Clone LP19442 Report

Search the DGRC for LP19442

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:194
Well:42
Vector:pOT2
Associated Gene/Transcripte-RA
Protein status:LP19442.pep: gold
Sequenced Size:3141

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3331 2003-01-01 Sim4 clustering to Release 3
CG3331 2004-10-02 Blastp of sequenced clone
e 2008-04-29 Release 5.5 accounting
e 2008-08-15 Release 5.9 accounting
e 2008-12-18 5.12 accounting

Clone Sequence Records

LP19442.complete Sequence

3141 bp (3141 high quality bases) assembled on 2004-10-02

GenBank Submission: BT016047

> LP19442.complete
CCGTTTACAAGTACATAGCACGTTGAGTTTCCCGAGTGCGTTGCAAGTTT
TTTGGGTGCCCCCCAAAATCAAAGTGAAACGCTAAGTGAAGTGACCAGAA
AAAGAAGTTTAAAGCTGGTAGACTCACTCTCTCATAGTTGAAAATATAGA
AGGAAAATCAAATTCAAGAAAAACGTGCTTAGTGTGAAACGGCCACAGAT
AAACATTTGAAAAAGGAAATCAAGAACCTGTTCAAAAAATCCAGTGTCAG
AATTTGTTATTACCCACGTTAATATATCTTCAAGATGGGTTCGCTGCCAC
AATTGTCGATCGTCAAGGGTCTGCAGCAAGACTTCGTGCCTAGAGCTCTG
CACCGCATCTTCGAGGAGCAGCAGCTGCGGCATGCCGACAAGGTGGCTCT
GATCTATCAGCCCAGCACTACGGGCCAGGGAATGGCGCCCAGTCAGAGCA
GCTACCGCCAGATGAACGAGCGTGCGAACCGGGCAGCCCGCCTCCTGGTG
GCCGAGACCCACGGCCGGTTCCTGCAGCCAAACAGCGATGGTGACTTCAT
CGTGGCTGTGTGCATGCAGCCGTCGGAGGGATTGGTCACCACACTGCTGG
CCATCTGGAAGGCTGGCGGCGCGTATTTGCCCATCGATCCCAGCTTCCCG
GCGAACCGCATTCACCACATACTGCTGGAGGCGAAGCCCACCTTGGTGAT
TCGCGACGATGACATCGACGCCGGCCGTTTCCAGGGAACTCCCACGTTAT
CCACCACCGAACTGTATGCCAAATCCCTCCAGCTGGCCGGCTCCAATCTG
CTCTCAGAGGAGATGCTGCGCGGTGGCAACGACCACATCGCCATCGTGCT
CTACACCTCGGGCAGTACGGGTGTGCCCAAGGGAGTGCGTCTGCCGCACG
AGAGCATCCTCAATCGGCTCCAGTGGCAGTGGGCGACCTTTCCGTACACC
GCCAACGAGGCGGTGAGCGTTTTCAAGACGGCCCTAACCTTCGTGGACTC
GATTGCGGAGCTATGGGGCCCGTTAATGTGTGGCCTGGCCATTCTGGTGG
TGCCCAAGGCAGTGACCAAGGATCCCCAGCGATTGGTGGCCCTGTTGGAG
CGTTATAAGATCAGGCGTCTCGTACTGGTGCCCACCCTTCTGCGCTCGTT
GCTCATGTATCTGAAGATGGAGGGAGGCGGAGCTGCTCAGAAACTGCTGT
ACAATCTCCAGATTTGGGTCTGCTCCGGAGAACCCCTATCCGTTTCCCTG
GCCAGCAGCTTCTTCGACTATTTCGATGAGGGCGTGCACCGGCTGTACAA
CTTTTACGGATCCACGGAGGTATTGGGCGATGTCACCTACTTTGCGTGCG
AGAGCAAGAAGCAACTGAGTTTGTACGATAATGTGCCCATAGGCATTCCA
CTGTCGAATACCGTGGTCTATTTGTTGGATGCCGACTATCGTCCGGTGAA
GAACGGCGAGATTGGGGAGATCTTTGCTTCGGGTCTCAACTTGGCCGCTG
GTTATGTTAACGGACGCGATCCGGAGAGGTTCTTGGAGAATCCTTTAGCT
GTGGAGAAGAAATACGCCCGTTTGTATCGCACTGGAGACTATGGATCCCT
GAAGAACGGCAGCATCATGTACGAGGGACGCACCGACTCTCAGGTGAAGA
TCCGTGGACATCGCGTCGACCTGTCCGAAGTGGAGAAGAACGTGGCCGAG
CTGCCGCTGGTGGATAAGGCCATTGTTCTGTGCTACCATGCTGGTCAGGT
GGATCAGGCTATTCTGGCCTTCGTCAAGCTGCGCGATGATGCCCCCATGG
TCACCGAGATGCAGATGGAGGCTCGTCTCAAGGACAAGCTAGCCGATTAC
ATGACGCCGCAGGTGGTCATCCTGGAGCACGTTCCATTGCTGGTCAACGG
CAAGGTGGATCGCCAGGCGCTGCTCAAAACCTATGAGACGGCCAATAACA
ACGAAGGTGACTCCAGTATCGTTCTGGACTTTGACTACTCGCAGGTTCCT
GAGGATCTAAAGCTAACGGCACGGGATCTCTTCGAGACAGTGGGCGGCGT
GATTGGACGCTCCACCAGAGCAACCCTCGCTCCGCACAGTAACTTCTATG
AGCTGGGCGGCAACTCGTTGAATTCCATTTTCACGGTGACGCTGCTGCGC
GAGAAGGGCTACAACATCGGCATTTCCGAATTCATTGCGGCCAAGAATCT
GGGCGAGATCATCGAGAAGATGGCGGCCAACCATGATGCAGTGCAGCTAG
AGGAGGAATCCTTGAATGCTTGTCCGCATCTGAAGATGGAGGCGGTGCCG
CTACGCCTGGAGCACCGCCAGGAAGTCATCGACATTATTGTGGCTAGCTT
CTATAACAAGGCCGACCTGGAGCAGTGGCTCAAGCCCGGAGTTTTGAGAA
CCGACTACAGCGATATACTGAACGATATCTGGAATGTGCTGGTGGAGCGG
GACCTAAGTTTCGTGGTCTACGATACCAACACGGATCGCATTATTGGCAC
AGCGTTGAACTTTGATGCGCGCAACGAGCCCGAGGTGGACATCAAGTCCA
AGCTACTCATTGTCTTCGAGTTTCTGGAGTTTTGCGAGGGTCCCATCAGG
GATAACTACCTGCCCAAGGGTCTCAACCAAATCCTGCACTCGTTCATGAT
GGGCACCGCCGAGAAGTTGAATCCCCGCGAGAACATCGCCTGCATGCACT
TTATGGAGCACGAGGTTCTGCGGGTGGCCCGCGAGAAGCAGTTCGCCGGC
ATCTTCACCACCAACACCAGTCCGCTGACGCAGCAGCTGGCGGATGTCTA
CCACTATAAGACGCTTCTCAACTTCCAGGTGAACGAGTACGTGCACTCCG
ACGGCAGCCGTCCATTCGGCGATGCACCGGACGAGCAGCGCGCTATTGTC
CATTGGAAGGAGGTGGGCAAATAGGACGACCACCCGGTGGACGTGTCCCC
AAACCAGATCTGCAGCGAATTTATCCCGCACCACGTATTATATAGTTAAC
TAGCATAACCTACCACCTAGTATTAGCCCTAGGCATAGTGTAACTTAGCG
AGAAGTTTCGTAAGTTTGTGTTGACTAGTTGTAAGCCTTTGATTTCCAGA
CAATTAAATACACAACAATCAATAAAAAAAAAAAAAAAAAA

LP19442.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
e-RA 3261 e-RA 60..3184 1..3125 15625 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17055712..17056837 1393..268 5630 100 Minus
chr3R 27901430 chr3R 17054620..17055391 2332..1561 3860 100 Minus
chr3R 27901430 chr3R 17053646..17054172 3123..2597 2635 100 Minus
chr3R 27901430 chr3R 17060700..17060967 268..1 1340 100 Minus
chr3R 27901430 chr3R 17054225..17054401 2600..2424 885 100 Minus
chr3R 27901430 chr3R 17055479..17055648 1560..1391 850 100 Minus
chr3R 27901430 chr3R 17054462..17054553 2424..2333 460 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:58:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21231909..21233034 1393..268 5630 100 Minus
3R 32079331 3R 21230817..21231588 2332..1561 3860 100 Minus
3R 32079331 3R 21229841..21230369 3125..2597 2645 100 Minus
3R 32079331 3R 21236895..21237162 268..1 1340 100 Minus
3R 32079331 3R 21230422..21230598 2600..2424 885 100 Minus
3R 32079331 3R 21231676..21231845 1560..1391 850 100 Minus
3R 32079331 3R 21230659..21230750 2424..2333 460 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20972740..20973865 1393..268 5630 100 Minus
3R 31820162 3R 20971648..20972419 2332..1561 3860 100 Minus
3R 31820162 3R 20970672..20971200 3125..2597 2645 100 Minus
3R 31820162 3R 20977726..20977993 268..1 1340 100 Minus
3R 31820162 3R 20971253..20971429 2600..2424 885 100 Minus
3R 31820162 3R 20972507..20972676 1560..1391 850 100 Minus
3R 31820162 3R 20971490..20971581 2424..2333 460 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:04:43 has no hits.

LP19442.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:05:49 Download gff for LP19442.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17053646..17054169 2600..3123 100 <- Minus
chr3R 17054226..17054401 2424..2599 100 <- Minus
chr3R 17054463..17054553 2333..2423 100 <- Minus
chr3R 17054620..17055391 1561..2332 100 <- Minus
chr3R 17055479..17055646 1393..1560 100 <- Minus
chr3R 17055713..17056836 269..1392 100 <- Minus
chr3R 17060700..17060967 1..268 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:31:27 Download gff for LP19442.complete
Subject Subject Range Query Range Percent Splice Strand
e-RA 1..2640 285..2924 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:49 Download gff for LP19442.complete
Subject Subject Range Query Range Percent Splice Strand
e-RA 1..2640 285..2924 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:15:17 Download gff for LP19442.complete
Subject Subject Range Query Range Percent Splice Strand
e-RA 1..2640 285..2924 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:49 Download gff for LP19442.complete
Subject Subject Range Query Range Percent Splice Strand
e-RA 1..2640 285..2924 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:36:13 Download gff for LP19442.complete
Subject Subject Range Query Range Percent Splice Strand
e-RA 17..3139 1..3123 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:31:27 Download gff for LP19442.complete
Subject Subject Range Query Range Percent Splice Strand
e-RA 17..3139 1..3123 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:49 Download gff for LP19442.complete
Subject Subject Range Query Range Percent Splice Strand
e-RA 16..3138 1..3123 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:15:18 Download gff for LP19442.complete
Subject Subject Range Query Range Percent Splice Strand
e-RA 17..3139 1..3123 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:49 Download gff for LP19442.complete
Subject Subject Range Query Range Percent Splice Strand
e-RA 16..3138 1..3123 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:05:49 Download gff for LP19442.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21236895..21237162 1..268 100   Minus
3R 21229843..21230366 2600..3123 100 <- Minus
3R 21230423..21230598 2424..2599 100 <- Minus
3R 21230660..21230750 2333..2423 100 <- Minus
3R 21230817..21231588 1561..2332 100 <- Minus
3R 21231676..21231843 1393..1560 100 <- Minus
3R 21231910..21233033 269..1392 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:05:49 Download gff for LP19442.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21236895..21237162 1..268 100   Minus
3R 21229843..21230366 2600..3123 100 <- Minus
3R 21230423..21230598 2424..2599 100 <- Minus
3R 21230660..21230750 2333..2423 100 <- Minus
3R 21230817..21231588 1561..2332 100 <- Minus
3R 21231676..21231843 1393..1560 100 <- Minus
3R 21231910..21233033 269..1392 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:05:49 Download gff for LP19442.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21236895..21237162 1..268 100   Minus
3R 21229843..21230366 2600..3123 100 <- Minus
3R 21230423..21230598 2424..2599 100 <- Minus
3R 21230660..21230750 2333..2423 100 <- Minus
3R 21230817..21231588 1561..2332 100 <- Minus
3R 21231676..21231843 1393..1560 100 <- Minus
3R 21231910..21233033 269..1392 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:49 Download gff for LP19442.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17056382..17056472 2333..2423 100 <- Minus
arm_3R 17055565..17056088 2600..3123 100 <- Minus
arm_3R 17056145..17056320 2424..2599 100 <- Minus
arm_3R 17056539..17057310 1561..2332 100 <- Minus
arm_3R 17057398..17057565 1393..1560 100 <- Minus
arm_3R 17057632..17058755 269..1392 100 <- Minus
arm_3R 17062617..17062884 1..268 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:52:12 Download gff for LP19442.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20971254..20971429 2424..2599 100 <- Minus
3R 20971491..20971581 2333..2423 100 <- Minus
3R 20970674..20971197 2600..3123 100 <- Minus
3R 20971648..20972419 1561..2332 100 <- Minus
3R 20972507..20972674 1393..1560 100 <- Minus
3R 20972741..20973864 269..1392 100 <- Minus
3R 20977726..20977993 1..268 100   Minus

LP19442.pep Sequence

Translation from 284 to 2923

> LP19442.pep
MGSLPQLSIVKGLQQDFVPRALHRIFEEQQLRHADKVALIYQPSTTGQGM
APSQSSYRQMNERANRAARLLVAETHGRFLQPNSDGDFIVAVCMQPSEGL
VTTLLAIWKAGGAYLPIDPSFPANRIHHILLEAKPTLVIRDDDIDAGRFQ
GTPTLSTTELYAKSLQLAGSNLLSEEMLRGGNDHIAIVLYTSGSTGVPKG
VRLPHESILNRLQWQWATFPYTANEAVSVFKTALTFVDSIAELWGPLMCG
LAILVVPKAVTKDPQRLVALLERYKIRRLVLVPTLLRSLLMYLKMEGGGA
AQKLLYNLQIWVCSGEPLSVSLASSFFDYFDEGVHRLYNFYGSTEVLGDV
TYFACESKKQLSLYDNVPIGIPLSNTVVYLLDADYRPVKNGEIGEIFASG
LNLAAGYVNGRDPERFLENPLAVEKKYARLYRTGDYGSLKNGSIMYEGRT
DSQVKIRGHRVDLSEVEKNVAELPLVDKAIVLCYHAGQVDQAILAFVKLR
DDAPMVTEMQMEARLKDKLADYMTPQVVILEHVPLLVNGKVDRQALLKTY
ETANNNEGDSSIVLDFDYSQVPEDLKLTARDLFETVGGVIGRSTRATLAP
HSNFYELGGNSLNSIFTVTLLREKGYNIGISEFIAAKNLGEIIEKMAANH
DAVQLEEESLNACPHLKMEAVPLRLEHRQEVIDIIVASFYNKADLEQWLK
PGVLRTDYSDILNDIWNVLVERDLSFVVYDTNTDRIIGTALNFDARNEPE
VDIKSKLLIVFEFLEFCEGPIRDNYLPKGLNQILHSFMMGTAEKLNPREN
IACMHFMEHEVLRVAREKQFAGIFTTNTSPLTQQLADVYHYKTLLNFQVN
EYVHSDGSRPFGDAPDEQRAIVHWKEVGK*

LP19442.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16040-PA 881 GF16040-PA 1..881 1..879 4564 96.5 Plus
Dana\GF12065-PA 536 GF12065-PA 110..523 117..545 161 23 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14772-PA 879 GG14772-PA 1..879 1..879 4689 99.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18948-PA 876 GH18948-PA 1..874 1..878 4402 92.7 Plus
Dgri\GH10773-PA 1064 GH10773-PA 222..648 197..632 176 24.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
e-PA 879 CG3331-PA 1..879 1..879 4529 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10839-PA 879 GI10839-PA 1..877 1..878 4343 91.2 Plus
Dmoj\GI10838-PA 879 GI10838-PA 1..876 1..877 3978 84.6 Plus
Dmoj\GI17636-PA 1065 GI17636-PA 222..566 198..548 191 26.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27165-PA 879 GL27165-PA 1..879 1..879 4508 94.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17384-PA 879 GA17384-PA 1..879 1..879 4504 94.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15090-PA 879 GM15090-PA 1..879 1..879 4673 99.1 Plus
Dsec\GM26863-PA 537 GM26863-PA 181..530 175..550 170 26.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\e-PA 879 GD19997-PA 1..879 1..879 4678 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14444-PA 894 GJ14444-PA 17..892 1..878 4408 92.8 Plus
Dvir\GJ18201-PA 1039 GJ18201-PA 224..645 198..632 165 23 Plus
Dvir\GJ18629-PA 544 GJ18629-PA 39..532 33..547 155 20.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12773-PA 876 GK12773-PA 1..876 1..879 4432 93.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25005-PA 879 GE25005-PA 1..879 1..879 4666 99 Plus

LP19442.hyp Sequence

Translation from 284 to 2923

> LP19442.hyp
MGSLPQLSIVKGLQQDFVPRALHRIFEEQQLRHADKVALIYQPSTTGQGM
APSQSSYRQMNERANRAARLLVAETHGRFLQPNSDGDFIVAVCMQPSEGL
VTTLLAIWKAGGAYLPIDPSFPANRIHHILLEAKPTLVIRDDDIDAGRFQ
GTPTLSTTELYAKSLQLAGSNLLSEEMLRGGNDHIAIVLYTSGSTGVPKG
VRLPHESILNRLQWQWATFPYTANEAVSVFKTALTFVDSIAELWGPLMCG
LAILVVPKAVTKDPQRLVALLERYKIRRLVLVPTLLRSLLMYLKMEGGGA
AQKLLYNLQIWVCSGEPLSVSLASSFFDYFDEGVHRLYNFYGSTEVLGDV
TYFACESKKQLSLYDNVPIGIPLSNTVVYLLDADYRPVKNGEIGEIFASG
LNLAAGYVNGRDPERFLENPLAVEKKYARLYRTGDYGSLKNGSIMYEGRT
DSQVKIRGHRVDLSEVEKNVAELPLVDKAIVLCYHAGQVDQAILAFVKLR
DDAPMVTEMQMEARLKDKLADYMTPQVVILEHVPLLVNGKVDRQALLKTY
ETANNNEGDSSIVLDFDYSQVPEDLKLTARDLFETVGGVIGRSTRATLAP
HSNFYELGGNSLNSIFTVTLLREKGYNIGISEFIAAKNLGEIIEKMAANH
DAVQLEEESLNACPHLKMEAVPLRLEHRQEVIDIIVASFYNKADLEQWLK
PGVLRTDYSDILNDIWNVLVERDLSFVVYDTNTDRIIGTALNFDARNEPE
VDIKSKLLIVFEFLEFCEGPIRDNYLPKGLNQILHSFMMGTAEKLNPREN
IACMHFMEHEVLRVAREKQFAGIFTTNTSPLTQQLADVYHYKTLLNFQVN
EYVHSDGSRPFGDAPDEQRAIVHWKEVGK*

LP19442.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
e-PA 879 CG3331-PA 1..879 1..879 4529 100 Plus