Clone LP20905 Report

Search the DGRC for LP20905

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:209
Well:5
Vector:pOT2
Associated Gene/TranscriptCG32812-RA
Protein status:LP20905.pep: gold
Sequenced Size:1616

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32812 2003-01-01 Sim4 clustering to Release 3
CG32812 2005-01-26 Blastp of sequenced clone
CG32812 2008-04-29 Release 5.5 accounting

Clone Sequence Records

LP20905.complete Sequence

1616 bp (1616 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021346

> LP20905.complete
AAGTAGTGTCTGCTAGGCTTGTTAGCCGTCAAAGTCCTGCCTTGTCCGTT
TAACGAACACTTTACCTTGCCCTCCAACCTTGCCAGCGGACAGGCACGCA
ACGAAAGCGGGCCAATTAGTTTGGTTGGACACCAGGGAGGGTTGGCGGAG
TCTCGTCAACTGGCAGCTGGCCAAGGCGCACGCACTGTGGCGTCTCCGTC
GCCCCTGGAGCGGGGCATCAGGTGACGTGGGCGGTTGGGGAGGGGTCGGA
AGATATAGCACTTTTGTTATAGTGCGTCAGAGGCGACGACGACGATGGCG
CGGAAGTAGCTGGCCACCGCCCTTGCCCCTCTCCTACTCGTATGCCAGCA
ACCTGTGGCCTTGACAGCGCCCGTTTTGATTTATGCGGCATTTTGCAAAA
GTCAACAAATGAAAATGACACAGAAATAATGCCAAGAGAGCTGTTTTCCA
CTATTCCGATTTCTTTTGCCCCAAGGTCAGGCGCACAAATAGATGTCGGC
AGTGCCACCCGCTGGACCTCCGCCATGGATACAGATTCCATATGTACTCC
CTGCATCACAATGGCATGCTCCTTACCAATTAGAAGCAGTTTCAAGATAT
CACGGATTCGTTTAAAACAGCACTGGGATCAGAATTCCGATTGAGAATAC
TTGTAAGTCCCGAAACGGAAACTCATCGAGTAATTGAAACCAAACCGGCA
TGGGCTCGGTAGGAAGTCGTCAGCTCAACCCCGTCCAACTGTGTGACCAC
CAGCAGGCCACAGGGCTGTCCGCAGAGCAGCTAGAGCAGCTGCACACGCG
GTTCCGCAGCCTGGATCGCCACCAGCGCGGCTATTTGACGCCCACCGACT
TGCTGCGCATTCCGCAGCTATCCCTCAACCCGCTTCACCGCCAGATCATC
GACGGCTTCTTCCCCAGCCGTGACCCCAGCGCGCGTATCGGTTTCAAGCA
GTTCGTGGACACTTGCTCCACCATTTTGGTGCCACAGTTTGGACGCGGTT
CAGTGAGGCGGCGCGACGGGCGTGTTCAGAAGCTTCAACTCCTGTCCAAG
ATGTTTGACACGAGGCGCAGCGGCTGCATCACACGCTCCGACTTCCGCCA
GATCATGCGCAGCATTGTCAATCTGGCCTGGAGTCAGCAACAGGATCAGG
AACGTCAGGAGGGGCTTTCCGAGAACCGTTTGCCTGAGGTGGAGGCCGAG
TTGCAACTTTTAGAGCATCAGGCCTTTGGCTTCTGCTGCGACCATATCTC
ATATGGGGAGTTCGAGAAGCGCCTGTTTAGTGTGGACGTCGACAGACGGC
TGTCGATCGCCAAGTGGCTGGAGGACGATGACGAGGCCGATGCCGAGATG
GTACTGCCAGTTGGCTCAGGCCCGTAAAGCACCACACGCCAAAACACTCA
CATGTTGTGTTTGTGTTTTCAATATACCATTCACTTCCATCCAGTGAGAT
AGGAATCAGGGAATCCTCCTTTATCGGTGTGGGTACTAGGAAAATTGTAG
TCCAAATTGAGCAAATATAATTTAAGTCCTTACATTTAAGTTACAAAGGA
ATTAGGTCACAAAATCGTATGCGTTAAGTAAAAATATTATGAACCACCGA
AAAAAAAAAAAAAAAA

LP20905.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32812-RA 1661 CG32812-RA 63..1661 1..1599 7995 100 Plus
CG32812.a 1967 CG32812.a 369..1967 1..1599 7995 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1181966..1182921 644..1599 4780 100 Plus
chrX 22417052 chrX 1181266..1181910 1..645 3225 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:58:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1287990..1288947 644..1601 4790 100 Plus
X 23542271 X 1287290..1287934 1..645 3225 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1296088..1297045 644..1601 4790 100 Plus
X 23527363 X 1295388..1296032 1..645 3225 100 Plus
Blast to na_te.dros performed on 2019-03-16 03:02:04 has no hits.

LP20905.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:03:19 Download gff for LP20905.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1181266..1181910 1..645 100 -> Plus
chrX 1181968..1182921 646..1599 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:44:05 Download gff for LP20905.complete
Subject Subject Range Query Range Percent Splice Strand
CG32812-RA 1..678 700..1377 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:12:09 Download gff for LP20905.complete
Subject Subject Range Query Range Percent Splice Strand
CG32812-RA 1..678 700..1377 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:41:43 Download gff for LP20905.complete
Subject Subject Range Query Range Percent Splice Strand
CG32812-RA 1..678 700..1377 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:56:44 Download gff for LP20905.complete
Subject Subject Range Query Range Percent Splice Strand
CG32812-RA 1..678 700..1377 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:28:30 Download gff for LP20905.complete
Subject Subject Range Query Range Percent Splice Strand
CG32812-RA 1..678 700..1377 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:06:42 Download gff for LP20905.complete
Subject Subject Range Query Range Percent Splice Strand
CG32812-RA 1..678 700..1377 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:12:09 Download gff for LP20905.complete
Subject Subject Range Query Range Percent Splice Strand
CG32812-RA 1..1599 1..1599 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:41:43 Download gff for LP20905.complete
Subject Subject Range Query Range Percent Splice Strand
CG32812-RA 1..1599 1..1599 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:56:44 Download gff for LP20905.complete
Subject Subject Range Query Range Percent Splice Strand
CG32812-RA 1..678 700..1377 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:28:30 Download gff for LP20905.complete
Subject Subject Range Query Range Percent Splice Strand
CG32812-RA 1..1599 1..1599 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:19 Download gff for LP20905.complete
Subject Subject Range Query Range Percent Splice Strand
X 1287290..1287934 1..645 100 -> Plus
X 1287992..1288945 646..1599 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:19 Download gff for LP20905.complete
Subject Subject Range Query Range Percent Splice Strand
X 1287290..1287934 1..645 100 -> Plus
X 1287992..1288945 646..1599 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:19 Download gff for LP20905.complete
Subject Subject Range Query Range Percent Splice Strand
X 1287290..1287934 1..645 100 -> Plus
X 1287992..1288945 646..1599 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:41:43 Download gff for LP20905.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1181323..1181967 1..645 100 -> Plus
arm_X 1182025..1182978 646..1599 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:32:04 Download gff for LP20905.complete
Subject Subject Range Query Range Percent Splice Strand
X 1295388..1296032 1..645 100 -> Plus
X 1296090..1297043 646..1599 100   Plus

LP20905.pep Sequence

Translation from 699 to 1376

> LP20905.pep
MGSVGSRQLNPVQLCDHQQATGLSAEQLEQLHTRFRSLDRHQRGYLTPTD
LLRIPQLSLNPLHRQIIDGFFPSRDPSARIGFKQFVDTCSTILVPQFGRG
SVRRRDGRVQKLQLLSKMFDTRRSGCITRSDFRQIMRSIVNLAWSQQQDQ
ERQEGLSENRLPEVEAELQLLEHQAFGFCCDHISYGEFEKRLFSVDVDRR
LSIAKWLEDDDEADAEMVLPVGSGP*

LP20905.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21441-PA 272 GF21441-PA 1..213 1..210 589 61.5 Plus
Dana\GF17404-PA 189 GF17404-PA 1..185 1..203 228 32.4 Plus
Dana\GF13200-PA 170 GF13200-PA 1..130 4..148 139 25.2 Plus
Dana\GF19757-PA 170 GF19757-PA 1..130 4..148 139 25.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12841-PA 235 GG12841-PA 1..235 1..225 789 79.6 Plus
Dere\GG10903-PA 189 GG10903-PA 1..185 1..203 228 32.4 Plus
Dere\GG23301-PA 170 GG23301-PA 1..130 4..148 139 25.2 Plus
Dere\GG18755-PA 170 GG18755-PA 1..130 4..148 139 25.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17638-PA 204 GH17638-PA 1..204 1..207 438 47 Plus
Dgri\GH19192-PA 189 GH19192-PA 1..185 1..203 216 31.9 Plus
Dgri\GH24615-PA 170 GH24615-PA 1..130 4..148 139 25.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG32812-PB 225 CG32812-PB 1..225 1..225 1171 100 Plus
CG32812-PA 225 CG32812-PA 1..225 1..225 1171 100 Plus
elm-PB 189 CG2185-PB 1..185 1..203 228 31.4 Plus
elm-PA 189 CG2185-PA 1..185 1..203 228 31.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24225-PA 189 GI24225-PA 1..185 1..203 224 32.4 Plus
Dmoj\GI11077-PA 170 GI11077-PA 1..130 4..148 139 25.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14238-PA 227 GL14238-PA 1..204 1..213 433 45.9 Plus
Dper\GL14239-PA 225 GL14239-PA 2..202 4..213 422 45.7 Plus
Dper\GL23144-PA 189 GL23144-PA 1..185 1..203 224 32.4 Plus
Dper\GL10837-PA 170 GL10837-PA 1..130 4..148 139 25.2 Plus
Dper\GL14682-PA 170 GL14682-PA 1..130 4..148 139 25.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17158-PA 230 GA17158-PA 1..204 1..213 438 46.4 Plus
Dpse\GA27156-PA 189 GA27156-PA 1..185 1..203 224 32.4 Plus
Dpse\GA18033-PA 170 GA18033-PA 1..130 4..148 139 25.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19124-PA 225 GM19124-PA 1..225 1..225 1135 96.4 Plus
Dsec\GM10603-PA 72 GM10603-PA 1..71 1..71 144 40.8 Plus
Dsec\GM20979-PA 170 GM20979-PA 1..130 4..148 139 25.2 Plus
Dsec\GM12403-PA 170 GM12403-PA 1..130 4..148 139 25.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24711-PA 108 GD24711-PA 1..108 118..225 532 93.5 Plus
Dsim\GD19593-PA 189 GD19593-PA 1..185 1..203 230 32.4 Plus
Dsim\GD15356-PA 170 GD15356-PA 1..130 4..148 139 25.2 Plus
Dsim\GD10507-PA 170 GD10507-PA 1..130 4..148 139 25.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15723-PA 228 GJ15723-PA 1..222 1..209 515 50 Plus
Dvir\GJ10797-PA 189 GJ10797-PA 1..185 1..203 222 32.4 Plus
Dvir\GJ21239-PA 177 GJ21239-PA 6..137 2..148 139 25.5 Plus
Dvir\GJ14779-PA 170 GJ14779-PA 1..130 4..148 139 25.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19964-PA 251 GK19964-PA 1..205 1..213 541 54 Plus
Dwil\GK10850-PA 189 GK10850-PA 1..185 1..203 222 32.4 Plus
Dwil\GK21716-PA 170 GK21716-PA 1..130 4..148 139 25.2 Plus
Dwil\GK10056-PA 170 GK10056-PA 1..130 4..148 139 25.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16675-PA 228 GE16675-PA 1..228 1..225 994 86 Plus
Dyak\GE24150-PA 189 GE24150-PA 1..185 1..203 228 32.4 Plus
Dyak\GE19147-PA 170 GE19147-PA 1..130 4..148 139 25.2 Plus
Dyak\GE16397-PA 170 GE16397-PA 1..130 4..148 139 25.9 Plus

LP20905.hyp Sequence

Translation from 699 to 1376

> LP20905.hyp
MGSVGSRQLNPVQLCDHQQATGLSAEQLEQLHTRFRSLDRHQRGYLTPTD
LLRIPQLSLNPLHRQIIDGFFPSRDPSARIGFKQFVDTCSTILVPQFGRG
SVRRRDGRVQKLQLLSKMFDTRRSGCITRSDFRQIMRSIVNLAWSQQQDQ
ERQEGLSENRLPEVEAELQLLEHQAFGFCCDHISYGEFEKRLFSVDVDRR
LSIAKWLEDDDEADAEMVLPVGSGP*

LP20905.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG32812-PB 225 CG32812-PB 1..225 1..225 1171 100 Plus
CG32812-PA 225 CG32812-PA 1..225 1..225 1171 100 Plus
elm-PB 189 CG2185-PB 1..185 1..203 228 31.4 Plus
elm-PA 189 CG2185-PA 1..185 1..203 228 31.4 Plus