Clone LP19670 Report

Search the DGRC for LP19670

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:196
Well:70
Vector:pOT2
Associated Gene/Transcriptblow-RB
Protein status:LP19670.pep: gold
Sequenced Size:2145

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
blow-RB 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

LP19670.complete Sequence

2145 bp assembled on 2011-04-20

GenBank Submission: BT126355.1

> LP19670.complete
ACCTTCCCTAGTCGGTTCCACTTTCTCGGGTCTCGGTTCAGTGGCTCTCA
GGGCATGATCAGGGGAATAGAGGAGCACGTACATATATATGTCCGCGCCC
ACTTCCGAGCCTCGCTGGAGACCTCGGAGTACGAGAACACCTCGAACCTA
TTCCATGTGACGGCCGCCGAGCAGACCGCCGCTCTTCTGGCCCGCTGCGA
AATCCTGCTGGCTGCAGCCAGTTCTGCATCGGGATCGGGATCGGGACTGG
AACTGGGATCAGGGCTGGGATGCGCAGACGAGCAGGCGGCAGCTAACCAT
CGTTCCAGCCTGGTCGACTGTGTCGATAGCAAGGTGGGCGCGGAGACCGG
TCCCAGCGGTTATCTGGAGATGCTTGCCTCCCCGTCACCCTCGAAAAGCT
CACTGTCCGCCTCGCGGGAGTACATTGATTTGGGCAGCAGCGGATCCCTG
GATCGTTGCTCCGTCAATCAACCGGTTCCGGCAGCGAAGGACAAGGAGCC
ACATCAGCAGCTCTACGAGATTTGCCAGGGCCAGGGAGCGGGCCAGGACG
AGGATGAGGCGCAACAGGCGATCACCTTTACCCACGAGGTGTTCATTGAC
TGCCCGTATGCAGATCTGCCCGCTGGCCACTTGTCCCTGCAGAGGTCAAC
AAAGTACGGACAGCTGCAGAGGATTGTGCCCAAGCGGCTGTTCTTCGACC
AGACCCGCAAGTGCTACTGTGGCATCCTCAACGATTGGATGCTGTGCTAT
GCCGACGGCCCGACCGCCTGTCGACCCAGCAGCACGCTCTACTTGAAGAG
CTCCTCCATCGAGATTGAACACTTCGGAGAGGGGAAGCGGCGCGACATCT
GCTTCCAGATCACAACAGACGACCCCAACAAGAAGTTCGTGTACCAGGCC
AACAACGAAGTCGATGCCAAAGAGTGGATACACGCCATTGAGGCGGCCAT
CCGCGGAGATGCTGGTGCTCATTCAGCGTTAAAGACTCCACCGCCCCGGA
AACTGCCCACGCCGCCGGTCCAAAAGAAATCCACCTACACAGCAGCGGAT
ATCATCTACGAGGAGCCCTCGCCCGTGTATGGTCTCATAGACTCCTCCTC
CATGGTGCTCCCTAAGCTGCCGGAGAAAAGCAACAGCCCAAGCGCCCTCG
CCCGACGTTTCGAGTACGATGTGCCCAAATGCCCGGCACAGCCGCTGCAG
GACACCTCCTCCAGGGTGGCATCTGTAAGTGGGGAGCTGGAATCCCTGGG
ACTACTCAACGAGGGAGATATTAAGGTGCAACCGCAGCCTTCCAGTTTGC
ACGGAAGCATATCGCTGGACTTCCAGGCCAGGGTGAAAACAGTGCACAGT
GAGCTCTCCACCCAGTTATCAGCGGCCGGTCCCAGTCCGGATCGTCTGAA
AAAGGCAGCGAAAAAGAGCTATTCGAATGGTAGTGAACCGGAGATGCTCT
CTCCCCTGACCAGCCCCGTCCAAACGCCCACCAAGGATCAGAAGAAGCAG
CGCAAGTCAACCACCTCACCGCAATCCAGTCCGGTCAGCAAGGACTGCGA
CAAGCTGGCACGAAACTGGTTCCTCAGTCGCCTTAACAAGAGCACCGGAT
TGAAGGCGACCAACACGGGCAGTGCATCACCAACCAACGCCAAGTGCAAG
CAGAGCGAGAAGGAGAACCTGCTGACGGAAGCGGAGCTGGGCGAGGGCTA
TGATGCAAGTCCTGGTGATCGGTATCACGGCCTGCCGGGCAGCCCGCCCA
CGTCGCCGTGTCTGAAGGCGGAGGCCAAGAGCAAGGTGAACATGATTATC
AACCAGTTTGAGAGTAGCGGTCACCTGTCCACCATGTTCAGCGTGGAAGC
TTTGGCCGCCAATGCACTCGCCTCGCTGACATCCTTCTGCGAAAGTGATG
GTTGCAACAACTACGAGCCAATCATGCCCCTGGCCACGACTCCCAGCAGC
TTTCTCAAGAAGGTGTAGACTGCCGCACATCCGTCATCTGCTATTCACAT
CCGACGTCCTGGAGAGCTCGTTCGTCTCTGTATTGTAGATTTAATCCTTA
GGCTAGTGAAAACCACTCTCCGGATGTCACATAACTTTGACATAAAATTT
TAATATCAAAACCATGGTTGTTAACATAAAAAAAAAAAAAAAAAA

LP19670.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3467988..3469711 2127..404 8545 99.7 Minus
chr2R 21145070 chr2R 3469970..3470284 403..89 1545 99.4 Minus
chr2R 21145070 chr2R 3471491..3471578 88..1 440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7580630..7582354 2128..404 8625 100 Minus
2R 25286936 2R 7582614..7582928 403..89 1575 100 Minus
2R 25286936 2R 7584135..7584222 88..1 440 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7581829..7583553 2128..404 8625 100 Minus
2R 25260384 2R 7583813..7584127 403..89 1575 100 Minus
2R 25260384 2R 7585334..7585421 88..1 440 100 Minus
Blast to na_te.dros performed 2019-03-15 10:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 1577..1621 1212..1166 122 76.6 Minus

LP19670.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:35:18 Download gff for LP19670.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3467988..3469711 404..2127 99 <- Minus
chr2R 3469970..3470284 89..403 99 <- Minus
chr2R 3471491..3471578 1..88 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-27 15:22:33 Download gff for LP19670.complete
Subject Subject Range Query Range Percent Splice Strand
blow-RB 1..1914 55..1968 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:19:36 Download gff for LP19670.complete
Subject Subject Range Query Range Percent Splice Strand
blow-RB 1..1914 55..1968 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:06:10 Download gff for LP19670.complete
Subject Subject Range Query Range Percent Splice Strand
blow-RB 1..1914 55..1968 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-27 15:22:33 Download gff for LP19670.complete
Subject Subject Range Query Range Percent Splice Strand
blow-RB 1..2127 1..2127 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:19:36 Download gff for LP19670.complete
Subject Subject Range Query Range Percent Splice Strand
blow-RB 1..2127 1..2127 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:10 Download gff for LP19670.complete
Subject Subject Range Query Range Percent Splice Strand
blow-RB 1..2127 1..2127 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:35:18 Download gff for LP19670.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7584135..7584222 1..88 100   Minus
2R 7580631..7582354 404..2127 100 <- Minus
2R 7582614..7582928 89..403 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:35:18 Download gff for LP19670.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7584135..7584222 1..88 100   Minus
2R 7580631..7582354 404..2127 100 <- Minus
2R 7582614..7582928 89..403 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:35:18 Download gff for LP19670.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7584135..7584222 1..88 100   Minus
2R 7580631..7582354 404..2127 100 <- Minus
2R 7582614..7582928 89..403 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:19:36 Download gff for LP19670.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3468136..3469859 404..2127 100 <- Minus
arm_2R 3470119..3470433 89..403 100 <- Minus
arm_2R 3471640..3471727 1..88 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:06:04 Download gff for LP19670.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7581830..7583553 404..2127 100 <- Minus
2R 7583813..7584127 89..403 100 <- Minus
2R 7585334..7585421 1..88 100   Minus

LP19670.pep Sequence

Translation from 0 to 1967

> LP19670.pep
TFPSRFHFLGSRFSGSQGMIRGIEEHVHIYVRAHFRASLETSEYENTSNL
FHVTAAEQTAALLARCEILLAAASSASGSGSGLELGSGLGCADEQAAANH
RSSLVDCVDSKVGAETGPSGYLEMLASPSPSKSSLSASREYIDLGSSGSL
DRCSVNQPVPAAKDKEPHQQLYEICQGQGAGQDEDEAQQAITFTHEVFID
CPYADLPAGHLSLQRSTKYGQLQRIVPKRLFFDQTRKCYCGILNDWMLCY
ADGPTACRPSSTLYLKSSSIEIEHFGEGKRRDICFQITTDDPNKKFVYQA
NNEVDAKEWIHAIEAAIRGDAGAHSALKTPPPRKLPTPPVQKKSTYTAAD
IIYEEPSPVYGLIDSSSMVLPKLPEKSNSPSALARRFEYDVPKCPAQPLQ
DTSSRVASVSGELESLGLLNEGDIKVQPQPSSLHGSISLDFQARVKTVHS
ELSTQLSAAGPSPDRLKKAAKKSYSNGSEPEMLSPLTSPVQTPTKDQKKQ
RKSTTSPQSSPVSKDCDKLARNWFLSRLNKSTGLKATNTGSASPTNAKCK
QSEKENLLTEAELGEGYDASPGDRYHGLPGSPPTSPCLKAEAKSKVNMII
NQFESSGHLSTMFSVEALAANALASLTSFCESDGCNNYEPIMPLATTPSS
FLKKV*

LP19670.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11709-PA 630 GF11709-PA 13..630 25..655 2430 80.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10729-PA 641 GG10729-PA 13..641 25..655 2920 93 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20021-PA 672 GH20021-PA 14..672 25..655 1828 61.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
blow-PB 637 CG1363-PB 1..637 19..655 3301 100 Plus
blow-PD 644 CG1363-PD 20..644 31..655 3236 100 Plus
blow-PA 644 CG1363-PA 20..644 31..655 3236 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19201-PA 718 GI19201-PA 20..718 31..655 1758 58 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20103-PA 659 GL20103-PA 13..659 25..655 1986 70.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12421-PB 659 GA12421-PB 13..659 25..655 1996 70.6 Plus
Dpse\GA12421-PC 652 GA12421-PC 12..652 31..655 1990 71.1 Plus
Dpse\GA12421-PD 619 GA12421-PD 1..619 69..655 1875 70.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20776-PA 631 GM20776-PA 13..631 25..655 3142 94.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10237-PA 620 GD10237-PA 13..620 25..655 3108 93.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20268-PA 677 GJ20268-PA 10..677 21..655 1801 59.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10711-PA 616 GK10711-PA 18..616 25..655 1582 59.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23805-PA 641 GE23805-PA 13..641 25..655 2887 91.5 Plus

LP19670.hyp Sequence

Translation from 0 to 1967

> LP19670.hyp
TFPSRFHFLGSRFSGSQGMIRGIEEHVHIYVRAHFRASLETSEYENTSNL
FHVTAAEQTAALLARCEILLAAASSASGSGSGLELGSGLGCADEQAAANH
RSSLVDCVDSKVGAETGPSGYLEMLASPSPSKSSLSASREYIDLGSSGSL
DRCSVNQPVPAAKDKEPHQQLYEICQGQGAGQDEDEAQQAITFTHEVFID
CPYADLPAGHLSLQRSTKYGQLQRIVPKRLFFDQTRKCYCGILNDWMLCY
ADGPTACRPSSTLYLKSSSIEIEHFGEGKRRDICFQITTDDPNKKFVYQA
NNEVDAKEWIHAIEAAIRGDAGAHSALKTPPPRKLPTPPVQKKSTYTAAD
IIYEEPSPVYGLIDSSSMVLPKLPEKSNSPSALARRFEYDVPKCPAQPLQ
DTSSRVASVSGELESLGLLNEGDIKVQPQPSSLHGSISLDFQARVKTVHS
ELSTQLSAAGPSPDRLKKAAKKSYSNGSEPEMLSPLTSPVQTPTKDQKKQ
RKSTTSPQSSPVSKDCDKLARNWFLSRLNKSTGLKATNTGSASPTNAKCK
QSEKENLLTEAELGEGYDASPGDRYHGLPGSPPTSPCLKAEAKSKVNMII
NQFESSGHLSTMFSVEALAANALASLTSFCESDGCNNYEPIMPLATTPSS
FLKKV*

LP19670.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
blow-PB 637 CG1363-PB 1..637 19..655 3301 100 Plus
blow-PD 644 CG1363-PD 20..644 31..655 3236 100 Plus
blow-PA 644 CG1363-PA 20..644 31..655 3236 100 Plus