004-10-04

GenBank Submission: BT016049

> LP18465.complete
ATGAGAGCACCTCTCCAACTGGCCACACTGACGTGTGTTGATTTTTTGGA
TGCGGATCGCAGTGGATTCTCGGATTCTCCGGCATTCCCTGCCCCAACTA
CAGATCGCCGAGATTAAAGCAGACCCGCGCCGGCATCTCCAGCACGGACA
CCCCGCCGGCCAGGCCAATAGAGCGGGACAACCGAGCACACGAGCATTGC
CGGGTGCAACAAGTTGGAACGCAACGACAACGACGACGAGGACAAAATGC
CGGTGAGGATGTACGATGTATCGCCGCGCGTTTTCTGCGCCATGCAGAAT
CTGGACATCACCCTGCTGGCCAGCTATCCGGAGGCGGAGATTCGGCCCGT
GCTGCCCTCGCTGGTGCGGATGAGCCTGCTATCGCCACTGGACAACACCG
AATCGTCGATGGAGTCGCGCAAAGAGATCCTGGCCGTGCTCATCGGCATC
GAGGTGGTGAACAGCATCGTCTCCTACCTGCAAGTCAACTACCATGAGCT
GGAGAATGAGCTGAAGAAGGAGCTGCAGGCCCGCCAGAAGTCGGCCTTCT
TCGAGGGACAGCAACACGAGTACGGCCTCCAGTCGGGCATCGCACTGGGC
TTTGAGCGGGCGGATGTGGCGCGCAAGGTGCGCGTGGTGCTCTCCGAGAT
CTTCAATCTGCAGCAGCAGGTCTCCGAGCAGAAACCGGCCGCCCATTCGG
AGATGCTGGACGACGGCATCTATCTGGAGGAGGTGGTCGACATTCTGTGC
ATTGCTCTCGCCGAGCTGCCCTCCCTGCTGAACATACTGGAGCTAACGGA
CGCCCTTGTCCATGTGCCCAACGGACATCGCATCATCTGCGCACTGGTCG
CCAACTTTCCGGATTGCTATCGCGACGTTGTGTCCCATGTGATCGCCAAT
TGCGACGAGGATGGCAGCGATGGCAAGCACCGGTTAATGCTGCTCATGGG
GCTCAGCGAGATGAATCCCTCCCAGGCGCTGGCCAACAGGTCCATGTGCG
TGGATATGCTGAAGGTGCCGTCGTTTATGCTTAAGCTCACGCTCAAGCAT
CCCGAGGATCTGATAGCCTTCCTCACGGGCCTGCTGCTGGGCAATGACCA
GAATCTGCGCTCCTGGTTCGCCGCTTACATCCGCTCCAGCCAGAAGCGGA
AGGGGGACGCACTGAATCTGGTGCGCGTGGAGCTGCTACAGAAGGTGATT
CAAACGACGACCAATGCGGCGGAGCTGCGCGACTTCAATCTGCAGGGCGC
GGTGCTGCTGCGTCTGTACTGTGCCCTGCGCGGCATCGGTGGCCTGAAGT
TCAACGACGACGAGATCAATGCTCTGTCGCAGCTGGTCACGAGTTGTCCG
CAGGCGACGCCCTCGGGCGTGAGATTTGTAACGCTGGCGCTGTGCATGCT
CATCGCCTGTCCCTCGCTGGTGTCCACCATTCCACTGGAGAACAAGGCTG
TGGAGTGGCTGCAGTGGCTCATACGGGAGGATGCCTTTTTCTGCAAGCGC
CCCGGTACTAGCACCTCGCTGGGTGAGATGCTCCTGCTTCTGGCCATTCA
CTTTCACAGCAATCAGATCTCGGCCATCAGCGAGATGGTCTGCTCCACGC
TGGCCATGAAGATACCCATCCGGCCGAACAGTACAAACAGAATCAAGCAG
CTCTTCACACAGGACCTGTTCACGGAGCAGGTGGTGGCGCTGCATGCGGT
TCGCGTACCCGTCACTCCGAATTTAAATGGCACCATACTGTGCTACCTGC
CGGTGCACTGCATCCAGCAACTGCTGAAATCGAGGACATTTCTCAAGCAC
AAAGTGCCCATTAAGTCGTGGATCTTCAAGCAAATATGCAGTTCGGTGAG
GCCAGTGCATCCTGTGATGCCGGCCCTGGTGGAGGTCTTTGTCAACACGC
TGATAATACCCAATCCCACCGGAAAAGTGAATATTGATCACATGCACCGG
CCCTTCACTGAGGCGGAAATTCTGCACGTGTTCCGCACATCCAAGCTCAC
ATTCTTCGCCGAGGAGCTGCCACCGATGGCGGAAAGTCAGGAGCTCAACC
AGATCGAGGTGACGTGTCCACTAACCGCCCAGCTGCTGATGATCTACTAC
CTCATGTTGTACGAGGATACGCGACTGATGAACCTCAGCGCTTTGGGTGG
TCGCAAGCAGAAGGAGTACTCCAACAACTTCCTGGGCGGACTGCCACTGA
AGTATCTGCTCCAGAAGGCGCACCACTACCACAACGACTATCTCTCGCTC
TTCCATCCGCTGCTGCGTTTGATTATCTCCAACTATCCGCATCTCAGCAT
GGTCGATGACTGGCTGGAGGAGCACAATCTGGCCCAGGGCAATTCCACGG
TGGTGGTAAGCAAGCATGAGCTCAAGCCGGAGACCCTGGATCGTGCACTG
GCCGCCATCCAAACGAAACCGCATCTAGCCATCCGCGTGTTTAAGCAGCT
ACTCCAGATGCCCCCAGAAACGCAGGCGCAGTATGGACAACAGCTGGTGA
AGCATCTGCCGATGGTGTTTGCCAAGTCGGTGCCGCGATACGTCAAGGAT
CTGTACAACGATATTTGGCTGCGCCTGAATGCCGTGCTGCCCACCACCCT
GTGGATCATGTCGCTGCGAGCGATTACCAACGGCTCGGATACGATGGATC
GACGTACCTTTGCCAACGAGAGTCTTCTGGAGCCCATGGAGGTGCTAAGT
TGTCCACGCTTCGTATTCTGTTCGCCCTATTTGCTGATGATCCTGCTGCG
CATTCTGAAGGGCAGCCTAGCCGCCTCGAAGACCTATCTCAACGTGCACA
TGCAGATGCAGCAGAAGCAGGTGCTGGACAAGAATGGCATGATGCAGACG
GATGCGATTTGGGAGGACCTAAGGACCACGCTGATTGCCTCGCAGGAGAG
CGCCGCCGTGCACATTCTGCTGGAGGTGCTGGACTACATAGCCAGCAAGG
CAACGGATCGGGTGTCGCATCTGGAGCTGCGTGAGATACAGGGCATCATT
GGCACCTATGTGCATCAGGCATTCATTTCGGAGCCTTCGCTGGCGAAACT
AGTGCACTTCCAAACGTATCCAAAGTCGGTTATTCCCATGATGGTGGCCA
GTGTGCCATCGATGCACATATGCATTGATTTTGTTCACGAATTCCTCAAC
GTGACGGAAATGGAAAAACAGATCTTTACCATCGATCTGACCTCCCATCT
GGTGCTCAACTATTCGATACCCAAGAGTCTGGGCGTCTCGAAATTCTGCC
TGAATGTAATCCAGACGACGTTGTCCATGCTGACCGCATCGACCAAGTGT
AGATTCCTGCGCAATGTGATGCCAGCGATGGTTCGTTTCGTGGAAACGTT
TCCCATTCTGGCCGACGACTGCGTCAACATCCTGATGACCACCGGGCGCA
TTCTGCATTCGCAGTCATCGCTGGGCATGACCACAATGGAAATGCCACTC
ACCGATAGCGACAAGCTCTGCACGTATCGGGATGCCCAGCTGCACATCAT
CATGATCGAGGACGCGTTTAAGGCACTGGTCACGGCGGTCATGAAAAAAT
CGGACCTGTATTAGTTGGACTCGATCCCGCCTTGTTTTTCATAGTCGTAA
GCAACCTTTCCCCACTCCGCCCCCCGGCTGATTATAATAGTGCTTGTAAA
ATTTATAACAACATTGACCAGAATAAATACTTATTGCAAAAACCAAAAAA
AAAAAAAAAAA

LP18465.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8211-RA 3708 CG8211-RA 8..3693 10..3695 18430 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17543142..17544779 2699..1062 8175 99.9 Minus
chrX 22417052 chrX 17545103..17546155 1062..10 5220 99.7 Minus
chrX 22417052 chrX 17542081..17543077 3694..2698 4985 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:57:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17653822..17655459 2699..1062 8190 100 Minus
X 23542271 X 17655783..17656835 1062..10 5265 100 Minus
X 23542271 X 17652760..17653757 3695..2698 4990 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17661920..17663557 2699..1062 8190 100 Minus
X 23527363 X 17663881..17664933 1062..10 5265 100 Minus
X 23527363 X 17660858..17661855 3695..2698 4990 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:16:15 has no hits.

LP18465.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:17:23 Download gff for LP18465.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17542081..17543075 2700..3694 100 <- Minus
chrX 17543142..17544778 1063..2699 99 <- Minus
chrX 17545103..17546160 2..1062 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:43:28 Download gff for LP18465.complete
Subject Subject Range Query Range Percent Splice Strand
CG8211-RA 1..3318 247..3564 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:30:59 Download gff for LP18465.complete
Subject Subject Range Query Range Percent Splice Strand
CG8211-RA 1..3318 247..3564 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:58:15 Download gff for LP18465.complete
Subject Subject Range Query Range Percent Splice Strand
IntS2-RA 1..3318 247..3564 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:14:52 Download gff for LP18465.complete
Subject Subject Range Query Range Percent Splice Strand
CG8211-RA 1..3318 247..3564 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:31:43 Download gff for LP18465.complete
Subject Subject Range Query Range Percent Splice Strand
IntS2-RA 1..3318 247..3564 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:35:36 Download gff for LP18465.complete
Subject Subject Range Query Range Percent Splice Strand
CG8211-RA 1..3661 27..3687 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:30:59 Download gff for LP18465.complete
Subject Subject Range Query Range Percent Splice Strand
CG8211-RA 1..3661 27..3687 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:15 Download gff for LP18465.complete
Subject Subject Range Query Range Percent Splice Strand
IntS2-RA 1..3668 27..3694 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:14:52 Download gff for LP18465.complete
Subject Subject Range Query Range Percent Splice Strand
CG8211-RA 1..3661 27..3687 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:31:43 Download gff for LP18465.complete
Subject Subject Range Query Range Percent Splice Strand
IntS2-RA 1..3668 27..3694 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:23 Download gff for LP18465.complete
Subject Subject Range Query Range Percent Splice Strand
X 17652761..17653755 2700..3694 100 <- Minus
X 17653822..17655458 1063..2699 100 <- Minus
X 17655783..17656840 2..1062 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:23 Download gff for LP18465.complete
Subject Subject Range Query Range Percent Splice Strand
X 17652761..17653755 2700..3694 100 <- Minus
X 17653822..17655458 1063..2699 100 <- Minus
X 17655783..17656840 2..1062 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:23 Download gff for LP18465.complete
Subject Subject Range Query Range Percent Splice Strand
X 17652761..17653755 2700..3694 100 <- Minus
X 17653822..17655458 1063..2699 100 <- Minus
X 17655783..17656840 2..1062 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:15 Download gff for LP18465.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17546794..17547788 2700..3694 100 <- Minus
arm_X 17547855..17549491 1063..2699 100 <- Minus
arm_X 17549816..17550873 2..1062 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:51:44 Download gff for LP18465.complete
Subject Subject Range Query Range Percent Splice Strand
X 17660859..17661853 2700..3694 100 <- Minus
X 17661920..17663556 1063..2699 100 <- Minus
X 17663881..17664938 2..1062 99   Minus

LP18465.hyp Sequence

Translation from 246 to 3563

> LP18465.hyp
MPVRMYDVSPRVFCAMQNLDITLLASYPEAEIRPVLPSLVRMSLLSPLDN
TESSMESRKEILAVLIGIEVVNSIVSYLQVNYHELENELKKELQARQKSA
FFEGQQHEYGLQSGIALGFERADVARKVRVVLSEIFNLQQQVSEQKPAAH
SEMLDDGIYLEEVVDILCIALAELPSLLNILELTDALVHVPNGHRIICAL
VANFPDCYRDVVSHVIANCDEDGSDGKHRLMLLMGLSEMNPSQALANRSM
CVDMLKVPSFMLKLTLKHPEDLIAFLTGLLLGNDQNLRSWFAAYIRSSQK
RKGDALNLVRVELLQKVIQTTTNAAELRDFNLQGAVLLRLYCALRGIGGL
KFNDDEINALSQLVTSCPQATPSGVRFVTLALCMLIACPSLVSTIPLENK
AVEWLQWLIREDAFFCKRPGTSTSLGEMLLLLAIHFHSNQISAISEMVCS
TLAMKIPIRPNSTNRIKQLFTQDLFTEQVVALHAVRVPVTPNLNGTILCY
LPVHCIQQLLKSRTFLKHKVPIKSWIFKQICSSVRPVHPVMPALVEVFVN
TLIIPNPTGKVNIDHMHRPFTEAEILHVFRTSKLTFFAEELPPMAESQEL
NQIEVTCPLTAQLLMIYYLMLYEDTRLMNLSALGGRKQKEYSNNFLGGLP
LKYLLQKAHHYHNDYLSLFHPLLRLIISNYPHLSMVDDWLEEHNLAQGNS
TVVVSKHELKPETLDRALAAIQTKPHLAIRVFKQLLQMPPETQAQYGQQL
VKHLPMVFAKSVPRYVKDLYNDIWLRLNAVLPTTLWIMSLRAITNGSDTM
DRRTFANESLLEPMEVLSCPRFVFCSPYLLMILLRILKGSLAASKTYLNV
HMQMQQKQVLDKNGMMQTDAIWEDLRTTLIASQESAAVHILLEVLDYIAS
KATDRVSHLELREIQGIIGTYVHQAFISEPSLAKLVHFQTYPKSVIPMMV
ASVPSMHICIDFVHEFLNVTEMEKQIFTIDLTSHLVLNYSIPKSLGVSKF
CLNVIQTTLSMLTASTKCRFLRNVMPAMVRFVETFPILADDCVNILMTTG
RILHSQSSLGMTTMEMPLTDSDKLCTYRDAQLHIIMIEDAFKALVTAVMK
KSDLY*

LP18465.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
IntS2-PA 1105 CG8211-PA 1..1105 1..1105 5646 100 Plus

LP18465.pep Sequence

Translation from 246 to 3563

> LP18465.pep
MPVRMYDVSPRVFCAMQNLDITLLASYPEAEIRPVLPSLVRMSLLSPLDN
TESSMESRKEILAVLIGIEVVNSIVSYLQVNYHELENELKKELQARQKSA
FFEGQQHEYGLQSGIALGFERADVARKVRVVLSEIFNLQQQVSEQKPAAH
SEMLDDGIYLEEVVDILCIALAELPSLLNILELTDALVHVPNGHRIICAL
VANFPDCYRDVVSHVIANCDEDGSDGKHRLMLLMGLSEMNPSQALANRSM
CVDMLKVPSFMLKLTLKHPEDLIAFLTGLLLGNDQNLRSWFAAYIRSSQK
RKGDALNLVRVELLQKVIQTTTNAAELRDFNLQGAVLLRLYCALRGIGGL
KFNDDEINALSQLVTSCPQATPSGVRFVTLALCMLIACPSLVSTIPLENK
AVEWLQWLIREDAFFCKRPGTSTSLGEMLLLLAIHFHSNQISAISEMVCS
TLAMKIPIRPNSTNRIKQLFTQDLFTEQVVALHAVRVPVTPNLNGTILCY
LPVHCIQQLLKSRTFLKHKVPIKSWIFKQICSSVRPVHPVMPALVEVFVN
TLIIPNPTGKVNIDHMHRPFTEAEILHVFRTSKLTFFAEELPPMAESQEL
NQIEVTCPLTAQLLMIYYLMLYEDTRLMNLSALGGRKQKEYSNNFLGGLP
LKYLLQKAHHYHNDYLSLFHPLLRLIISNYPHLSMVDDWLEEHNLAQGNS
TVVVSKHELKPETLDRALAAIQTKPHLAIRVFKQLLQMPPETQAQYGQQL
VKHLPMVFAKSVPRYVKDLYNDIWLRLNAVLPTTLWIMSLRAITNGSDTM
DRRTFANESLLEPMEVLSCPRFVFCSPYLLMILLRILKGSLAASKTYLNV
HMQMQQKQVLDKNGMMQTDAIWEDLRTTLIASQESAAVHILLEVLDYIAS
KATDRVSHLELREIQGIIGTYVHQAFISEPSLAKLVHFQTYPKSVIPMMV
ASVPSMHICIDFVHEFLNVTEMEKQIFTIDLTSHLVLNYSIPKSLGVSKF
CLNVIQTTLSMLTASTKCRFLRNVMPAMVRFVETFPILADDCVNILMTTG
RILHSQSSLGMTTMEMPLTDSDKLCTYRDAQLHIIMIEDAFKALVTAVMK
KSDLY*

LP18465.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21164-PA 1104 GF21164-PA 1..1104 1..1105 5452 91.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18170-PA 1105 GG18170-PA 1..1105 1..1105 5680 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17593-PA 1145 GH17593-PA 20..1145 4..1105 4953 83.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
IntS2-PA 1105 CG8211-PA 1..1105 1..1105 5646 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16243-PA 1123 GI16243-PA 1..1123 1..1105 5096 85.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16006-PA 1132 GL16006-PA 30..1132 2..1105 5016 85.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20902-PA 1132 GA20902-PA 30..1132 2..1105 5016 85.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13302-PA 1105 GM13302-PA 1..1105 1..1105 5858 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17348-PA 979 GD17348-PA 1..682 1..682 3652 99.4 Plus
Dsim\GD17348-PA 979 GD17348-PA 687..979 813..1105 1471 94.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15935-PA 1117 GJ15935-PA 1..1117 1..1105 5109 86.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16204-PA 891 GK16204-PA 19..875 2..853 4093 88.9 Plus
Dwil\GK19239-PA 208 GK19239-PA 1..208 898..1105 993 87.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15580-PA 1105 GE15580-PA 1..1105 1..1105 5725 96.4 Plus