Clone LP20978 Report

Search the DGRC for LP20978

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:209
Well:78
Vector:pOT2
Associated Gene/TranscriptCG17259-RA
Protein status:LP20978.pep: gold
Sequenced Size:1760

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17259 2003-01-01 Sim4 clustering to Release 3
CG17259 2004-10-04 Blastp of sequenced clone
CG17259 2008-04-29 Release 5.5 accounting
CG17259 2008-08-15 Release 5.9 accounting
CG17259 2008-12-18 5.12 accounting

Clone Sequence Records

LP20978.complete Sequence

1760 bp (1760 high quality bases) assembled on 2004-10-04

GenBank Submission: BT016042

> LP20978.complete
CCTAGCCACGTTGTGAAAACGCCGACGAAACGCGAGAGAATCGAAGCTAA
TACGCGACTGAAACTGAAATAAAGGGTAACTAAAATGGTGCTGGATCTGG
ATCTGTTTCGCAGCGACAAGGGGGGCAACCCGGACCTCGTGCGCGAAAAT
CAAAAGAAGCGCTTCAAGGATGTGGCGCTGGTGGAGACTGTGATCGCCAA
GGATACGGAGTGGCGTCAGTGCCGCCACCGTGCCGACAACCTGAACAAGG
TCAAGAACGTCTGCAGCAAGGTGATCGGCGAGAAGATGAAGAAGAAGGAG
CCGGTTGGTGCCATGAGCGAGGACCTGCCCGCAGACGTGACCAAGGACCT
CACAGAGATTGTAGCCGAGACACTGCAGCCGTTGACCGTCAACCAGATCA
AGCAGCTACGCGTTCTCATCGACGACGCAATGACCGAGAACCAGAAGTCG
CTAGAGCTTGCCGAGCAGACGAGGAACACCTCACTGCGGGAGGTGGGCAA
CCACCTGCACGAGTCCGTGCCTGTGTCTAACGACGAGGACGAGAACCGCG
TGGAGCGCACCTTTGGCGACTGCGAAAAGCGCGGCAAGTACTCGCATGTG
GACCTCATCGTGATGATCGACGGCATGAACGCGGAGAAAGGAGCCGTGGT
GTCCGGCGGACGTGGTTACTTTCTTACCGGAGCCGCAGTCTTTTTGGAGC
AGGCTCTTATCCAGCACGCTCTGCACCTGCTGTACGCCCGTGACTACGTT
CCCCTGTACACGCCCTTCTTCATGCGAAAGGAGGTAATGCAGGAGGTGGC
CCAGCTGTCACAGTTCGACGAGGAGCTCTACAAGGTGGTGGGCAAGGGCA
GCGAGAAGGCGGAGGAGGTGGGCATCGATGAGAAGTACCTGATCGCCACC
TCAGAGCAGCCTATCGCCGCCTACCATCGCGATGAATGGCTACCGGAGTC
TTCGCTGCCCATTAAGTATGCTGGTCTGTCCACCTGCTTCCGACAGGAAG
TGGGCTCGCACGGACGCGACACTCGCGGCATTTTCCGCGTCCACCAGTTC
GAGAAGGTGGAGCAGTTCGTACTGACCTCCCCACACGACAACAAGTCGTG
GGAGATGATGGACGAGATGATCGGGAATGCGGAGCAGTTCTGCCAGTCGC
TGGGCATTCCATATCGCGTTGTTAACATCGTTTCCGGTGCCCTCAACCAT
GCTGCCTCCAAGAAGCTGGATCTCGAGGCCTGGTTCGGCGGCAGCGGCGC
TTACAGGGAACTTGTCTCGTGCTCTAACTGCTTGGACTACCAGGCCCGTC
GTCTGCTCGTCCGTTTCGGCCAGACTAAGAAGATGAACGCCGCCGTAGAC
TATGTGCACATGCTGAACGCCACGATGTGCGCAGCCACTCGCGTCATCTG
CGCCATCCTGGAGACCCATCAGACAGAGACGGGCATCAAGGTGCCGGAGC
CATTGAAGAAGTACATGCCGGCGAAGTTCCAGGATGAGATTCCGTTCGTC
AAGCCCGCTCCCATTGATCTGGAGTTGGCCGCCGCCGAGAAGCAGAAAGG
CAAAAAGGAGAAAACCAAGAAGGACCCTGCCGCCGGTTAAGCCTAAAGTT
CACATAATTTACTACGAAATATACTGCTAAACTAAGCTTGCAAAGTCCAC
AAAATTTTTGTTACTTATCGACTTATCTAATATTTATGGCATTTATAGAA
ACTTTATAACGATTAAACTGGATCAAGCTGTGCTTTGAATGCAAAAAAAA
AAAAAAAAAA

LP20978.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17259-RA 1911 CG17259-RA 170..1911 1..1742 8710 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3035141..3036882 1742..1 8710 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:58:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3035491..3037234 1744..1 8720 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3035491..3037234 1744..1 8720 100 Minus
Blast to na_te.dros performed on 2019-03-16 03:02:13 has no hits.

LP20978.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:03:24 Download gff for LP20978.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3035141..3036882 1..1742 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:44:07 Download gff for LP20978.complete
Subject Subject Range Query Range Percent Splice Strand
CG17259-RA 1..1506 85..1590 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:31:01 Download gff for LP20978.complete
Subject Subject Range Query Range Percent Splice Strand
CG17259-RA 1..1506 85..1590 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:41:45 Download gff for LP20978.complete
Subject Subject Range Query Range Percent Splice Strand
CG17259-RA 1..1506 85..1590 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:14:53 Download gff for LP20978.complete
Subject Subject Range Query Range Percent Splice Strand
CG17259-RA 1..1506 85..1590 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:28:38 Download gff for LP20978.complete
Subject Subject Range Query Range Percent Splice Strand
CG17259-RA 1..1506 85..1590 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:35:37 Download gff for LP20978.complete
Subject Subject Range Query Range Percent Splice Strand
CG17259-RA 170..1911 1..1742 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:31:00 Download gff for LP20978.complete
Subject Subject Range Query Range Percent Splice Strand
CG17259-RA 170..1911 1..1742 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:41:45 Download gff for LP20978.complete
Subject Subject Range Query Range Percent Splice Strand
CG17259-RA 170..1911 1..1742 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:14:53 Download gff for LP20978.complete
Subject Subject Range Query Range Percent Splice Strand
CG17259-RA 170..1911 1..1742 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:28:38 Download gff for LP20978.complete
Subject Subject Range Query Range Percent Splice Strand
CG17259-RA 170..1911 1..1742 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:24 Download gff for LP20978.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3035493..3037234 1..1742 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:24 Download gff for LP20978.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3035493..3037234 1..1742 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:24 Download gff for LP20978.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3035493..3037234 1..1742 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:41:45 Download gff for LP20978.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3035493..3037234 1..1742 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:51:45 Download gff for LP20978.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3035493..3037234 1..1742 100   Minus

LP20978.pep Sequence

Translation from 84 to 1589

> LP20978.pep
MVLDLDLFRSDKGGNPDLVRENQKKRFKDVALVETVIAKDTEWRQCRHRA
DNLNKVKNVCSKVIGEKMKKKEPVGAMSEDLPADVTKDLTEIVAETLQPL
TVNQIKQLRVLIDDAMTENQKSLELAEQTRNTSLREVGNHLHESVPVSND
EDENRVERTFGDCEKRGKYSHVDLIVMIDGMNAEKGAVVSGGRGYFLTGA
AVFLEQALIQHALHLLYARDYVPLYTPFFMRKEVMQEVAQLSQFDEELYK
VVGKGSEKAEEVGIDEKYLIATSEQPIAAYHRDEWLPESSLPIKYAGLST
CFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDNKSWEMMDEMIGNAE
QFCQSLGIPYRVVNIVSGALNHAASKKLDLEAWFGGSGAYRELVSCSNCL
DYQARRLLVRFGQTKKMNAAVDYVHMLNATMCAATRVICAILETHQTETG
IKVPEPLKKYMPAKFQDEIPFVKPAPIDLELAAAEKQKGKKEKTKKDPAA
G*

LP20978.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15510-PA 501 GF15510-PA 1..501 1..501 2527 94.4 Plus
Dana\GF22996-PA 419 GF22996-PA 141..396 190..461 354 30 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24463-PA 501 GG24463-PA 1..501 1..501 2681 99 Plus
Dere\GG16916-PA 416 GG16916-PA 138..393 190..461 370 32.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10337-PA 504 GH10337-PA 1..488 1..488 2430 91.8 Plus
Dgri\GH24998-PA 160 GH24998-PA 1..144 345..488 748 94.4 Plus
Dgri\GH19144-PA 436 GH19144-PA 114..412 136..461 361 27.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
SerRS-PB 501 CG17259-PB 1..501 1..501 2594 100 Plus
SerRS-PA 501 CG17259-PA 1..501 1..501 2594 100 Plus
SerRS-m-PB 417 CG4938-PB 16..394 53..461 372 26.8 Plus
SerRS-m-PA 417 CG4938-PA 16..394 53..461 372 26.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17096-PA 501 GI17096-PA 1..501 1..501 2480 92.8 Plus
Dmoj\GI10857-PA 407 GI10857-PA 14..380 78..461 398 28.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19573-PA 501 GL19573-PA 1..501 1..501 2559 96.2 Plus
Dper\GL23244-PA 418 GL23244-PA 139..394 190..461 382 32.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14420-PA 501 GA14420-PA 1..501 1..501 2559 96.2 Plus
Dpse\GA18540-PA 418 GA18540-PA 139..394 190..461 382 32.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18172-PA 501 GM18172-PA 1..501 1..501 2691 99.4 Plus
Dsec\GM24223-PA 417 GM24223-PA 139..394 190..461 377 31.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22783-PA 175 GD22783-PA 1..164 1..164 867 100 Plus
Dsim\GD22784-PA 85 GD22784-PA 1..85 417..501 449 100 Plus
Dsim\GD19014-PA 417 GD19014-PA 139..394 190..461 368 32.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10873-PA 501 GJ10873-PA 1..501 1..501 2499 93.2 Plus
Dvir\GJ14464-PA 427 GJ14464-PA 39..403 80..461 402 27.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14956-PA 502 GK14956-PA 1..484 1..484 2483 93.2 Plus
Dwil\GK11136-PA 420 GK11136-PA 140..395 190..461 364 31.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14950-PA 501 GE14950-PA 1..501 1..501 2700 99.8 Plus
Dyak\GE24299-PA 417 GE24299-PA 139..394 190..461 370 32.8 Plus

LP20978.hyp Sequence

Translation from 84 to 1589

> LP20978.hyp
MVLDLDLFRSDKGGNPDLVRENQKKRFKDVALVETVIAKDTEWRQCRHRA
DNLNKVKNVCSKVIGEKMKKKEPVGAMSEDLPADVTKDLTEIVAETLQPL
TVNQIKQLRVLIDDAMTENQKSLELAEQTRNTSLREVGNHLHESVPVSND
EDENRVERTFGDCEKRGKYSHVDLIVMIDGMNAEKGAVVSGGRGYFLTGA
AVFLEQALIQHALHLLYARDYVPLYTPFFMRKEVMQEVAQLSQFDEELYK
VVGKGSEKAEEVGIDEKYLIATSEQPIAAYHRDEWLPESSLPIKYAGLST
CFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDNKSWEMMDEMIGNAE
QFCQSLGIPYRVVNIVSGALNHAASKKLDLEAWFGGSGAYRELVSCSNCL
DYQARRLLVRFGQTKKMNAAVDYVHMLNATMCAATRVICAILETHQTETG
IKVPEPLKKYMPAKFQDEIPFVKPAPIDLELAAAEKQKGKKEKTKKDPAA
G*

LP20978.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17259-PB 501 CG17259-PB 1..501 1..501 2594 100 Plus
CG17259-PA 501 CG17259-PA 1..501 1..501 2594 100 Plus
Aats-ser-PB 417 CG4938-PB 16..394 53..461 372 26.8 Plus
Aats-ser-PA 417 CG4938-PA 16..394 53..461 372 26.8 Plus