Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LP21102.complete Sequence
1036 bp (1036 high quality bases) assembled on 2005-10-06
GenBank Submission: BT023893
> LP21102.complete
AGCCAATCCAATCCTAAGGTCAAGACCAGTTCCGCAGGAAATACCAAGGA
AAACCACAAAATGAAGATCTTCTACGGAGCTCTGCTGGTGCTGGGCACAG
CAATTATTGCCCAGGCGGCTGTTGCCCGTTCCAACGACGAGTCCGCCCAG
GATACCGCCCAACAGTCCAAGTACCGCCTGTTCAAGCAGCCAGTGCAGAT
CGAGGCACGCAGCTTACAGCAGCTTATGTCCCTGAAGAACCCACCTTGTC
CTCCGGCAGCCACCACAACAACATCTGTGCCCACCACAACCACAGTGACG
ACCTCACCCACTGGGCCCACTACCACAACTGGAACGTCCACAACAACCAC
CACACCCACGACAACTTCCACAAACCCTACCACCACCGCTCGTCGCTCAT
TCAACCAGAACAATTTGGTCGACGGAAACGAGGACGACGACGATGAGGAG
TTTGACCAGGATGTGGAGGAAGAGAAGTATCTGAAGGACGAGGATGAAGT
GCAGGAGGACGACCAAGATGATGACGATAACGAGGACGACGGCTTCCAGC
TTGTGGCTCCCAAAGCCTCTGCATCCTCATCCTCTTCTATTCGCCGTCGC
AACAGCGCTAGCAGCTCCTACGGATCGTCCGGCAACAAGAATCTGTCCAA
CAGCGAATTGATGCGCGAAATCGAACTGCGCCGGCAGAAGGAACTCAACG
AGCAGCTGCGCAAGCAGCTTGCCAGCTCCCGTCGCCGTTCCAACCAGAGC
CGCCGTCGTGCCCTAAACAAACGCCGTCGTGCCCTTCGCCGCCAGCAGCA
GAAGCGCCGCCGCCTGTCCCGTCGCCAGCAGCAGAAGCGTCGCTCCCAGA
ACCGCCGTCATCGCAACGCCCGCCGCCGTCAGCGACGCAACAATCGCCTG
AGCCGCCTCCGTCAGCGCCGTCGCGCCAACCGTCGCCGCAACTGAGCGAC
CAGTGACCAGCAATGACCTCTGAACCACGACATGTACGATTGAAATAAAG
CGAATATATATAGAAAACAAAAAAAAAAAAAAAAAA
LP21102.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:27:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14422-RA | 1069 | CG14422-RA | 47..1069 | 1..1023 | 5115 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 2837465..2838362 | 121..1018 | 4475 | 99.9 | Plus |
chrX | 22417052 | chrX | 2837209..2837329 | 1..121 | 605 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:58:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2943672..2944574 | 121..1023 | 4515 | 100 | Plus |
X | 23542271 | X | 2943416..2943536 | 1..121 | 605 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:18:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 2951770..2952672 | 121..1023 | 4515 | 100 | Plus |
X | 23527363 | X | 2951514..2951634 | 1..121 | 605 | 100 | Plus |
Blast to na_te.dros performed 2019-03-16 18:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2549 | 257..370 | 111 | 55.3 | Plus |
LP21102.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:38:55 Download gff for
LP21102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 2837209..2837329 | 1..121 | 100 | -> | Plus |
chrX | 2837466..2837624 | 122..280 | 100 | == | Plus |
chrX | 2837734..2837773 | 390..429 | 100 | == | Plus |
chrX | 2837884..2838115 | 540..771 | 100 | == | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:44:10 Download gff for
LP21102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 1..885 | 61..945 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:49:26 Download gff for
LP21102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 1..885 | 61..945 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:15:02 Download gff for
LP21102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 1..885 | 61..945 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:30:17 Download gff for
LP21102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 1..885 | 61..945 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:33 Download gff for
LP21102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 1..885 | 61..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:22:36 Download gff for
LP21102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 1..885 | 61..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:49:26 Download gff for
LP21102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 16..1033 | 1..1018 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:15:02 Download gff for
LP21102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 31..1048 | 1..1018 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:30:17 Download gff for
LP21102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 1..885 | 61..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:33 Download gff for
LP21102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 31..1048 | 1..1018 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:38:55 Download gff for
LP21102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2943416..2943536 | 1..121 | 100 | -> | Plus |
X | 2943673..2944569 | 122..1018 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:38:55 Download gff for
LP21102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2943416..2943536 | 1..121 | 100 | -> | Plus |
X | 2943673..2944569 | 122..1018 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:38:55 Download gff for
LP21102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2943416..2943536 | 1..121 | 100 | -> | Plus |
X | 2943673..2944569 | 122..1018 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:02 Download gff for
LP21102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2837449..2837569 | 1..121 | 100 | -> | Plus |
arm_X | 2837706..2838602 | 122..1018 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:08:41 Download gff for
LP21102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2951771..2952667 | 122..1018 | 100 | | Plus |
X | 2951514..2951634 | 1..121 | 100 | -> | Plus |
LP21102.hyp Sequence
Translation from 0 to 944
> LP21102.hyp
SQSNPKVKTSSAGNTKENHKMKIFYGALLVLGTAIIAQAAVARSNDESAQ
DTAQQSKYRLFKQPVQIEARSLQQLMSLKNPPCPPAATTTTSVPTTTTVT
TSPTGPTTTTGTSTTTTTPTTTSTNPTTTARRSFNQNNLVDGNEDDDDEE
FDQDVEEEKYLKDEDEVQEDDQDDDDNEDDGFQLVAPKASASSSSSIRRR
NSASSSYGSSGNKNLSNSELMREIELRRQKELNEQLRKQLASSRRRSNQS
RRRALNKRRRALRRQQQKRRRLSRRQQQKRRSQNRRHRNARRRQRRNNRL
SRLRQRRRANRRRN*
LP21102.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14422-PA | 294 | CG14422-PA | 1..294 | 21..314 | 1472 | 100 | Plus |
CG14420-PA | 293 | CG14420-PA | 4..293 | 28..314 | 338 | 33.7 | Plus |
CG14421-PA | 238 | CG14421-PA | 61..232 | 86..313 | 324 | 40.2 | Plus |
CG14423-PA | 305 | CG14423-PA | 36..301 | 34..311 | 174 | 25.8 | Plus |
CG2839-PA | 826 | CG2839-PA | 483..658 | 144..313 | 165 | 23.3 | Plus |
LP21102.pep Sequence
Translation from 60 to 944
> LP21102.pep
MKIFYGALLVLGTAIIAQAAVARSNDESAQDTAQQSKYRLFKQPVQIEAR
SLQQLMSLKNPPCPPAATTTTSVPTTTTVTTSPTGPTTTTGTSTTTTTPT
TTSTNPTTTARRSFNQNNLVDGNEDDDDEEFDQDVEEEKYLKDEDEVQED
DQDDDDNEDDGFQLVAPKASASSSSSIRRRNSASSSYGSSGNKNLSNSEL
MREIELRRQKELNEQLRKQLASSRRRSNQSRRRALNKRRRALRRQQQKRR
RLSRRQQQKRRSQNRRHRNARRRQRRNNRLSRLRQRRRANRRRN*
LP21102.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:48:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG18639-PA | 285 | GG18639-PA | 1..259 | 1..268 | 492 | 69.9 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14422-PA | 294 | CG14422-PA | 1..294 | 1..294 | 1472 | 100 | Plus |
CG14420-PA | 293 | CG14420-PA | 4..293 | 8..294 | 338 | 33.7 | Plus |
CG14421-PA | 238 | CG14421-PA | 61..232 | 66..293 | 324 | 40.2 | Plus |
CG14423-PA | 305 | CG14423-PA | 36..301 | 14..291 | 174 | 25.8 | Plus |
CG2839-PA | 826 | CG2839-PA | 483..658 | 124..293 | 165 | 23.3 | Plus |
CG2839-PA | 826 | CG2839-PA | 444..628 | 110..293 | 159 | 25.5 | Plus |
CG14418-PB | 284 | CG14418-PB | 112..269 | 125..294 | 159 | 26 | Plus |
CG14418-PA | 327 | CG14418-PA | 155..312 | 125..294 | 159 | 26 | Plus |
CG3546-PA | 630 | CG3546-PA | 349..545 | 126..288 | 158 | 27.6 | Plus |
CG34220-PA | 726 | CG34220-PA | 51..100 | 61..109 | 157 | 68 | Plus |
CG2839-PA | 826 | CG2839-PA | 477..634 | 129..293 | 156 | 25.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 409..568 | 126..293 | 155 | 21.9 | Plus |
CG34220-PA | 726 | CG34220-PA | 275..323 | 61..109 | 153 | 63.3 | Plus |
CG14418-PB | 284 | CG14418-PB | 107..266 | 116..292 | 151 | 23.5 | Plus |
CG14418-PA | 327 | CG14418-PA | 150..309 | 116..292 | 151 | 23.5 | Plus |
CG43798-PA | 213 | CG43798-PA | 134..206 | 68..135 | 146 | 47.9 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:49:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM19259-PA | 296 | GM19259-PA | 1..223 | 1..221 | 416 | 77.2 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:49:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE16289-PA | 288 | GE16289-PA | 1..258 | 1..264 | 402 | 66.7 | Plus |