Clone LP19665 Report

Search the DGRC for LP19665

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:196
Well:65
Vector:pOT2
Associated Gene/TranscriptPeritrophin-15b-RA
Protein status:LP19665.pep: gold
Sequenced Size:339

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31893 2003-01-01 Sim4 clustering to Release 3
CG31893 2004-02-06 Blastp of sequenced clone
Peritrophin-15b 2008-04-29 Release 5.5 accounting
Peritrophin-15b 2008-08-15 Release 5.9 accounting
Peritrophin-15b 2008-12-18 5.12 accounting

Clone Sequence Records

LP19665.complete Sequence

339 bp (339 high quality bases) assembled on 2004-02-06

GenBank Submission: BT012312

> LP19665.complete
ACTCGAACAAACCACAATGAAAGCAGCTTTAGTCCTTCTCTTCCTGACCC
TCTGCGTTGCCATCTACGCCGACCTTGACTGCAATCCCGATGGCAATGGT
GAGCCCGATTGCGTGGGACGCTCCGGAGAGATTTCCCGTGACTTCTGGGA
TCCAACCCACTACTGGCAGTGCTCTAGCACCGGACAGGCCGAGCTAGTTG
CCTGCGAGCAGAACACTGGATTCGATCCGAAAACTGGAAGCTGCGTCGAT
TGGAGCGTTTGGCAGTGGTATCCTCCATGTTCCGAAGCATCCACTTAAGC
AATAAACTTCTCTTGCAGTTTAAAAAAAAAAAAAAAAAA

LP19665.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Peritrophin-15b-RA 650 Peritrophin-15b-RA 226..547 1..322 1610 100 Plus
Peritrophin-15b.a 372 Peritrophin-15b.a 68..359 31..322 1460 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8393409..8393706 321..24 1490 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:58:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8394509..8394807 322..24 1495 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8394509..8394807 322..24 1495 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:44:12 has no hits.

LP19665.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:44:55 Download gff for LP19665.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8393409..8393703 27..321 100 <- Minus
chr2L 8393771..8393796 1..26 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:43:44 Download gff for LP19665.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-15b-RA 1..282 17..298 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:39:18 Download gff for LP19665.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-15b-RA 1..282 17..298 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:16:36 Download gff for LP19665.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-15b-RA 1..282 17..298 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:31:04 Download gff for LP19665.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-15b-RA 1..282 17..298 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:51 Download gff for LP19665.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-15b-RA 1..282 17..298 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:12:29 Download gff for LP19665.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-15b-RA 1..282 17..298 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:39:17 Download gff for LP19665.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-15b-RA 1..321 1..321 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:16:36 Download gff for LP19665.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-15b-RA 12..332 1..321 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:31:04 Download gff for LP19665.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-15b-RA 1..282 17..298 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:51 Download gff for LP19665.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-15b-RA 17..337 1..321 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:44:55 Download gff for LP19665.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8394510..8394804 27..321 100 <- Minus
2L 8394872..8394897 1..26 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:44:55 Download gff for LP19665.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8394510..8394804 27..321 100 <- Minus
2L 8394872..8394897 1..26 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:44:55 Download gff for LP19665.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8394510..8394804 27..321 100 <- Minus
2L 8394872..8394897 1..26 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:16:36 Download gff for LP19665.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8394510..8394804 27..321 100 <- Minus
arm_2L 8394872..8394897 1..26 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:03:38 Download gff for LP19665.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8394510..8394804 27..321 100 <- Minus
2L 8394872..8394897 1..26 100   Minus

LP19665.hyp Sequence

Translation from 0 to 297

> LP19665.hyp
LEQTTMKAALVLLFLTLCVAIYADLDCNPDGNGEPDCVGRSGEISRDFWD
PTHYWQCSSTGQAELVACEQNTGFDPKTGSCVDWSVWQWYPPCSEAST*

LP19665.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
Peritrophin-15b-PC 93 CG31893-PC 1..93 6..98 535 100 Plus
Peritrophin-15b-PA 93 CG31893-PA 1..93 6..98 535 100 Plus
Peritrophin-15b-PB 91 CG31893-PB 1..91 6..98 514 97.8 Plus
Peritrophin-15a-PA 92 CG17814-PA 1..92 6..93 201 44.6 Plus
CG14244-PB 106 CG14244-PB 50..95 50..95 137 51.1 Plus

LP19665.pep Sequence

Translation from 16 to 297

> LP19665.pep
MKAALVLLFLTLCVAIYADLDCNPDGNGEPDCVGRSGEISRDFWDPTHYW
QCSSTGQAELVACEQNTGFDPKTGSCVDWSVWQWYPPCSEAST*

LP19665.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14680-PA 91 GF14680-PA 1..88 1..88 192 48.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23443-PA 98 GG23443-PA 1..97 1..88 172 41.2 Plus
Dere\GG12307-PA 99 GG12307-PA 3..93 6..92 135 38.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11353-PA 116 GH11353-PA 28..113 1..88 220 51.7 Plus
Dgri\GH23637-PA 173 GH23637-PA 82..170 2..88 217 48.9 Plus
Dgri\GH23637-PA 173 GH23637-PA 28..87 1..62 145 54 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
Peritrophin-15b-PC 93 CG31893-PC 1..93 1..93 535 100 Plus
Peritrophin-15b-PA 93 CG31893-PA 1..93 1..93 535 100 Plus
Peritrophin-15b-PB 91 CG31893-PB 1..91 1..93 514 97.8 Plus
Peritrophin-15a-PA 92 CG17814-PA 1..92 1..88 201 44.6 Plus
CG14244-PB 106 CG14244-PB 50..95 45..90 137 51.1 Plus
CG14645-PA 97 CG14645-PA 3..93 6..92 134 30.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12955-PA 90 GI12955-PA 13..90 12..92 194 48.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25805-PA 89 GL25805-PA 1..88 1..88 297 65.2 Plus
Dper\GL18453-PA 89 GL18453-PA 1..88 1..88 297 65.2 Plus
Dper\GL25804-PA 90 GL25804-PA 1..89 1..88 255 57.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16549-PA 89 GA16549-PA 1..88 1..88 297 65.2 Plus
Dpse\GA25453-PA 90 GA25453-PA 1..89 1..88 253 56.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12961-PA 93 GM12961-PA 1..93 1..93 448 90.3 Plus
Dsec\GM12960-PA 92 GM12960-PA 1..92 1..88 190 45.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22406-PA 93 GD22406-PA 1..93 1..93 469 94.6 Plus
Dsim\GD22405-PA 92 GD22405-PA 1..92 1..88 195 46.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18192-PA 90 GJ18192-PA 1..87 1..88 264 59.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18386-PA 620 GK18386-PA 1..69 1..72 151 46.7 Plus
Dwil\GK18688-PA 720 GK18688-PA 1..69 1..72 150 46.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11009-PA 93 GE11009-PA 1..93 1..93 415 81.7 Plus
Dyak\GE11001-PA 97 GE11001-PA 1..96 1..88 180 41.7 Plus