Clone LP20617 Report

Search the DGRC for LP20617

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:206
Well:17
Vector:pOT2
Associated Gene/TranscriptCG32483-RA
Protein status:LP20617.pep: validated not full length
Sequenced Size:1397

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32483 2003-01-01 Sim4 clustering to Release 3
CG32483 2004-10-22 Blastp of sequenced clone
CG32483 2008-04-29 Release 5.5 accounting
CG32483 2008-08-15 Release 5.9 accounting
CG32483 2008-12-18 5.12 accounting

Clone Sequence Records

LP20617.complete Sequence

1397 bp (1397 high quality bases) assembled on 2004-10-22

GenBank Submission: BT016041

> LP20617.complete
TCGATTCGGTTGGTAGCACTCCTGGCATTGTTCGCCGCCTTGGCGCATGG
CAAACCCGGATACGGTCCCGGAGAGCAGGACTGGGGCTACGTAGATGTGC
GTCCCGGTGCCCACATGTTCTACTGGCTGTACTACACCACCGCCAATGTT
TCGAGCTATACCGAAAGACCATTAGCCATTTGGCTCCAAGGAGGTCCCGG
TGCCTCTTCGACGGGGTATGGAAACTTTGAAGAACTTGGGCCCGTCGATT
TGTACGGAGATTGGCGCAGCTGGACCTGGGTGAAGGACATGAATGTCCTC
TTTATTGACAACCCCGTAGGCAGTGGTTTTAGCTACGTGGACAACACGGC
CTTTTACACGGCCACCAATAAGGAGATCGCTCTAGATTTGGTTGAGCTGA
TGAAGGGATTCTATACCCTGCATCCAGAGTTCGAGGAGGTGCCGCTGCAT
ATATTCTGCGAGAGTTACGGTGGAAAGATGGCGCCGGAGTTTGCACTCGA
ACTGTACTACGCCAAGAAGCGTGGTGAGGTCAAGAGCAACCTTACCTCGG
TGGCTTTGGGGGATCCATGGACCTCGCCCATCGACTCCGTGCTCGCATGG
GGACCTTTTCTCAGAGAAATGGGAATCGTGGACCACGCGGGATACAATGC
CATTCAAGAGGCAGCGAACTTCACGGCTCAGTTGGTGGAGGAGGAGCGAT
GGATTCAGGCCACCTATCAGTGGGGCAACACCCAGTGGGAGGTGATGAAA
GCCTCCAAGGGTGTGGACTTCTACAACGTGCTGAAGGAGACAAAGGGTGG
TCTCTACCAGAGATCAAAGGCCTTGACCTCCGAAGAACGTCTGTATCGCA
CCATGGTGAAATACGATATTGATGAGGATCGAACCAAGTTACTGGAGGAT
CTGATGCGGGGCCCGGTGGCGGAAACCCTGGGTATACCTTCGAATGTCAT
CTGGGGATCGCAGAGTGGGACCACTTTTGACATCCACAGAACGGACTTCA
TGAAGCCAGTCATCCACATTGTGAACGAATTGCTGGAGAAGACTCCTCTG
AAGGTCGGCGTATTCTCCGGTGGCCTGGATTTGATTTGCGCCACACCGGG
CACCGTCAACTGGATAGCCAAGCTGGACTGGAGCCGAAAGGACGAGTACC
TGGCTGCTCCACGCAATGGCATCACGGTGGATCGCATCTTGGAGGGCTAT
CAAAAGACGGGCGGTAACTTTACCATGTTCTGGATCAACCGAAGTGGTCA
CATGGCTCCGGCGGACAACCCTGCGGCTATGAGTCATGTACTTCGAGAGT
TTACCTCATTTGGCTAAATTCATTTAAATTGAATTATAATAAACTCAGTA
TGCAAGCCAGTTGTATACTATATTCGTCTAAAAAAAAAAAAAAAAAA

LP20617.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG32483-RA 1492 CG32483-RA 107..1490 1..1384 6920 100 Plus
CG3344-RA 1689 CG3344-RA 313..476 67..230 385 82.3 Plus
CG3344-RA 1689 CG3344-RA 685..847 439..601 365 81.5 Plus
CG3344-RA 1689 CG3344-RA 516..588 270..342 215 86.3 Plus
CG3344-RA 1689 CG3344-RA 1309..1367 1057..1115 175 86.4 Plus
CG3344-RA 1689 CG3344-RA 601..659 355..413 160 84.7 Plus
CG3344-RA 1689 CG3344-RA 1094..1159 842..907 150 81.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 688995..689781 835..49 3935 100 Minus
chr3L 24539361 chr3L 688344..688702 1379..1021 1795 100 Minus
chr3L 24539361 chr3L 688756..688943 1021..834 940 100 Minus
chr3L 24539361 chr3L 686621..687155 601..67 890 77.8 Minus
chr3L 24539361 chr3L 689850..689899 50..1 250 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:58:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 689174..689960 835..49 3935 100 Minus
3L 28110227 3L 688518..688881 1384..1021 1820 100 Minus
3L 28110227 3L 688935..689122 1021..834 940 100 Minus
3L 28110227 3L 686821..687355 601..67 890 77.8 Minus
3L 28110227 3L 690029..690078 50..1 250 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 689174..689960 835..49 3935 100 Minus
3L 28103327 3L 688518..688881 1384..1021 1820 100 Minus
3L 28103327 3L 688935..689122 1021..834 940 100 Minus
3L 28103327 3L 687192..687355 230..67 385 82.3 Minus
3L 28103327 3L 686821..686983 601..439 365 81.5 Minus
3L 28103327 3L 690029..690078 50..1 250 100 Minus
3L 28103327 3L 687080..687152 342..270 215 86.3 Minus
3L 28103327 3L 686193..686251 1115..1057 175 86.4 Minus
3L 28103327 3L 687009..687067 413..355 160 84.7 Minus
2L 23513712 2L 15902220..15902305 149..64 160 79 Minus
3L 28103327 3L 686456..686521 907..842 150 81.8 Minus
2L 23513712 2L 15899753..15899817 501..437 145 81.5 Minus
Blast to na_te.dros performed on 2019-03-16 12:27:15 has no hits.

LP20617.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:28:12 Download gff for LP20617.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 688344..688701 1022..1379 100 <- Minus
chr3L 688756..688941 836..1021 100 <- Minus
chr3L 688995..689780 50..835 100 <- Minus
chr3L 689851..689899 1..49 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:44:01 Download gff for LP20617.complete
Subject Subject Range Query Range Percent Splice Strand
CG32483-RA 4..1320 1..1317 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:30:05 Download gff for LP20617.complete
Subject Subject Range Query Range Percent Splice Strand
CG32483-RA 4..1320 1..1317 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:25:02 Download gff for LP20617.complete
Subject Subject Range Query Range Percent Splice Strand
CG32483-RA 4..1320 1..1317 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:13:59 Download gff for LP20617.complete
Subject Subject Range Query Range Percent Splice Strand
CG32483-RA 4..1320 1..1317 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:45:54 Download gff for LP20617.complete
Subject Subject Range Query Range Percent Splice Strand
CG32483-RA 4..1320 1..1317 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:34:21 Download gff for LP20617.complete
Subject Subject Range Query Range Percent Splice Strand
CG32483-RA 4..1320 1..1317 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:30:05 Download gff for LP20617.complete
Subject Subject Range Query Range Percent Splice Strand
CG32483-RA 4..1382 1..1379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:25:02 Download gff for LP20617.complete
Subject Subject Range Query Range Percent Splice Strand
CG32483-RA 4..1382 1..1379 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:13:59 Download gff for LP20617.complete
Subject Subject Range Query Range Percent Splice Strand
CG32483-RA 4..1320 1..1317 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:45:54 Download gff for LP20617.complete
Subject Subject Range Query Range Percent Splice Strand
CG32483-RA 4..1382 1..1379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:28:12 Download gff for LP20617.complete
Subject Subject Range Query Range Percent Splice Strand
3L 688523..688880 1022..1379 100 <- Minus
3L 688935..689120 836..1021 100 <- Minus
3L 689174..689959 50..835 100 <- Minus
3L 690030..690078 1..49 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:28:12 Download gff for LP20617.complete
Subject Subject Range Query Range Percent Splice Strand
3L 688523..688880 1022..1379 100 <- Minus
3L 688935..689120 836..1021 100 <- Minus
3L 689174..689959 50..835 100 <- Minus
3L 690030..690078 1..49 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:28:12 Download gff for LP20617.complete
Subject Subject Range Query Range Percent Splice Strand
3L 688523..688880 1022..1379 100 <- Minus
3L 688935..689120 836..1021 100 <- Minus
3L 689174..689959 50..835 100 <- Minus
3L 690030..690078 1..49 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:25:02 Download gff for LP20617.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 689174..689959 50..835 100 <- Minus
arm_3L 690030..690078 1..49 100   Minus
arm_3L 688523..688880 1022..1379 100 <- Minus
arm_3L 688935..689120 836..1021 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:50:44 Download gff for LP20617.complete
Subject Subject Range Query Range Percent Splice Strand
3L 688523..688880 1022..1379 100 <- Minus
3L 688935..689120 836..1021 100 <- Minus
3L 689174..689959 50..835 100 <- Minus
3L 690030..690078 1..49 100   Minus

LP20617.pep Sequence

Translation from 0 to 1316

> LP20617.pep
SIRLVALLALFAALAHGKPGYGPGEQDWGYVDVRPGAHMFYWLYYTTANV
SSYTERPLAIWLQGGPGASSTGYGNFEELGPVDLYGDWRSWTWVKDMNVL
FIDNPVGSGFSYVDNTAFYTATNKEIALDLVELMKGFYTLHPEFEEVPLH
IFCESYGGKMAPEFALELYYAKKRGEVKSNLTSVALGDPWTSPIDSVLAW
GPFLREMGIVDHAGYNAIQEAANFTAQLVEEERWIQATYQWGNTQWEVMK
ASKGVDFYNVLKETKGGLYQRSKALTSEERLYRTMVKYDIDEDRTKLLED
LMRGPVAETLGIPSNVIWGSQSGTTFDIHRTDFMKPVIHIVNELLEKTPL
KVGVFSGGLDLICATPGTVNWIAKLDWSRKDEYLAAPRNGITVDRILEGY
QKTGGNFTMFWINRSGHMAPADNPAAMSHVLREFTSFG*

LP20617.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24074-PA 439 GF24074-PA 5..439 4..438 2135 89.7 Plus
Dana\GF24075-PA 446 GF24075-PA 7..446 2..438 1621 68.3 Plus
Dana\GF14968-PA 428 GF14968-PA 13..428 5..438 1090 47.5 Plus
Dana\GF14967-PA 430 GF14967-PA 8..424 2..437 892 42.8 Plus
Dana\GF17355-PA 478 GF17355-PA 85..476 29..437 381 29.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14645-PA 439 GG14645-PA 2..439 1..438 2277 96.3 Plus
Dere\GG14646-PA 446 GG14646-PA 24..446 18..438 1645 71.6 Plus
Dere\GG24186-PA 427 GG24186-PA 15..427 4..438 1120 49.7 Plus
Dere\GG24185-PA 425 GG24185-PA 6..419 5..437 919 44 Plus
Dere\GG15819-PA 482 GG15819-PA 89..480 29..437 402 28.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16039-PA 442 GH16039-PA 8..442 4..438 1988 83.9 Plus
Dgri\GH16040-PA 446 GH16040-PA 7..446 1..438 1624 67.1 Plus
Dgri\GH11350-PA 665 GH11350-PA 266..665 18..438 1135 52.6 Plus
Dgri\GH21639-PA 479 GH21639-PA 87..477 29..437 363 28.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG32483-PA 439 CG32483-PA 2..439 1..438 2356 100 Plus
hiro-PA 446 CG3344-PA 6..446 4..438 1663 70.3 Plus
CG31823-PA 427 CG31823-PA 15..427 8..438 1122 49.9 Plus
CG31821-PB 427 CG31821-PB 5..421 1..437 911 44.1 Plus
CG31821-PA 427 CG31821-PA 5..421 1..437 911 44.1 Plus
CG4572-PD 482 CG4572-PD 82..480 16..437 414 29 Plus
CG4572-PB 482 CG4572-PB 82..480 16..437 414 29 Plus
CG4572-PA 482 CG4572-PA 82..480 16..437 414 29 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12302-PA 442 GI12302-PA 8..442 4..438 2025 85.5 Plus
Dmoj\GI12303-PA 442 GI12303-PA 6..442 2..438 1642 68.8 Plus
Dmoj\GI12304-PA 450 GI12304-PA 6..443 2..438 1634 67.9 Plus
Dmoj\GI17365-PA 422 GI17365-PA 23..422 17..438 1125 51.7 Plus
Dmoj\GI20092-PA 478 GI20092-PA 84..476 29..437 385 28.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20837-PA 439 GL20837-PA 5..439 4..438 2107 89.4 Plus
Dper\GL20838-PA 445 GL20838-PA 6..445 2..438 1653 69.3 Plus
Dper\GL15326-PA 426 GL15326-PA 25..426 17..438 1131 50.9 Plus
Dper\GL15319-PA 415 GL15319-PA 8..415 4..438 974 44.4 Plus
Dper\GL15325-PA 426 GL15325-PA 5..421 1..437 892 43.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16937-PA 439 GA16937-PA 5..439 4..438 2103 89.2 Plus
Dpse\GA17392-PA 445 GA17392-PA 6..445 2..438 1653 69.3 Plus
Dpse\GA16505-PA 426 GA16505-PA 25..426 17..438 1131 50.9 Plus
Dpse\GA16504-PA 426 GA16504-PA 5..421 1..437 894 43.8 Plus
Dpse\GA28793-PA 399 GA28793-PA 8..399 4..438 867 41.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14261-PA 446 GM14261-PA 24..446 18..438 1634 71.2 Plus
Dsec\GM17924-PA 427 GM17924-PA 15..427 8..438 1134 50.3 Plus
Dsec\GM17923-PA 425 GM17923-PA 6..419 5..437 912 45.6 Plus
Dsec\GM14260-PA 262 GM14260-PA 2..162 1..161 854 98.8 Plus
Dsec\GM14260-PA 262 GM14260-PA 165..262 341..438 516 98 Plus
Dsec\GM26891-PA 482 GM26891-PA 89..480 29..437 417 29.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13517-PA 439 GD13517-PA 2..439 1..438 2311 98.2 Plus
Dsim\GD13518-PA 446 GD13518-PA 24..446 18..438 1629 70.9 Plus
Dsim\GD11968-PA 285 GD11968-PA 1..285 134..438 718 46.9 Plus
Dsim\GD20098-PA 482 GD20098-PA 89..480 29..437 409 29.7 Plus
Dsim\GD21932-PA 123 GD21932-PA 18..123 333..438 350 55.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13239-PA 442 GJ13239-PA 4..442 1..438 2060 86.3 Plus
Dvir\GJ13240-PA 444 GJ13240-PA 6..444 2..438 1660 68.9 Plus
Dvir\GJ18041-PA 478 GJ18041-PA 70..478 9..438 1135 51.3 Plus
Dvir\GJ19859-PA 479 GJ19859-PA 85..477 29..437 388 28.2 Plus
Dvir\GJ22150-PA 481 GJ22150-PA 91..479 31..437 322 27.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16682-PA 442 GK16682-PA 8..442 4..438 2062 87.4 Plus
Dwil\GK16683-PA 445 GK16683-PA 2..445 1..438 1657 67.3 Plus
Dwil\GK24263-PA 426 GK24263-PA 10..426 5..438 1116 49.7 Plus
Dwil\GK24262-PA 428 GK24262-PA 5..420 3..437 905 43.9 Plus
Dwil\GK22811-PA 481 GK22811-PA 92..479 31..437 378 28 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21005-PA 439 GE21005-PA 2..439 1..438 2290 97 Plus
Dyak\GE21006-PA 446 GE21006-PA 24..446 18..438 1642 71.2 Plus
Dyak\GE19379-PA 427 GE19379-PA 19..427 10..438 1124 49.2 Plus
Dyak\GE19378-PA 425 GE19378-PA 6..419 5..437 933 46.2 Plus
Dyak\GE25110-PA 482 GE25110-PA 89..480 29..437 407 29.2 Plus

LP20617.hyp Sequence

Translation from 0 to 1316

> LP20617.hyp
SIRLVALLALFAALAHGKPGYGPGEQDWGYVDVRPGAHMFYWLYYTTANV
SSYTERPLAIWLQGGPGASSTGYGNFEELGPVDLYGDWRSWTWVKDMNVL
FIDNPVGSGFSYVDNTAFYTATNKEIALDLVELMKGFYTLHPEFEEVPLH
IFCESYGGKMAPEFALELYYAKKRGEVKSNLTSVALGDPWTSPIDSVLAW
GPFLREMGIVDHAGYNAIQEAANFTAQLVEEERWIQATYQWGNTQWEVMK
ASKGVDFYNVLKETKGGLYQRSKALTSEERLYRTMVKYDIDEDRTKLLED
LMRGPVAETLGIPSNVIWGSQSGTTFDIHRTDFMKPVIHIVNELLEKTPL
KVGVFSGGLDLICATPGTVNWIAKLDWSRKDEYLAAPRNGITVDRILEGY
QKTGGNFTMFWINRSGHMAPADNPAAMSHVLREFTSFG*

LP20617.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32483-PA 439 CG32483-PA 2..439 1..438 2356 100 Plus
CG3344-PA 446 CG3344-PA 6..446 4..438 1663 70.3 Plus
CG31823-PA 427 CG31823-PA 15..427 8..438 1122 49.9 Plus
CG31821-PB 427 CG31821-PB 5..421 1..437 911 44.1 Plus
CG31821-PA 427 CG31821-PA 5..421 1..437 911 44.1 Plus