Clone LP19160 Report

Search the DGRC for LP19160

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:191
Well:60
Vector:pOT2
Associated Gene/TranscriptCG13044-RA
Protein status:LP19160.pep: gold
Sequenced Size:767

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13044 2003-01-01 Sim4 clustering to Release 3
CG13044 2005-01-26 Blastp of sequenced clone
CG13044 2008-04-29 Release 5.5 accounting
CG13044 2008-08-15 Release 5.9 accounting
CG13044 2008-12-18 5.12 accounting

Clone Sequence Records

LP19160.complete Sequence

767 bp (767 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021350

> LP19160.complete
TCTCCCTATCCAGCGACACCAGTCGAAGAAGCCAACACCACACCAATATG
TTCAAATTGTTCGTTCTCGCTGCTCTTTTGGCCGTGGCCGCCGCCAAGCC
CGGTCACCTGGCTGCTGCTCCTCTGGTCTACAGCGCTCCCGCCACCACCA
CCGTCGTCCAGGAGCCCGTTCTGGCCAAAGTGGGTGCTGTTGTGAAGAGC
GTGCCCACCGCCGTGTCCCACCAGAGCCTGACCCAGGTGCACAGCACCCC
CGTGGTGGAGGATGTGGTGGCTCCCGTGGTCAAGACCACCGCTGTCCACT
CCGCTCCCGTGTTGGCCGCCGCACCCATTGTGAAGACTTTGGCTCCCGTC
GCCTACTCTGCTCCTCTGGCCTACTCCGCCCCGGTGGCCTACTCCTCGTA
TGCCGCTCCTCTGACCTATTCCGCACCGGTGGCCTACTCGGCTCCCCTCT
CCTACGCCGCCCCAGCTCCCCTGCTGCACCACGCCCCTCTGACCTACGCC
GCTGGCTCCTGGTAATGTGGTGAGGATCGAAAGAGTTTGAACTGTGCCTT
TCTAGTTGAAAAAAAATAAGGAAATCGAAAAAAGAATAAATTAAATTGTG
AATACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

LP19160.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13044-RA 935 CG13044-RA 201..809 1..609 3045 100 Plus
CG13043-RA 645 CG13043-RA 181..275 150..244 235 83.1 Plus
CG13063-RA 646 CG13063-RA 171..298 118..245 205 77.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16292203..16292751 606..59 2680 99.6 Minus
chr3L 24539361 chr3L 16292816..16292874 59..1 295 100 Minus
chr3L 24539361 chr3L 16295271..16295413 289..150 245 79.7 Minus
chr3L 24539361 chr3L 16296506..16296633 118..245 205 77.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:58:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16302487..16303037 609..59 2755 100 Minus
3L 28110227 3L 16303102..16303160 59..1 295 100 Minus
3L 28110227 3L 16305544..16305686 289..150 245 79.7 Minus
3L 28110227 3L 16306779..16306906 118..245 205 77.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16295587..16296137 609..59 2755 100 Minus
3L 28103327 3L 16296202..16296260 59..1 295 100 Minus
3L 28103327 3L 16298692..16298786 244..150 235 83.1 Minus
3L 28103327 3L 16299879..16300006 118..245 205 77.3 Plus
Blast to na_te.dros performed on 2019-03-16 19:01:57 has no hits.

LP19160.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:02:35 Download gff for LP19160.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16292203..16292750 60..606 99 <- Minus
chr3L 16292816..16292874 1..59 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:43:37 Download gff for LP19160.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 1..468 48..515 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:12:23 Download gff for LP19160.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 1..468 48..515 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:43 Download gff for LP19160.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 1..468 48..515 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:56:57 Download gff for LP19160.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 1..468 48..515 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:38 Download gff for LP19160.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 1..468 48..515 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:07:04 Download gff for LP19160.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 1..605 1..605 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:12:22 Download gff for LP19160.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 1..605 1..605 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:43 Download gff for LP19160.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 19..624 1..606 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:56:57 Download gff for LP19160.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 1..605 1..605 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:38 Download gff for LP19160.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 19..624 1..606 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:02:35 Download gff for LP19160.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16302490..16303036 60..606 100 <- Minus
3L 16303102..16303160 1..59 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:02:35 Download gff for LP19160.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16302490..16303036 60..606 100 <- Minus
3L 16303102..16303160 1..59 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:02:35 Download gff for LP19160.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16302490..16303036 60..606 100 <- Minus
3L 16303102..16303160 1..59 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:43 Download gff for LP19160.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16295590..16296136 60..606 100 <- Minus
arm_3L 16296202..16296260 1..59 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:32:16 Download gff for LP19160.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16295590..16296136 60..606 100 <- Minus
3L 16296202..16296260 1..59 100   Minus

LP19160.hyp Sequence

Translation from 0 to 522

> LP19160.hyp
LPIQRHQSKKPTPHQYVQIVRSRCSFGRGRRQARSPGCCSSGLQRSRHHH
RRPGARSGQSGCCCEERAHRRVPPEPDPGAQHPRGGGCGGSRGQDHRCPL
RSRVGRRTHCEDFGSRRLLCSSGLLRPGGLLLVCRSSDLFRTGGLLGSPL
LRRPSSPAAPRPSDLRRWLLVMW*
Sequence LP19160.hyp has no blast hits.

LP19160.pep Sequence

Translation from 47 to 514

> LP19160.pep
MFKLFVLAALLAVAAAKPGHLAAAPLVYSAPATTTVVQEPVLAKVGAVVK
SVPTAVSHQSLTQVHSTPVVEDVVAPVVKTTAVHSAPVLAAAPIVKTLAP
VAYSAPLAYSAPVAYSSYAAPLTYSAPVAYSAPLSYAAPAPLLHHAPLTY
AAGSW*

LP19160.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10299-PA 158 GF10299-PA 1..158 1..155 487 80.9 Plus
Dana\GF24178-PA 138 GF24178-PA 1..136 1..132 328 63.6 Plus
Dana\GF10298-PA 145 GF10298-PA 1..145 1..155 273 59.2 Plus
Dana\GF10297-PA 112 GF10297-PA 1..90 1..99 220 52 Plus
Dana\GF24181-PA 136 GF24181-PA 1..136 1..145 194 46.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13471-PA 155 GG13471-PA 1..155 1..155 705 98.7 Plus
Dere\GG15982-PA 129 GG15982-PA 1..127 1..146 232 55.1 Plus
Dere\GG13469-PA 117 GG13469-PA 1..90 1..99 229 54.9 Plus
Dere\GG13470-PA 147 GG13470-PA 1..143 1..138 214 55.3 Plus
Dere\GG15985-PA 136 GG15985-PA 1..133 1..131 187 43.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15610-PA 166 GH15610-PA 1..166 1..155 303 68.2 Plus
Dgri\GH15608-PA 163 GH15608-PA 1..163 1..155 290 58.6 Plus
Dgri\GH15877-PA 123 GH15877-PA 1..120 1..125 201 43.3 Plus
Dgri\GH15606-PA 114 GH15606-PA 1..114 1..145 197 44.1 Plus
Dgri\GH15607-PA 111 GH15607-PA 1..101 1..121 188 50.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13044-PA 155 CG13044-PA 1..155 1..155 767 100 Plus
CG13043-PA 148 CG13043-PA 1..148 1..155 374 60.8 Plus
CG13063-PA 129 CG13063-PA 1..127 1..146 340 56.5 Plus
CG13041-PA 124 CG13041-PA 1..121 1..131 264 50 Plus
CG13060-PA 131 CG13060-PA 1..127 1..150 261 47.3 Plus
CG13042-PA 117 CG13042-PA 1..109 1..119 245 50 Plus
CG12519-PB 131 CG12519-PB 1..130 1..143 191 42.5 Plus
CG12519-PA 131 CG12519-PA 1..130 1..143 191 42.5 Plus
CG13040-PB 185 CG13040-PB 1..150 1..146 188 35.6 Plus
CG13040-PA 185 CG13040-PA 1..150 1..146 188 35.6 Plus
CG32213-PB 129 CG32213-PB 1..128 1..143 182 38.9 Plus
825-Oak-PB 129 CG32208-PB 1..128 1..143 179 38.3 Plus
CG18294-PA 141 CG18294-PA 1..140 1..143 174 40.4 Plus
CG32214-PC 116 CG32214-PC 1..115 1..143 171 40.7 Plus
CG32214-PB 116 CG32214-PB 1..115 1..143 171 40.7 Plus
CG14096-PA 122 CG14096-PA 1..111 1..124 168 43.7 Plus
CG13047-PB 170 CG13047-PB 1..169 1..143 164 39.4 Plus
CG13678-PA 128 CG13678-PA 1..125 1..143 161 38.1 Plus
CG13059-PA 155 CG13059-PA 1..152 1..126 161 34.8 Plus
CG34205-PA 217 CG34205-PA 24..208 3..140 159 33.7 Plus
CG13674-PB 137 CG13674-PB 10..131 9..152 158 37.6 Plus
CG13674-PA 137 CG13674-PA 10..131 9..152 158 37.6 Plus
CG14095-PA 162 CG14095-PA 1..150 1..151 157 37.8 Plus
CG13679-PB 119 CG13679-PB 10..116 9..143 156 40 Plus
Ccp84Ab-PA 221 CG1252-PA 118..221 36..145 147 41.7 Plus
CG1368-PA 186 CG1368-PA 2..146 3..140 144 38.1 Plus
Ccp84Ae-PA 208 CG1330-PA 106..202 26..140 143 37.4 Plus
Ccp84Ae-PA 208 CG1330-PA 107..203 56..155 141 41.9 Plus
CG8543-PA 219 CG8543-PA 95..192 51..152 139 45.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16886-PA 146 GI16886-PA 1..146 1..155 319 70.9 Plus
Dmoj\GI16885-PA 140 GI16885-PA 1..140 1..155 231 51.8 Plus
Dmoj\GI16883-PA 112 GI16883-PA 1..90 1..99 186 57.8 Plus
Dmoj\GI16526-PA 111 GI16526-PA 1..108 1..110 179 47.5 Plus
Dmoj\GI12653-PA 111 GI12653-PA 1..108 1..110 179 47.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18011-PA 152 GL18011-PA 1..152 1..155 449 82.2 Plus
Dper\GL17864-PA 120 GL17864-PA 1..118 1..126 261 53.8 Plus
Dper\GL17848-PA 120 GL17848-PA 1..118 1..126 259 53.8 Plus
Dper\GL17989-PA 120 GL17989-PA 1..118 1..126 254 54.6 Plus
Dper\GL18009-PA 110 GL18009-PA 1..88 1..99 211 52 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11998-PA 152 GA11998-PA 1..152 1..155 449 82.2 Plus
Dpse\GA28359-PA 120 GA28359-PA 1..118 1..126 261 53.8 Plus
Dpse\GA28511-PA 120 GA28511-PA 1..118 1..126 255 53.1 Plus
Dpse\GA28521-PA 120 GA28521-PA 1..118 1..126 251 54.3 Plus
Dpse\GA11996-PA 110 GA11996-PA 1..88 1..99 211 52 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24420-PA 155 GM24420-PA 1..155 1..155 705 98.7 Plus
Dsec\GM25614-PA 129 GM25614-PA 1..127 1..146 235 55.8 Plus
Dsec\GM24418-PA 117 GM24418-PA 1..90 1..99 226 53.9 Plus
Dsec\GM24419-PA 148 GM24419-PA 1..148 1..155 213 54.8 Plus
Dsec\GM25617-PA 136 GM25617-PA 1..133 1..110 182 41.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12490-PA 155 GD12490-PA 1..155 1..155 699 98.1 Plus
Dsim\GD14619-PA 129 GD14619-PA 1..127 1..146 237 55.8 Plus
Dsim\GD12488-PA 117 GD12488-PA 1..90 1..99 226 53.9 Plus
Dsim\GD12489-PA 148 GD12489-PA 1..148 1..155 204 53.6 Plus
Dsim\GD14622-PA 133 GD14622-PA 1..130 1..110 189 43.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12634-PA 152 GJ12634-PA 1..152 1..155 325 69.3 Plus
Dvir\GJ12633-PA 170 GJ12633-PA 1..170 1..155 263 55.6 Plus
Dvir\GJ12631-PA 123 GJ12631-PA 1..120 1..116 201 47.4 Plus
Dvir\GJ12632-PA 113 GJ12632-PA 1..102 1..121 196 49.2 Plus
Dvir\GJ12779-PA 115 GJ12779-PA 1..112 1..110 193 46.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17643-PA 148 GK17643-PA 1..148 1..155 352 66 Plus
Dwil\GK17641-PA 115 GK17641-PA 1..92 1..99 227 49 Plus
Dwil\GK17642-PA 147 GK17642-PA 1..143 1..126 204 54.3 Plus
Dwil\GK16560-PA 128 GK16560-PA 1..75 1..85 187 55.3 Plus
Dwil\GK16556-PA 131 GK16556-PA 1..129 1..105 179 54.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22804-PA 155 GE22804-PA 1..155 1..155 582 95.5 Plus
Dyak\GE23097-PA 129 GE23097-PA 1..127 1..146 300 55.3 Plus
Dyak\GE23177-PA 129 GE23177-PA 1..127 1..146 237 55.8 Plus
Dyak\GE22801-PA 117 GE22801-PA 1..90 1..99 229 54.9 Plus
Dyak\GE22900-PA 148 GE22900-PA 1..144 1..138 221 56 Plus