Clone LP20373 Report

Search the DGRC for LP20373

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:203
Well:73
Vector:pOT2
Associated Gene/TranscriptCG13605-RB
Protein status:LP20373.pep: gold
Sequenced Size:2138

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13605 2003-01-01 Sim4 clustering to Release 3
CG13605 2004-10-02 Blastp of sequenced clone
CG13605 2008-04-29 Release 5.5 accounting
CG13605 2008-08-15 Release 5.9 accounting
CG13605 2008-12-18 5.12 accounting

Clone Sequence Records

LP20373.complete Sequence

2138 bp (2138 high quality bases) assembled on 2004-10-02

GenBank Submission: BT016044

> LP20373.complete
TGGATGTGGAACAATGAACAACAGCCCCAAGGATCCCTATCGTGGAGGAG
GAGGAGGTTCTGGACCCCAGGATGGCGCTGGATCGACCGGTGTGTCTATC
AACATCGAGAGCGACGACAATGACTCGACGACGGCGGAACACGACTACCT
GCTGCCTGCCTCCTCATCTTCGGTGACCTCTGGTGGTGGCGTCGGAGGTG
GAGGCGTCGTCTCTGGAGGATCGACCAGCACCAGCGTAAACCTGGACCAC
CAACACGTTCCCACGGCGCGGAGCAGCAGCCTTAGTGGTGGTAATGTCCG
TCATGGTAACATTCTATCCACATTTTTGGCCCGTCAGCGCTCGTACACGC
CAGCCAGCAACAGCAGTTCCCCGGTGCGGGTGACCACACAGATGAACCGT
CGTCTTCAGCAGTCCCGTAGTATGGGCGCCAACACCGGTGGCAGTCTCGA
GGAGCCGTCCAGCGCCGGAGCAGCAGGTGGACCAGGAGCATCGCCAGGAA
CTGCGGCAGGTGTTCGACAAATGGGCTTTTGGCGTGTCAACCTCAACGAT
GTCTTTTCGCTTTCAACTGCCTCGTCGACAGAGGCGCTCCGATCCTTCAT
CTCACATTCCAATTTTAGATATCCACCTGCAACCACTGCAGCCCCCGCGG
CACCAGGACCTCAGCCAGCCGCCAATCCCGTAGACAACTCGCACATACTG
CTCGGCCAGCAGCAACCATCAATGCCTGAGCCAGTCAGCCCTCTGCGATA
CGGGCGCGTTTCGGCCGTATCTGGAGCCAGTTCAGCTGGAGCTATGGGTA
GAAGTATCTCGCTGCGTGAGGGTGAGATGCGACACAATCACAGCCTTAAC
GGAGGACGGCACAATGCCAGTGCCATAGGACTAAACAGCAATCCGGCGGC
CTTCGACGAACGCGAAGCAAATGAGAGCCAAGACCTTGACGAAAGCGATG
GCAACGTGGAGAACGGAGGTGGAGGTGGCAATCCACCAGAGCCAGCAGAG
AATAATCCAGAGGATGAACATCTCATCTCGGATGACATGGTGGTCCAGAT
TCTCAGCCATTTTGTGCGATATCTGCCGCTTATCTTTATACTGTTTTTCA
AGTTTTTACACGACCACCTGCTGGGCATTGTGGATCTTCTGGTGCTGCAG
ACTGTGATGTATAATGTTAACCGATCAGTACGCAATCAGGTAGCCCGTCT
AGCTCAGAAGAACTACGCCGTGATGGTGCGGGATACTTTCCTCGTTGCCG
TGGTGGTTACAGTGCGTCTATTTTTGGCCACTTCGCCGCCAGATCCGTTT
GGACTGATTGTGCCGCCTTCCAGAAAATCCGTTTTCATAGAGGTCACAGC
GCTGCCTTTTCACACTAGCTCGGAAGGCGACAGCCCCACAACATCGTCCG
AACCCATCAAGACCAACATGTACAAAGATACGTACAAATCTCTAAATGTG
ATCCCACTGGGCATGTTGCTGTACTACATTGCTGTGAGCGATCTCATTAT
CAAACTGCTGACAATGCTGGTCAAACTTATTATTACCATGCTGCCGCACC
ACTTGATGAGACTTAAAGTGCGGGCTAGGCTTTATGTGTTGGTGGAGTAC
ATTTCGCAGTTCTACCGGGCAATGACACCCATTACCCAGTGGCTCCTATT
TCTATACGAGTCCTACTCCGGCCTGGAGGTGGTTTCCGGAGGACTCTTTT
CCGCAATGTACCTGGGTGCCAAGATATTTGAGCTGGTGGAGCGCGGCAAG
TCGCTAAAGAAAGCCATTGTGACCTTCAGAAAAAATATTGACTCTGAGCG
GCCGCCGACCAAAGACGAGCTGGATGCTGCGGGTGCCCTGTGTCCAATCT
GCCATGACGCCTTCAACACACCCACTGTGTTGGAGTGCGGCCACATTTTC
TGTGATGAGTGCGTCCAGACCTGGTTCAAGCGCGAACAGACCTGTCCGAT
GTGCAGGGCGAAGGTTAGCGATGATCCCGCCTGGCAGGACGGCAGCACTA
CCTTCTTCCATCAGTTGTACTAGCTGCGCCACCAAAGAAATTTCCACGGA
TTTCGCGTGTACATATAGTCGCTAGCTAGCCCTTTGTTTAATTAAACTGA
CAGTTATTAATTATTACTACAAAAAAAAAAAAAAAAAA

LP20373.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13605-RB 2280 CG13605-RB 161..2280 1..2120 10600 100 Plus
CG18428-RA 677 CG18428-RA 609..677 2122..2054 345 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19934080..19935653 1574..1 7720 99.4 Minus
chr3R 27901430 chr3R 19933262..19933592 2120..1790 1640 99.7 Minus
chr3R 27901430 chr3R 19933650..19933867 1790..1573 1090 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:58:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24110762..24112335 1574..1 7870 100 Minus
3R 32079331 3R 24109942..24110274 2122..1790 1665 100 Minus
3R 32079331 3R 24110332..24110549 1790..1573 1090 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23851593..23853166 1574..1 7870 100 Minus
3R 31820162 3R 23850773..23851105 2122..1790 1665 100 Minus
3R 31820162 3R 23851163..23851380 1790..1573 1090 100 Minus
Blast to na_te.dros performed on 2019-03-16 06:45:15 has no hits.

LP20373.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:46:09 Download gff for LP20373.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19933262..19933592 1790..2120 99 <- Minus
chr3R 19933651..19933866 1574..1789 100 <- Minus
chr3R 19934081..19935653 1..1573 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:43:56 Download gff for LP20373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13605-RA 1..1756 14..1769 100 == Plus
CG13605-RA 1757..1989 1791..2023 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:38:18 Download gff for LP20373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13605-RB 1..2010 14..2023 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:19:55 Download gff for LP20373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13605-RB 1..2010 14..2023 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:14:50 Download gff for LP20373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13605-RA 1..1756 14..1769 100 == Plus
CG13605-RA 1757..1989 1791..2023 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:23:30 Download gff for LP20373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13605-RB 1..2010 14..2023 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:42:41 Download gff for LP20373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13605-RA 68..1836 1..1769 100 == Plus
CG13605-RA 1837..2166 1791..2120 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:38:18 Download gff for LP20373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13605-RB 68..2187 1..2120 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:55 Download gff for LP20373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13605-RB 55..2174 1..2120 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:14:50 Download gff for LP20373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13605-RA 1837..2166 1791..2120 100   Plus
CG13605-RA 68..1836 1..1769 100 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:23:30 Download gff for LP20373.complete
Subject Subject Range Query Range Percent Splice Strand
CG13605-RB 55..2174 1..2120 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:46:09 Download gff for LP20373.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24109944..24110274 1790..2120 100 <- Minus
3R 24110333..24110548 1574..1789 100 <- Minus
3R 24110763..24112335 1..1573 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:46:09 Download gff for LP20373.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24109944..24110274 1790..2120 100 <- Minus
3R 24110333..24110548 1574..1789 100 <- Minus
3R 24110763..24112335 1..1573 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:46:09 Download gff for LP20373.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24109944..24110274 1790..2120 100 <- Minus
3R 24110333..24110548 1574..1789 100 <- Minus
3R 24110763..24112335 1..1573 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:55 Download gff for LP20373.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19935666..19935996 1790..2120 100 <- Minus
arm_3R 19936055..19936270 1574..1789 100 <- Minus
arm_3R 19936485..19938057 1..1573 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:51:01 Download gff for LP20373.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23851164..23851379 1574..1789 100 <- Minus
3R 23850775..23851105 1790..2120 100 <- Minus
3R 23851594..23853166 1..1573 100   Minus

LP20373.hyp Sequence

Translation from 0 to 2022

> LP20373.hyp
GCGTMNNSPKDPYRGGGGGSGPQDGAGSTGVSINIESDDNDSTTAEHDYL
LPASSSSVTSGGGVGGGGVVSGGSTSTSVNLDHQHVPTARSSSLSGGNVR
HGNILSTFLARQRSYTPASNSSSPVRVTTQMNRRLQQSRSMGANTGGSLE
EPSSAGAAGGPGASPGTAAGVRQMGFWRVNLNDVFSLSTASSTEALRSFI
SHSNFRYPPATTAAPAAPGPQPAANPVDNSHILLGQQQPSMPEPVSPLRY
GRVSAVSGASSAGAMGRSISLREGEMRHNHSLNGGRHNASAIGLNSNPAA
FDEREANESQDLDESDGNVENGGGGGNPPEPAENNPEDEHLISDDMVVQI
LSHFVRYLPLIFILFFKFLHDHLLGIVDLLVLQTVMYNVNRSVRNQVARL
AQKNYAVMVRDTFLVAVVVTVRLFLATSPPDPFGLIVPPSRKSVFIEVTA
LPFHTSSEGDSPTTSSEPIKTNMYKDTYKSLNVIPLGMLLYYIAVSDLII
KLLTMLVKLIITMLPHHLMRLKVRARLYVLVEYISQFYRAMTPITQWLLF
LYESYSGLEVVSGGLFSAMYLGAKIFELVERGKSLKKAIVTFRKNIDSER
PPTKDELDAAGALCPICHDAFNTPTVLECGHIFCDECVQTWFKREQTCPM
CRAKVSDDPAWQDGSTTFFHQLY*

LP20373.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13605-PB 669 CG13605-PB 1..669 5..673 3467 100 Plus

LP20373.pep Sequence

Translation from 13 to 2022

> LP20373.pep
MNNSPKDPYRGGGGGSGPQDGAGSTGVSINIESDDNDSTTAEHDYLLPAS
SSSVTSGGGVGGGGVVSGGSTSTSVNLDHQHVPTARSSSLSGGNVRHGNI
LSTFLARQRSYTPASNSSSPVRVTTQMNRRLQQSRSMGANTGGSLEEPSS
AGAAGGPGASPGTAAGVRQMGFWRVNLNDVFSLSTASSTEALRSFISHSN
FRYPPATTAAPAAPGPQPAANPVDNSHILLGQQQPSMPEPVSPLRYGRVS
AVSGASSAGAMGRSISLREGEMRHNHSLNGGRHNASAIGLNSNPAAFDER
EANESQDLDESDGNVENGGGGGNPPEPAENNPEDEHLISDDMVVQILSHF
VRYLPLIFILFFKFLHDHLLGIVDLLVLQTVMYNVNRSVRNQVARLAQKN
YAVMVRDTFLVAVVVTVRLFLATSPPDPFGLIVPPSRKSVFIEVTALPFH
TSSEGDSPTTSSEPIKTNMYKDTYKSLNVIPLGMLLYYIAVSDLIIKLLT
MLVKLIITMLPHHLMRLKVRARLYVLVEYISQFYRAMTPITQWLLFLYES
YSGLEVVSGGLFSAMYLGAKIFELVERGKSLKKAIVTFRKNIDSERPPTK
DELDAAGALCPICHDAFNTPTVLECGHIFCDECVQTWFKREQTCPMCRAK
VSDDPAWQDGSTTFFHQLY*

LP20373.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18672-PA 678 GF18672-PA 1..678 1..669 2516 76.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12376-PA 680 GG12376-PA 8..680 1..669 2812 89.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19096-PA 690 GH19096-PA 1..690 1..669 1773 56.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13605-PB 669 CG13605-PB 1..669 1..669 3467 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23432-PA 675 GI23432-PA 1..675 1..669 1877 59.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24146-PA 667 GL24146-PA 1..667 1..669 2221 69.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12398-PA 674 GA12398-PA 1..674 1..669 2220 69.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23514-PA 669 GM23514-PA 1..669 1..669 2905 95.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18324-PA 651 GD18324-PA 1..651 1..669 2807 92.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14535-PA 679 GJ14535-PA 1..679 1..669 1905 59.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11936-PA 685 GK11936-PA 1..685 1..669 2028 61.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10830-PA 678 GE10830-PA 1..678 1..669 2903 90.7 Plus