Clone LP20964 Report

Search the DGRC for LP20964

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:209
Well:64
Vector:pOT2
Associated Gene/TranscriptCG6996-RB
Protein status:LP20964.pep: gold
Sequenced Size:1379

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6996 2008-04-29 Release 5.5 accounting
CG6996 2008-04-29 Picked prior to 5.5

Clone Sequence Records

LP20964.complete Sequence

1379 bp assembled on 2007-10-25

GenBank Submission: BT031150

> LP20964.complete
TTAGACGTTCTTTTCCTCGTTAGCCGTTAAGAGGTACTTGTATCTTTGGA
ATACTAAAAGTTTGCTGAACTCGAGATGGACACAAAGCTCGCCTTCATTT
CCGGACTCATCATGATCCCCACGATATCAGGCGCCCTGACCTTCAATGCA
ACTCTAATATGTAGCTTGGTGGTCAACGGAACCAAGATGAACGATCCTCG
GGCGTGCAACGCGTGGATTCAGTGCATCGATGGGAGCCCTGTGAGTGGTA
GCTGTGCGACTGGACTCTTCTACGACCGGGAGAGCCAGAAATGCCTGAGT
TCCAGTAGTATCAAGTGTCTGTCCAGTGATCCGTGCGCTGCTCTGCCCAC
CGGATTCGCGGCTGATCCGTACTCCTGCAATGGTTATTACTATTGCAAGG
ATGGCAAGGGGACGCACGGAGTGTGCAACACTGGGATGAATTTCAATTCG
GGAACGCAGGACTGCATCCGCGATTTTCCGTGCTCGAATAAAATGGACCC
GGATAGCTATTGCAACATCTTGCCGGATGGGGTCTTCGTCAAGGACACGG
ACAACTGCAATGGCTATCAGTTGTGCTGGGATGGCCAGGTGATCAATGGA
ACCTGTCCGGGCACCTTCTACTTCAAGGCCTCCACGGCCCAGTGCGATTA
TCCGCAGAATGTGGAGTGTGACTTCGTCCCAGTGCCAGATATTAGCAAGA
AGGGTGTATGTCCAGAGACGGGTGGATTTATATCGGATAACAAGACCTGC
AATGGCTACTACTACTGCAAGGATTTGGGCAATGGAGAGTTCTCGCTGGA
GCATGGCGTCTGCTCCGATGGAAGATTTTTCCTGGCCACCGATGGCGGAG
CCTGTGTCCCGCGATCCAAGGTGAAATGCGGCTACGATCGATGCGTGGGC
TTGGGCAATTCCACCATTCAGCTGGCCAACGAGTCGGATGATGGCTGCAG
GGGCTACTCGATCTGCCAGGATGGCATCGTCATTGGCCAAGGAACTTGTC
CGCAGGACGAGTACTTCGACGAAATAACCCAACGGTGCACCACCCAGGTC
ATATCATATACCGCCTGTCAGATATCGGAGGCAACCACCGGGTCCCAAGT
TCCAAGTGGCACCACCACCACCACCAGCAGCACCATCACTAGCACCACCA
TTGCGGTCCCGGTGTCGTGAGCAGCTCCTCATAAGTATAAGTAGTGCTGT
TATCAGGCCCAAGTCCCATACAAATTATAGATCAGCTCTTTGTTTAGATT
TCGTGGAATTGATCACAATACAAACATCTGAATTTTCAAATGTATTTAGG
TATAAAAAGATTATTTCGAAAAGCTTAGTTGTACGATTAAAAGTTGACTC
ATTTGTGAACCAAAAAAAAAAAAAAAAAA

LP20964.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6996.a 1572 CG6996.a 168..1529 1..1362 6810 100 Plus
CG6996.b 1980 CG6996.b 168..1529 1..1362 6810 100 Plus
CG6996.c 1811 CG6996.c 168..1529 1..1362 6810 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20197046..20198328 79..1361 6415 100 Plus
chr3L 24539361 chr3L 20196729..20196807 1..79 395 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:58:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20207867..20209150 79..1362 6420 100 Plus
3L 28110227 3L 20207550..20207628 1..79 395 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20200967..20202250 79..1362 6420 100 Plus
3L 28103327 3L 20200650..20200728 1..79 395 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:39:25 has no hits.

LP20964.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:40:27 Download gff for LP20964.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20196729..20196807 1..79 100 -> Plus
chr3L 20197047..20198328 80..1361 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:44:06 Download gff for LP20964.complete
Subject Subject Range Query Range Percent Splice Strand
CG6996-RA 1..1059 112..1170 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:05:54 Download gff for LP20964.complete
Subject Subject Range Query Range Percent Splice Strand
CG6996-RB 1..1095 76..1170 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:55 Download gff for LP20964.complete
Subject Subject Range Query Range Percent Splice Strand
CG6996-RB 1..1095 76..1170 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:52:11 Download gff for LP20964.complete
Subject Subject Range Query Range Percent Splice Strand
CG6996-RA 1..1059 112..1170 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:20 Download gff for LP20964.complete
Subject Subject Range Query Range Percent Splice Strand
CG6996-RB 1..1095 76..1170 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:00:30 Download gff for LP20964.complete
Subject Subject Range Query Range Percent Splice Strand
CG6996-RA 1..1059 112..1170 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:05:54 Download gff for LP20964.complete
Subject Subject Range Query Range Percent Splice Strand
CG6996-RB 24..1384 1..1361 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:55 Download gff for LP20964.complete
Subject Subject Range Query Range Percent Splice Strand
CG6996-RB 17..1377 1..1361 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:52:11 Download gff for LP20964.complete
Subject Subject Range Query Range Percent Splice Strand
CG6996-RA 1..1059 112..1170 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:20 Download gff for LP20964.complete
Subject Subject Range Query Range Percent Splice Strand
CG6996-RB 17..1377 1..1361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:40:27 Download gff for LP20964.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20207550..20207628 1..79 100 -> Plus
3L 20207868..20209149 80..1361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:40:27 Download gff for LP20964.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20207550..20207628 1..79 100 -> Plus
3L 20207868..20209149 80..1361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:40:27 Download gff for LP20964.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20207550..20207628 1..79 100 -> Plus
3L 20207868..20209149 80..1361 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:55 Download gff for LP20964.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20200650..20200728 1..79 100 -> Plus
arm_3L 20200968..20202249 80..1361 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:58:07 Download gff for LP20964.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20200968..20202249 80..1361 100   Plus
3L 20200650..20200728 1..79 100 -> Plus

LP20964.hyp Sequence

Translation from 75 to 1169

> LP20964.hyp
MDTKLAFISGLIMIPTISGALTFNATLICSLVVNGTKMNDPRACNAWIQC
IDGSPVSGSCATGLFYDRESQKCLSSSSIKCLSSDPCAALPTGFAADPYS
CNGYYYCKDGKGTHGVCNTGMNFNSGTQDCIRDFPCSNKMDPDSYCNILP
DGVFVKDTDNCNGYQLCWDGQVINGTCPGTFYFKASTAQCDYPQNVECDF
VPVPDISKKGVCPETGGFISDNKTCNGYYYCKDLGNGEFSLEHGVCSDGR
FFLATDGGACVPRSKVKCGYDRCVGLGNSTIQLANESDDGCRGYSICQDG
IVIGQGTCPQDEYFDEITQRCTTQVISYTACQISEATTGSQVPSGTTTTT
SSTITSTTIAVPVS*

LP20964.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6996-PC 364 CG6996-PC 1..364 1..364 2016 100 Plus
CG6996-PB 364 CG6996-PB 1..364 1..364 2016 100 Plus
CG17145-PB 334 CG17145-PB 3..333 4..332 468 34.6 Plus
CG17145-PA 334 CG17145-PA 3..333 4..332 468 34.6 Plus
CG5883-PA 339 CG5883-PA 34..337 28..331 425 32.4 Plus
CG17145-PB 334 CG17145-PB 41..290 97..346 175 27.7 Plus
CG17145-PA 334 CG17145-PA 41..290 97..346 175 27.7 Plus

LP20964.pep Sequence

Translation from 75 to 1169

> LP20964.pep
MDTKLAFISGLIMIPTISGALTFNATLICSLVVNGTKMNDPRACNAWIQC
IDGSPVSGSCATGLFYDRESQKCLSSSSIKCLSSDPCAALPTGFAADPYS
CNGYYYCKDGKGTHGVCNTGMNFNSGTQDCIRDFPCSNKMDPDSYCNILP
DGVFVKDTDNCNGYQLCWDGQVINGTCPGTFYFKASTAQCDYPQNVECDF
VPVPDISKKGVCPETGGFISDNKTCNGYYYCKDLGNGEFSLEHGVCSDGR
FFLATDGGACVPRSKVKCGYDRCVGLGNSTIQLANESDDGCRGYSICQDG
IVIGQGTCPQDEYFDEITQRCTTQVISYTACQISEATTGSQVPSGTTTTT
SSTITSTTIAVPVS*

LP20964.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25312-PA 347 GF25312-PA 1..338 1..338 1380 72.2 Plus
Dana\GF24498-PA 340 GF24498-PA 17..338 12..331 354 30.6 Plus
Dana\GF25313-PA 317 GF25313-PA 23..316 19..331 351 31.8 Plus
Dana\GF24480-PA 459 GF24480-PA 1..334 1..321 339 30.3 Plus
Dana\GF25314-PA 336 GF25314-PA 32..332 28..331 331 30 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16084-PA 352 GG16084-PA 1..352 1..352 1671 88.9 Plus
Dere\GG16087-PA 333 GG16087-PA 29..333 28..332 377 34.1 Plus
Dere\GG13869-PA 322 GG13869-PA 17..320 28..331 321 30.1 Plus
Dere\GG13334-PA 359 GG13334-PA 1..359 1..333 303 26.6 Plus
Dere\GG16088-PA 336 GG16088-PA 31..327 28..326 301 28.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16336-PA 324 GH16336-PA 1..305 38..338 1011 62.6 Plus
Dgri\GH16338-PA 304 GH16338-PA 1..295 28..326 383 32.6 Plus
Dgri\GH16337-PA 143 GH16337-PA 8..142 200..335 382 55.8 Plus
Dgri\GH15115-PA 336 GH15115-PA 10..334 26..331 349 31.5 Plus
Dgri\GH11417-PA 302 GH11417-PA 1..302 31..331 343 30.6 Plus
Dgri\GH16336-PA 324 GH16336-PA 104..288 23..190 155 29.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6996-PC 364 CG6996-PC 1..364 1..364 2016 100 Plus
CG6996-PB 364 CG6996-PB 1..364 1..364 2016 100 Plus
CG17145-PB 334 CG17145-PB 3..333 4..332 468 34.6 Plus
CG17145-PA 334 CG17145-PA 3..333 4..332 468 34.6 Plus
CG5883-PA 339 CG5883-PA 34..337 28..331 425 32.4 Plus
CG7290-PB 419 CG7290-PB 27..367 24..358 400 29.3 Plus
CG7290-PA 419 CG7290-PA 27..367 24..358 400 29.3 Plus
CG17147-PB 337 CG17147-PB 31..333 28..331 340 28.9 Plus
CG7017-PB 359 CG7017-PB 32..359 28..333 323 27.2 Plus
CG7017-PA 359 CG7017-PA 32..359 28..333 323 27.2 Plus
CG7298-PA 369 CG7298-PA 28..366 23..353 309 27.6 Plus
CG6933-PE 351 CG6933-PE 39..351 38..337 303 26.1 Plus
CG6933-PB 351 CG6933-PB 39..351 38..337 303 26.1 Plus
CG6933-PA 351 CG6933-PA 39..351 38..337 303 26.1 Plus
CG6933-PD 363 CG6933-PD 51..363 38..337 303 26.1 Plus
CG6933-PC 363 CG6933-PC 51..363 38..337 303 26.1 Plus
CG5897-PC 343 CG5897-PC 29..339 29..331 286 27.6 Plus
CG10725-PB 269 CG10725-PB 26..238 28..231 226 27.7 Plus
CG43896-PB 1324 CG43896-PB 286..582 25..315 222 28 Plus
CG43896-PD 2113 CG43896-PD 286..582 25..315 222 28 Plus
CG43896-PC 2113 CG43896-PC 286..582 25..315 222 28 Plus
CG43896-PB 1324 CG43896-PB 92..416 25..352 210 23.8 Plus
CG43896-PD 2113 CG43896-PD 92..416 25..352 210 23.8 Plus
CG43896-PC 2113 CG43896-PC 92..416 25..352 210 23.8 Plus
CG43896-PB 1324 CG43896-PB 40..350 41..339 202 23.9 Plus
CG43896-PD 2113 CG43896-PD 40..350 41..339 202 23.9 Plus
CG43896-PC 2113 CG43896-PC 40..350 41..339 202 23.9 Plus
CG17826-PA 751 CG17826-PA 98..442 5..321 199 22.2 Plus
CG7248-PA 796 CG7248-PA 43..358 65..342 197 25.2 Plus
CG17826-PA 751 CG17826-PA 83..336 33..321 196 23 Plus
CG31077-PB 988 CG31077-PB 617..974 2..325 191 24.9 Plus
CG10140-PA 297 CG10140-PA 46..271 19..237 189 25.8 Plus
CG31077-PB 988 CG31077-PB 39..301 35..321 184 24.7 Plus
CG17826-PA 751 CG17826-PA 307..548 44..321 182 23.5 Plus
CG17826-PA 751 CG17826-PA 358..603 40..321 180 22.7 Plus
CG43896-PB 1324 CG43896-PB 152..497 28..359 179 20.6 Plus
CG43896-PD 2113 CG43896-PD 152..497 28..359 179 20.6 Plus
CG43896-PC 2113 CG43896-PC 152..497 28..359 179 20.6 Plus
CG7290-PB 419 CG7290-PB 150..365 19..227 178 24.5 Plus
CG7290-PA 419 CG7290-PA 150..365 19..227 178 24.5 Plus
CG31077-PB 988 CG31077-PB 91..365 31..331 178 26.3 Plus
CG43896-PB 1324 CG43896-PB 543..762 28..263 177 24.2 Plus
CG43896-PD 2113 CG43896-PD 543..762 28..263 177 24.2 Plus
CG43896-PC 2113 CG43896-PC 543..762 28..263 177 24.2 Plus
CG17145-PB 334 CG17145-PB 41..290 97..346 175 27.7 Plus
CG17145-PA 334 CG17145-PA 41..290 97..346 175 27.7 Plus
CG5897-PC 343 CG5897-PC 89..280 28..200 171 28 Plus
CG31077-PB 988 CG31077-PB 20..249 73..325 169 23.9 Plus
Muc68D-PB 1514 CG6004-PB 1314..1498 87..252 169 28.1 Plus
CG43896-PD 2113 CG43896-PD 1755..2096 33..326 166 22.8 Plus
CG43896-PC 2113 CG43896-PC 1755..2096 33..326 166 22.8 Plus
CG17826-PA 751 CG17826-PA 519..714 44..247 164 25.4 Plus
CG7290-PB 419 CG7290-PB 21..240 135..357 163 24.6 Plus
CG7290-PA 419 CG7290-PA 21..240 135..357 163 24.6 Plus
CG7252-PA 474 CG7252-PA 181..457 35..252 158 21.9 Plus
CG17826-PA 751 CG17826-PA 565..751 34..198 156 24.7 Plus
Muc68D-PB 1514 CG6004-PB 1314..1505 29..190 156 24.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11528-PA 316 GI11528-PA 1..316 38..356 1125 64.7 Plus
Dmoj\GI11529-PA 334 GI11529-PA 1..325 1..326 374 31.2 Plus
Dmoj\GI14568-PA 335 GI14568-PA 4..335 5..331 357 29.6 Plus
Dmoj\GI13577-PA 353 GI13577-PA 34..342 28..334 341 32.7 Plus
Dmoj\GI14343-PA 414 GI14343-PA 27..323 23..321 294 29.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25118-PA 371 GL25118-PA 1..340 1..342 1312 67.8 Plus
Dper\GL25119-PA 336 GL25119-PA 10..336 5..331 369 32 Plus
Dper\GL25120-PA 338 GL25120-PA 17..326 11..326 355 31.1 Plus
Dper\GL25071-PA 337 GL25071-PA 32..335 28..331 351 32.5 Plus
Dper\GL25049-PA 401 GL25049-PA 78..396 28..331 332 29.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20015-PA 369 GA20015-PA 1..340 1..342 1317 68.1 Plus
Dpse\GA14346-PA 336 GA14346-PA 10..336 5..331 371 32 Plus
Dpse\GA23689-PA 338 GA23689-PA 17..326 11..326 350 30.8 Plus
Dpse\GA19200-PA 337 GA19200-PA 32..335 28..331 349 31.9 Plus
Dpse\GA20035-PA 394 GA20035-PA 71..389 28..331 330 29.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22259-PA 360 GM22259-PA 1..360 1..364 1732 92 Plus
Dsec\GM22260-PA 341 GM22260-PA 36..340 28..332 384 34.4 Plus
Dsec\GM24691-PA 340 GM24691-PA 17..338 12..331 350 32 Plus
Dsec\GM22240-PA 419 GM22240-PA 7..334 3..325 333 30.2 Plus
Dsec\GM22261-PA 338 GM22261-PA 2..329 1..326 303 28.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14858-PA 358 GD14858-PA 1..344 1..344 1674 93.6 Plus
Dsim\GD14859-PA 334 GD14859-PA 3..333 4..332 386 32.9 Plus
Dsim\GD12761-PA 340 GD12761-PA 17..338 12..331 345 31.7 Plus
Dsim\GD12212-PA 419 GD12212-PA 7..334 3..325 328 29.9 Plus
Dsim\GD14860-PA 338 GD14860-PA 2..329 1..326 288 27.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11547-PA 349 GJ11547-PA 24..343 20..338 1180 66.2 Plus
Dvir\GJ17080-PA 329 GJ17080-PA 27..329 28..331 400 34 Plus
Dvir\GJ11548-PA 334 GJ11548-PA 1..325 1..326 390 32.8 Plus
Dvir\GJ13756-PA 477 GJ13756-PA 150..475 28..331 324 26.9 Plus
Dvir\GJ13911-PA 355 GJ13911-PA 36..341 28..331 319 32.6 Plus
Dvir\GJ13756-PA 477 GJ13756-PA 11..332 6..321 185 26.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16940-PA 338 GK16940-PA 1..298 38..333 1105 69.5 Plus
Dwil\GK16941-PA 323 GK16941-PA 20..323 28..331 418 34.3 Plus
Dwil\GK13618-PA 345 GK13618-PA 12..345 5..336 392 32.5 Plus
Dwil\GK16942-PA 338 GK16942-PA 14..329 11..326 360 30.2 Plus
Dwil\GK17244-PA 359 GK17244-PA 7..352 2..336 307 27.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19648-PA 358 GE19648-PA 1..358 1..364 1655 89 Plus
Dyak\GE23066-PA 358 GE23066-PA 1..353 1..353 1652 90.9 Plus
Dyak\GE19649-PA 334 GE19649-PA 29..333 28..332 398 34.7 Plus
Dyak\GE22941-PA 446 GE22941-PA 5..334 4..325 319 28.8 Plus
Dyak\GE20161-PA 323 GE20161-PA 1..321 13..331 314 31 Plus