Clone LP19328 Report

Search the DGRC for LP19328

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:193
Well:28
Vector:pOT2
Associated Gene/Transcriptscro-RB
Protein status:LP19328.pep: gold
Sequenced Size:1081

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17594 2003-01-01 Sim4 clustering to Release 3
scro 2008-04-29 Release 5.5 accounting
scro 2008-08-15 Release 5.9 accounting
scro 2008-12-18 5.12 accounting

Clone Sequence Records

LP19328.complete Sequence

1081 bp (1081 high quality bases) assembled on 2004-12-02

GenBank Submission: BT021347

> LP19328.complete
TCTTTTAAAGTACGTCCTGTTACGTCCGAAAAAAATTTAATATAATTTTG
TTTTGGGAAATTAAGGTGCATAAAAAGAAATAAAACGATAAAAGCCTACT
ACCAACTTGTAAAACAATTGTTACGCATGTCATCGCACGGCCTTGCTTAC
ACAACAAGAATTGAAAGAAAGTCTTATAGAGAACTACAAATCAATAGAGA
TCAATACTTTGTAACTGCGCCAAATGAAGAAGATTTGGTTATGAGTTTAT
CTCCAAAGGACACACTTATACATACTGCCATTTCCCAGCACCATCAAGTG
GATACTTCTACTAAATTAAATACAAACGAAACATCGACACAAAATACCGT
ATCTACAGCAGCCGCGGCAGCGGTTGCACATCACCACCACAACCTTTCTA
GTATTCACCACCTCCAAAACCTGCATAGTCAGCATCAAAGTACTTTATTT
AATAGTAATCACTCAACACCCTTTAGCGTGACCGATATCTTAAGTCCAAT
TGAAGAATCGTATCGCAAACTGGAACTGAACGGAAATCCACCATCTCCGT
TTCGATCAAACTCTAGTAGCAGCAGTATTAATTCTCCTGGAACATTAACT
ACATCAACTATGGCGAATCCGTACGCTATGGGAACCTTATATCACAGCCC
AGGTGTACAGACCTATTGCGGACCTACCGATAACCTATCTCTGGCTGGTC
ACTACACTGACATGAGAAATTCTGCATCGTGGTACGGATCAACAGCTAAC
GACCCAAGATTTGCAATTTCACGCCTAATGAGTTCATCAGCCAGTGGAAC
AATGAGTCATATGGGAAACATGAGTGGACTAGCAGCTTGCAGTGTAAGCG
ATTCAAAACCGCTACAGTTTCCTTTAGCACAAAGAAGAAAGCGAAGAGTT
TTGTTTACGCAAGCCCAGGTTGGTACTTACATCCTTAGTTTGCTACTTAA
AAAAAAAACACAAATATTTACCGAATGGAAAGAAGTCAACTTGCTACAGG
CAAAATAAAGGAAAACGTTTGCCTCGACCTGGGGAATATGTTTTAATCGG
GGAATATATTTTAAAAAAAAAAAAAAAAAAA

LP19328.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
scro-RB 1260 scro-RB 196..1260 1..1065 5325 100 Plus
scro-RC 1911 scro-RC 217..1136 1..920 4600 100 Plus
scro.a 2241 scro.a 293..1212 1..920 4600 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3LHet 2555433 chr3LHet 209153..209621 86..554 2345 100 Plus
chr3LHet 2555433 chr3LHet 217364..217659 767..1062 1480 100 Plus
chr3LHet 2555433 chr3LHet 211624..211836 554..766 1065 100 Plus
chr3LHet 2555433 chr3LHet 207675..207759 1..85 425 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:58:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 24725824..24726292 86..554 2345 100 Plus
3L 28110227 3L 24734036..24734334 767..1065 1495 100 Plus
3L 28110227 3L 24728296..24728508 554..766 1065 100 Plus
3L 28110227 3L 24724346..24724430 1..85 425 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 24718924..24719392 86..554 2345 100 Plus
3L 28103327 3L 24727136..24727434 767..1065 1495 100 Plus
3L 28103327 3L 24721396..24721608 554..766 1065 100 Plus
3L 28103327 3L 24717446..24717530 1..85 425 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:36:30 has no hits.

LP19328.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:37:14 Download gff for LP19328.complete
Subject Subject Range Query Range Percent Splice Strand
chr3LHet 207675..207759 1..85 100 -> Plus
chr3LHet 209153..209621 86..554 100 -> Plus
chr3LHet 211625..211836 555..766 100 -> Plus
chr3LHet 217364..217659 767..1062 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:43:38 Download gff for LP19328.complete
Subject Subject Range Query Range Percent Splice Strand
scro-RB 1..882 127..1008 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:24:11 Download gff for LP19328.complete
Subject Subject Range Query Range Percent Splice Strand
scro-RB 1..882 127..1008 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:14:43 Download gff for LP19328.complete
Subject Subject Range Query Range Percent Splice Strand
scro-RB 1..882 127..1008 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:08:25 Download gff for LP19328.complete
Subject Subject Range Query Range Percent Splice Strand
scro-RB 1..882 127..1008 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:51 Download gff for LP19328.complete
Subject Subject Range Query Range Percent Splice Strand
scro-RB 1..882 127..1008 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:26:07 Download gff for LP19328.complete
Subject Subject Range Query Range Percent Splice Strand
scro-RB 1..1062 1..1062 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:24:11 Download gff for LP19328.complete
Subject Subject Range Query Range Percent Splice Strand
scro-RB 1..1062 1..1062 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:14:43 Download gff for LP19328.complete
Subject Subject Range Query Range Percent Splice Strand
scro-RB 185..1246 1..1062 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:08:25 Download gff for LP19328.complete
Subject Subject Range Query Range Percent Splice Strand
scro-RB 1..1062 1..1062 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:51 Download gff for LP19328.complete
Subject Subject Range Query Range Percent Splice Strand
scro-RB 185..1246 1..1062 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:14 Download gff for LP19328.complete
Subject Subject Range Query Range Percent Splice Strand
3L 24724346..24724430 1..85 100 -> Plus
3L 24725824..24726292 86..554 100 -> Plus
3L 24728297..24728508 555..766 100 -> Plus
3L 24734036..24734331 767..1062 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:14 Download gff for LP19328.complete
Subject Subject Range Query Range Percent Splice Strand
3L 24724346..24724430 1..85 100 -> Plus
3L 24725824..24726292 86..554 100 -> Plus
3L 24728297..24728508 555..766 100 -> Plus
3L 24734036..24734331 767..1062 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:14 Download gff for LP19328.complete
Subject Subject Range Query Range Percent Splice Strand
3L 24724346..24724430 1..85 100 -> Plus
3L 24725824..24726292 86..554 100 -> Plus
3L 24728297..24728508 555..766 100 -> Plus
3L 24734036..24734331 767..1062 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:14:43 Download gff for LP19328.complete
Subject Subject Range Query Range Percent Splice Strand
3LHet 207678..207762 1..85 100 -> Plus
3LHet 209156..209624 86..554 100 -> Plus
3LHet 211629..211840 555..766 100 -> Plus
3LHet 217368..217663 767..1062 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:44:37 Download gff for LP19328.complete
Subject Subject Range Query Range Percent Splice Strand
3L 24718924..24719392 86..554 100 -> Plus
3L 24721397..24721608 555..766 100 -> Plus
3L 24727136..24727431 767..1062 100   Plus
3L 24717446..24717530 1..85 100 -> Plus

LP19328.pep Sequence

Translation from 126 to 1007

> LP19328.pep
MSSHGLAYTTRIERKSYRELQINRDQYFVTAPNEEDLVMSLSPKDTLIHT
AISQHHQVDTSTKLNTNETSTQNTVSTAAAAAVAHHHHNLSSIHHLQNLH
SQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSSSS
INSPGTLTTSTMANPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSA
SWYGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPL
AQRRKRRVLFTQAQVGTYILSLLLKKKTQIFTEWKEVNLLQAK*

LP19328.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20558-PA 429 GF20558-PA 1..245 39..286 910 80.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16309-PA 430 GG16309-PA 1..246 39..286 1164 90.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18027-PA 467 GH18027-PA 1..281 1..286 973 74.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
scro-PB 293 CG17594-PB 1..293 1..293 1515 100 Plus
scro-PC 439 CG17594-PC 1..265 1..265 1375 100 Plus
scro-PA 468 CG17594-PA 1..265 1..265 1375 100 Plus
scro-PF 307 CG17594-PF 1..104 162..265 546 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23787-PA 466 GI23787-PA 12..280 13..286 945 73.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12355-PA 467 GL12355-PA 1..283 1..286 1042 76.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19280-PA 410 GM19280-PA 1..221 1..221 1144 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23616-PA 467 GJ23616-PA 1..281 1..286 904 72.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10842-PA 475 GK10842-PA 36..291 28..286 969 80.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11056-PA 430 GE11056-PA 1..246 39..286 1007 88.3 Plus

LP19328.hyp Sequence

Translation from 126 to 1007

> LP19328.hyp
MSSHGLAYTTRIERKSYRELQINRDQYFVTAPNEEDLVMSLSPKDTLIHT
AISQHHQVDTSTKLNTNETSTQNTVSTAAAAAVAHHHHNLSSIHHLQNLH
SQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSSSS
INSPGTLTTSTMANPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSA
SWYGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPL
AQRRKRRVLFTQAQVGTYILSLLLKKKTQIFTEWKEVNLLQAK*

LP19328.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
scro-PB 293 CG17594-PB 1..293 1..293 1515 100 Plus
scro-PC 439 CG17594-PC 1..265 1..265 1375 100 Plus
scro-PA 468 CG17594-PA 1..265 1..265 1375 100 Plus
scro-PF 307 CG17594-PF 1..104 162..265 546 100 Plus