Clone LP21102 Report

Search the DGRC for LP21102

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:211
Well:2
Vector:pOT2
Associated Gene/TranscriptCG14422-RA
Protein status:LP21102.pep: gold
Sequenced Size:1036

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14422 2008-04-29 Release 5.5 accounting
CG14422 2008-08-15 Release 5.9 accounting
CG14422 2008-12-18 5.12 accounting

Clone Sequence Records

LP21102.complete Sequence

1036 bp (1036 high quality bases) assembled on 2005-10-06

GenBank Submission: BT023893

> LP21102.complete
AGCCAATCCAATCCTAAGGTCAAGACCAGTTCCGCAGGAAATACCAAGGA
AAACCACAAAATGAAGATCTTCTACGGAGCTCTGCTGGTGCTGGGCACAG
CAATTATTGCCCAGGCGGCTGTTGCCCGTTCCAACGACGAGTCCGCCCAG
GATACCGCCCAACAGTCCAAGTACCGCCTGTTCAAGCAGCCAGTGCAGAT
CGAGGCACGCAGCTTACAGCAGCTTATGTCCCTGAAGAACCCACCTTGTC
CTCCGGCAGCCACCACAACAACATCTGTGCCCACCACAACCACAGTGACG
ACCTCACCCACTGGGCCCACTACCACAACTGGAACGTCCACAACAACCAC
CACACCCACGACAACTTCCACAAACCCTACCACCACCGCTCGTCGCTCAT
TCAACCAGAACAATTTGGTCGACGGAAACGAGGACGACGACGATGAGGAG
TTTGACCAGGATGTGGAGGAAGAGAAGTATCTGAAGGACGAGGATGAAGT
GCAGGAGGACGACCAAGATGATGACGATAACGAGGACGACGGCTTCCAGC
TTGTGGCTCCCAAAGCCTCTGCATCCTCATCCTCTTCTATTCGCCGTCGC
AACAGCGCTAGCAGCTCCTACGGATCGTCCGGCAACAAGAATCTGTCCAA
CAGCGAATTGATGCGCGAAATCGAACTGCGCCGGCAGAAGGAACTCAACG
AGCAGCTGCGCAAGCAGCTTGCCAGCTCCCGTCGCCGTTCCAACCAGAGC
CGCCGTCGTGCCCTAAACAAACGCCGTCGTGCCCTTCGCCGCCAGCAGCA
GAAGCGCCGCCGCCTGTCCCGTCGCCAGCAGCAGAAGCGTCGCTCCCAGA
ACCGCCGTCATCGCAACGCCCGCCGCCGTCAGCGACGCAACAATCGCCTG
AGCCGCCTCCGTCAGCGCCGTCGCGCCAACCGTCGCCGCAACTGAGCGAC
CAGTGACCAGCAATGACCTCTGAACCACGACATGTACGATTGAAATAAAG
CGAATATATATAGAAAACAAAAAAAAAAAAAAAAAA

LP21102.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14422-RA 1069 CG14422-RA 47..1069 1..1023 5115 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2837465..2838362 121..1018 4475 99.9 Plus
chrX 22417052 chrX 2837209..2837329 1..121 605 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:58:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2943672..2944574 121..1023 4515 100 Plus
X 23542271 X 2943416..2943536 1..121 605 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2951770..2952672 121..1023 4515 100 Plus
X 23527363 X 2951514..2951634 1..121 605 100 Plus
Blast to na_te.dros performed 2019-03-16 18:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2436..2549 257..370 111 55.3 Plus

LP21102.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:38:55 Download gff for LP21102.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2837209..2837329 1..121 100 -> Plus
chrX 2837466..2837624 122..280 100 == Plus
chrX 2837734..2837773 390..429 100 == Plus
chrX 2837884..2838115 540..771 100 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:44:10 Download gff for LP21102.complete
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 1..885 61..945 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:49:26 Download gff for LP21102.complete
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 1..885 61..945 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:15:02 Download gff for LP21102.complete
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 1..885 61..945 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:30:17 Download gff for LP21102.complete
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 1..885 61..945 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:33 Download gff for LP21102.complete
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 1..885 61..945 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:22:36 Download gff for LP21102.complete
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 1..885 61..945 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:49:26 Download gff for LP21102.complete
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 16..1033 1..1018 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:15:02 Download gff for LP21102.complete
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 31..1048 1..1018 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:30:17 Download gff for LP21102.complete
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 1..885 61..945 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:33 Download gff for LP21102.complete
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 31..1048 1..1018 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:38:55 Download gff for LP21102.complete
Subject Subject Range Query Range Percent Splice Strand
X 2943416..2943536 1..121 100 -> Plus
X 2943673..2944569 122..1018 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:38:55 Download gff for LP21102.complete
Subject Subject Range Query Range Percent Splice Strand
X 2943416..2943536 1..121 100 -> Plus
X 2943673..2944569 122..1018 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:38:55 Download gff for LP21102.complete
Subject Subject Range Query Range Percent Splice Strand
X 2943416..2943536 1..121 100 -> Plus
X 2943673..2944569 122..1018 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:02 Download gff for LP21102.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2837449..2837569 1..121 100 -> Plus
arm_X 2837706..2838602 122..1018 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:08:41 Download gff for LP21102.complete
Subject Subject Range Query Range Percent Splice Strand
X 2951771..2952667 122..1018 100   Plus
X 2951514..2951634 1..121 100 -> Plus

LP21102.hyp Sequence

Translation from 0 to 944

> LP21102.hyp
SQSNPKVKTSSAGNTKENHKMKIFYGALLVLGTAIIAQAAVARSNDESAQ
DTAQQSKYRLFKQPVQIEARSLQQLMSLKNPPCPPAATTTTSVPTTTTVT
TSPTGPTTTTGTSTTTTTPTTTSTNPTTTARRSFNQNNLVDGNEDDDDEE
FDQDVEEEKYLKDEDEVQEDDQDDDDNEDDGFQLVAPKASASSSSSIRRR
NSASSSYGSSGNKNLSNSELMREIELRRQKELNEQLRKQLASSRRRSNQS
RRRALNKRRRALRRQQQKRRRLSRRQQQKRRSQNRRHRNARRRQRRNNRL
SRLRQRRRANRRRN*

LP21102.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG14422-PA 294 CG14422-PA 1..294 21..314 1472 100 Plus
CG14420-PA 293 CG14420-PA 4..293 28..314 338 33.7 Plus
CG14421-PA 238 CG14421-PA 61..232 86..313 324 40.2 Plus
CG14423-PA 305 CG14423-PA 36..301 34..311 174 25.8 Plus
CG2839-PA 826 CG2839-PA 483..658 144..313 165 23.3 Plus

LP21102.pep Sequence

Translation from 60 to 944

> LP21102.pep
MKIFYGALLVLGTAIIAQAAVARSNDESAQDTAQQSKYRLFKQPVQIEAR
SLQQLMSLKNPPCPPAATTTTSVPTTTTVTTSPTGPTTTTGTSTTTTTPT
TTSTNPTTTARRSFNQNNLVDGNEDDDDEEFDQDVEEEKYLKDEDEVQED
DQDDDDNEDDGFQLVAPKASASSSSSIRRRNSASSSYGSSGNKNLSNSEL
MREIELRRQKELNEQLRKQLASSRRRSNQSRRRALNKRRRALRRQQQKRR
RLSRRQQQKRRSQNRRHRNARRRQRRNNRLSRLRQRRRANRRRN*

LP21102.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18639-PA 285 GG18639-PA 1..259 1..268 492 69.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14422-PA 294 CG14422-PA 1..294 1..294 1472 100 Plus
CG14420-PA 293 CG14420-PA 4..293 8..294 338 33.7 Plus
CG14421-PA 238 CG14421-PA 61..232 66..293 324 40.2 Plus
CG14423-PA 305 CG14423-PA 36..301 14..291 174 25.8 Plus
CG2839-PA 826 CG2839-PA 483..658 124..293 165 23.3 Plus
CG2839-PA 826 CG2839-PA 444..628 110..293 159 25.5 Plus
CG14418-PB 284 CG14418-PB 112..269 125..294 159 26 Plus
CG14418-PA 327 CG14418-PA 155..312 125..294 159 26 Plus
CG3546-PA 630 CG3546-PA 349..545 126..288 158 27.6 Plus
CG34220-PA 726 CG34220-PA 51..100 61..109 157 68 Plus
CG2839-PA 826 CG2839-PA 477..634 129..293 156 25.5 Plus
CG2839-PA 826 CG2839-PA 409..568 126..293 155 21.9 Plus
CG34220-PA 726 CG34220-PA 275..323 61..109 153 63.3 Plus
CG14418-PB 284 CG14418-PB 107..266 116..292 151 23.5 Plus
CG14418-PA 327 CG14418-PA 150..309 116..292 151 23.5 Plus
CG43798-PA 213 CG43798-PA 134..206 68..135 146 47.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19259-PA 296 GM19259-PA 1..223 1..221 416 77.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16289-PA 288 GE16289-PA 1..258 1..264 402 66.7 Plus