Clone LP20412 Report

Search the DGRC for LP20412

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:204
Well:12
Vector:pOT2
Associated Gene/TranscriptCG34193-RA
Protein status:LP20412.pep: gold
Sequenced Size:806

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG34193 2008-04-29 Release 5.5 accounting
CG34193 2008-08-15 Release 5.9 accounting
CG34193 2008-12-18 5.12 accounting

Clone Sequence Records

LP20412.complete Sequence

806 bp (806 high quality bases) assembled on 2006-08-24

GenBank Submission: BT028800

> LP20412.complete
CTTGCCTTGAAAACCATATCCTTTGCAACTAACCACACAATGAAAGTACT
CCTGGCTTTAACTTTCCTGGCCACTTTGGCTCTTTCAGTGGCCCTTCCCC
AGGTGGGACATGGATCTGTAAATGGACCCAGTGGGCGCTTCCCTATGACG
AAGAATTGGGCGCAACCTCCGGTTGATTTGCGAAAACCCATTATCTTTCT
GCCAGAGGCCACGCCCATTCACGAAGCCCAGGAGTCGCGCCCCCGACTAG
CCAAACATCGCAAGAGTGGATAGATGCCAAGGAATACCTATTTATTATTT
AAATTTAATAAGTATATGTTCGTAAGACAATCTGTTTCGTTGACATCTTA
TAGATGCGAATTATATTTAGCAAAACATTAGAAAAGTCAAGGAATTTCTG
AAATATAAGTTAAGAAACATAGCACTAACTCGCTATAAAATAGCTTACAT
TCTAATAACTAAATTTGGCCTTCATTCGAATTAATTGAACATGAAGTTCA
CAAAAATTAGGTACAAAAACATTAATTTACTTTGGAGAAGGACGAAACAT
AATTTAATCTTGCTTACAAATTTACAAAATGCAACCAGTTTTTTTCGCGT
GCTATATTTTATTGAGTTTTTGATAAATTTCGCTAATCAAACATTACAAC
ATATATATATGGCGTGCTTAATGGCACTAACTAATGCTTAACTAATAACT
TATTTAATTTAAAACATTAATTTCTGTGCCAGATATAAAACAAGTAAGGC
AATGCAAATAAATTGTTTGATTGTAGCTGAAGAACTTTAAAAAAAAAAAA
AAAAAA

LP20412.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG34193.a 1340 CG34193.a 318..1108 1..791 3955 100 Plus
CG34193-RA 1067 CG34193-RA 318..1067 1..750 3750 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13397215..13397868 135..788 3255 99.8 Plus
chr2R 21145070 chr2R 13397014..13397148 1..135 645 98.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:58:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17510145..17510801 135..791 3285 100 Plus
2R 25286936 2R 17509944..17510078 1..135 675 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17511344..17512000 135..791 3285 100 Plus
2R 25260384 2R 17511143..17511277 1..135 675 100 Plus
Blast to na_te.dros performed 2019-03-16 15:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 326..489 372..535 117 54.8 Plus

LP20412.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:18:10 Download gff for LP20412.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13397014..13397148 1..135 98 -> Plus
chr2R 13397216..13397868 136..788 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:44:00 Download gff for LP20412.complete
Subject Subject Range Query Range Percent Splice Strand
CG34193-RA 1..234 40..273 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:28:20 Download gff for LP20412.complete
Subject Subject Range Query Range Percent Splice Strand
CG34193-RA 1..234 40..273 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:08:07 Download gff for LP20412.complete
Subject Subject Range Query Range Percent Splice Strand
CG34193-RA 1..234 40..273 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:52:09 Download gff for LP20412.complete
Subject Subject Range Query Range Percent Splice Strand
CG34193-RA 1..234 40..273 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:39:41 Download gff for LP20412.complete
Subject Subject Range Query Range Percent Splice Strand
CG34193-RA 1..234 40..273 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:59:28 Download gff for LP20412.complete
Subject Subject Range Query Range Percent Splice Strand
CG34193-RA 1..725 7..731 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:28:20 Download gff for LP20412.complete
Subject Subject Range Query Range Percent Splice Strand
CG34193-RA 1..725 7..731 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:07 Download gff for LP20412.complete
Subject Subject Range Query Range Percent Splice Strand
CG34193-RA 1..788 1..788 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:52:10 Download gff for LP20412.complete
Subject Subject Range Query Range Percent Splice Strand
CG34193-RA 1..725 7..731 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:41 Download gff for LP20412.complete
Subject Subject Range Query Range Percent Splice Strand
CG34193-RA 19..806 1..788 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:18:10 Download gff for LP20412.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17509944..17510078 1..135 100 -> Plus
2R 17510146..17510798 136..788 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:18:10 Download gff for LP20412.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17509944..17510078 1..135 100 -> Plus
2R 17510146..17510798 136..788 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:18:10 Download gff for LP20412.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17509944..17510078 1..135 100 -> Plus
2R 17510146..17510798 136..788 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:07 Download gff for LP20412.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13397449..13397583 1..135 100 -> Plus
arm_2R 13397651..13398303 136..788 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:54:38 Download gff for LP20412.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17511143..17511277 1..135 100 -> Plus
2R 17511345..17511997 136..788 100   Plus

LP20412.hyp Sequence

Translation from 0 to 272

> LP20412.hyp
LALKTISFATNHTMKVLLALTFLATLALSVALPQVGHGSVNGPSGRFPMT
KNWAQPPVDLRKPIIFLPEATPIHEAQESRPRLAKHRKSG*

LP20412.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG34193-PB 77 CG34193-PB 1..77 14..90 398 100 Plus
CG34193-PA 77 CG34193-PA 1..77 14..90 398 100 Plus

LP20412.pep Sequence

Translation from 0 to 272

> LP20412.pep
LALKTISFATNHTMKVLLALTFLATLALSVALPQVGHGSVNGPSGRFPMT
KNWAQPPVDLRKPIIFLPEATPIHEAQESRPRLAKHRKSG*

LP20412.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13131-PA 73 GF13131-PA 1..72 18..89 296 76.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20690-PA 77 GG20690-PA 1..77 14..90 291 89.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG34193-PB 77 CG34193-PB 1..77 14..90 398 100 Plus
CG34193-PA 77 CG34193-PA 1..77 14..90 398 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18586-PA 79 GI18586-PA 1..74 14..82 175 56.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11433-PA 78 GL11433-PA 1..76 14..88 236 72.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24727-PA 78 GA24727-PA 1..76 14..88 236 72.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21789-PA 77 GM21789-PA 1..77 14..90 333 94.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11279-PA 77 GD11279-PA 1..77 14..90 387 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20384-PA 75 GJ20384-PA 1..75 14..90 201 53.2 Plus
Dvir\GJ20383-PA 347 GJ20383-PA 302..344 44..86 139 60.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22907-PA 74 GK22907-PA 10..73 20..85 209 59.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11674-PA 77 GE11674-PA 1..77 14..90 381 94.8 Plus