Clone LP21420 Report

Search the DGRC for LP21420

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:214
Well:20
Vector:pOT2
Associated Gene/TranscriptCG14767-RB
Protein status:LP21420.pep: gold
Sequenced Size:2031

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14767-RB 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

LP21420.complete Sequence

2031 bp assembled on 2011-03-14

GenBank Submission: BT126165.1

> LP21420.complete
ATTTTCCACAGCCGCAGTTTCGTGGGGCGTGCAATGTTTAGGATCCACCT
CAAGATGGGTCCCCAACGCAACCAGCTCCACAGCAACAACAACAATGGTG
CCGCCGGAAGTAGCAGCAGCACCGGAAACCGTCACCTGAAGGAGTTCACC
TGCTGCTTCGGCCTGCATGTCCACACGGCCACTTTGATGATCGGATTGTG
GCACCTGTTCTTGAACATATTGGCGCTAAGCGTTCTAGCGGTCATATGGC
GCAATCCGGAGATGATGGACGAACTGGAAGGTGGCACCCACGACTACACC
GTGGATCTGAGTGCACCGGCCCTACCCACGCCCCTTAGCAAGGTCGAACC
GCCCTACGCCTACCGTGACCACTCCCTCAACTATCGTAAGCGTTACCAGA
ACTTCGATATGGGCGGACTGGTGTGCACCTGCATGATAGCCATTACACTG
ATGATGATCTACGGAACCATCAAGGGAAAACCCTCCCACCTGTTGCCGTT
CTTCTGTTTGCAATTGTTTGATTTCGCTATTACAACTCTCACCGCCGCTG
GATATCTGTGCTACCTGCAGGCCATTCACAGCATCATTGCCGAGTCGCAT
CGCTTGCCGTGGCGCGAGAAGCTGCTAGAACTACCACCTGAGGAGCTAGT
TGTTGTTGTCCTGGTCGTATTCATCTGCATTGTGTTTCTAAAGGCCTATT
GCATTGGTATCGTTTGGCGCTGCTACAAGTACTTGACGCTCCGTCAGCAA
CACGTTCGCACCCTGTTCCCCTTCCTGGAGCCACCGACTGGAGTCCACAG
TGTTGGCGGAACCTTTGGTGCCGAAGAGCGGTCTTACTCCACTCTGTTGC
CCAATTACGATGAAGCGATTGCCCAGTACTTGAAGCAGGCACCACCGCCA
TCTTATCAGGTGGCCATGTCAAACTACGAAGAGGGTGAAGACGCAGCTGT
TGGAGGTGCGGAGGTTAATCCTTCGGTGGCCCCTCTCTTCGTGGCCCTTG
GAGCAGCCACTACCGCGAACGTAGCCTCCAACACGGATGACAACATGGAT
AATAACAATGATCAGCCGAACAATAACAACACTATGCATGTCAATGCCAA
TACGCCACCAATGCGCCGCAGCGATGCAGCTGTAAACGCTAATGTCGACG
AGGAAGCGGACGATTTGGAGGTTATTGACGCTGGCGTTGATGTAATCGGT
GGCATTCCGCCTCCTCCGCCCTACAACGACGTTGCCGATGCCCAGGTGCA
AGTGCCATCGCAATCGCCGCTGCATCGCCAGCCAAACATCCCGGGACAAG
TATTCGGCGGACGCGACGAAAGCCAGGCTTAAACAGTACTTTCGACTGGA
TTGCTTCTCATGGCGAGTGGGTTGTGATCAGCGGTGACCACCCCTCTCCC
ATCCTCTTCTTGCCCAGATGATCTGGTTTCTGGTCCCTCATTTCGCAGCT
ATCATTCCCAGGCACACATACACCTTCTTAATGGTTGCTTCAATGTATTG
AACACTGTTTTTAGAAAAACGAAACGCAAACAAGTTTTCGCTATTAGCCA
TCGCTCATTATTGTTGTTTAACGTACAACTAAGACGCTCTAGTTGCTGCT
AATTTAGTAAACAAAAGCATTAAAGCCAAAAACATATTGTGATGCTGGCG
AGGAAAGCATCAATTCCTTTTCGGCCGCATCTGACCCGATTTTAGCTGCA
ACAATCTGTTAGAACGTTTTTCATTTGGCCCGAACTAGCCTGAGAAGTTC
GGATATTGTAGGCCCAAGTAGTTGTTACCAGAGAGTGTCGCTGGCATTGT
AGACACCTTTACGATGTTCTTTGTTTTAAGTTATCTCGTAAGACTATGCA
TATTGAATACCGTGTACTGAATTCAGAGCACAGGCAGTCATAATCCATTA
ATTATGATGATATTACCAGCAACAGTAAAGTTTTATGTGTGTACAATATC
TAAATGTATACTGTGTACTAAATATGCAAAGATATTCGAATAAAAATTAG
TTTATATTTAAAAAAAAAAAAAAAAAAAAAA

LP21420.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4605596..4607068 2009..537 7350 99.9 Minus
chr2R 21145070 chr2R 4610836..4611042 207..1 1035 100 Minus
chr2R 21145070 chr2R 4607422..4607612 397..207 955 100 Minus
chr2R 21145070 chr2R 4607225..4607363 536..398 695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8718015..8719489 2011..537 7375 100 Minus
2R 25286936 2R 8723257..8723463 207..1 1035 100 Minus
2R 25286936 2R 8719843..8720033 397..207 955 100 Minus
2R 25286936 2R 8719646..8719784 536..398 695 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8719214..8720688 2011..537 7375 100 Minus
2R 25260384 2R 8724456..8724662 207..1 1035 100 Minus
2R 25260384 2R 8721042..8721232 397..207 955 100 Minus
2R 25260384 2R 8720845..8720983 536..398 695 100 Minus
Blast to na_te.dros performed 2019-03-16 22:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2388 61..135 127 65.3 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 136..196 60..119 122 68.9 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9166..9226 60..119 122 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6818..6914 64..156 114 61.9 Plus

LP21420.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:32:26 Download gff for LP21420.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4605596..4607068 537..2009 99 <- Minus
chr2R 4607225..4607363 398..536 100 <- Minus
chr2R 4607422..4607611 208..397 100 <- Minus
chr2R 4610836..4611042 1..207 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-22 17:53:10 Download gff for LP21420.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RB 1..1299 34..1332 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:57:16 Download gff for LP21420.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RC 1..1299 34..1332 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:29:30 Download gff for LP21420.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RC 1..1299 34..1332 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-22 17:53:09 Download gff for LP21420.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RB 168..2176 1..2009 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:57:16 Download gff for LP21420.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RB 35..2043 1..2009 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:30 Download gff for LP21420.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RB 35..2043 1..2009 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:26 Download gff for LP21420.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8719843..8720032 208..397 100 <- Minus
2R 8723257..8723463 1..207 100   Minus
2R 8718017..8719489 537..2009 100 <- Minus
2R 8719646..8719784 398..536 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:26 Download gff for LP21420.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8719843..8720032 208..397 100 <- Minus
2R 8723257..8723463 1..207 100   Minus
2R 8718017..8719489 537..2009 100 <- Minus
2R 8719646..8719784 398..536 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:26 Download gff for LP21420.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8719843..8720032 208..397 100 <- Minus
2R 8723257..8723463 1..207 100   Minus
2R 8718017..8719489 537..2009 100 <- Minus
2R 8719646..8719784 398..536 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:57:16 Download gff for LP21420.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4607151..4607289 398..536 100 <- Minus
arm_2R 4607348..4607537 208..397 100 <- Minus
arm_2R 4610762..4610968 1..207 100   Minus
arm_2R 4605522..4606994 537..2009 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:01:39 Download gff for LP21420.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8719216..8720688 537..2009 100 <- Minus
2R 8720845..8720983 398..536 100 <- Minus
2R 8721042..8721231 208..397 100 <- Minus
2R 8724456..8724662 1..207 100   Minus

LP21420.pep Sequence

Translation from 0 to 1331

> LP21420.pep
IFHSRSFVGRAMFRIHLKMGPQRNQLHSNNNNGAAGSSSSTGNRHLKEFT
CCFGLHVHTATLMIGLWHLFLNILALSVLAVIWRNPEMMDELEGGTHDYT
VDLSAPALPTPLSKVEPPYAYRDHSLNYRKRYQNFDMGGLVCTCMIAITL
MMIYGTIKGKPSHLLPFFCLQLFDFAITTLTAAGYLCYLQAIHSIIAESH
RLPWREKLLELPPEELVVVVLVVFICIVFLKAYCIGIVWRCYKYLTLRQQ
HVRTLFPFLEPPTGVHSVGGTFGAEERSYSTLLPNYDEAIAQYLKQAPPP
SYQVAMSNYEEGEDAAVGGAEVNPSVAPLFVALGAATTANVASNTDDNMD
NNNDQPNNNNTMHVNANTPPMRRSDAAVNANVDEEADDLEVIDAGVDVIG
GIPPPPPYNDVADAQVQVPSQSPLHRQPNIPGQVFGGRDESQA*

LP21420.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12567-PA 929 GF12567-PA 552..929 70..443 1535 87.6 Plus
Dana\GF12567-PA 929 GF12567-PA 1..56 19..69 183 64.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10620-PA 844 GG10620-PA 471..844 70..443 1971 97.6 Plus
Dere\GG10620-PA 844 GG10620-PA 1..56 12..69 303 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21353-PA 457 GH21353-PA 1..457 12..443 1368 69.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14767-PB 432 CG14767-PB 1..432 12..443 2301 100 Plus
CG14767-PC 432 CG14767-PC 1..432 12..443 2301 100 Plus
CG14767-PA 428 CG14767-PA 1..428 12..443 2264 99.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20769-PA 448 GI20769-PA 1..448 12..443 1383 72.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17362-PA 429 GL17362-PA 1..429 12..443 1636 81.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15783-PB 429 GA15783-PB 1..429 12..443 1648 81.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20666-PA 432 GM20666-PA 1..432 12..443 2319 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10140-PA 432 GD10140-PA 1..432 12..443 2324 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20504-PA 432 GJ20504-PA 1..432 12..443 1448 73.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21566-PA 757 GK21566-PA 368..757 70..443 1264 75.9 Plus
Dwil\GK21566-PA 757 GK21566-PA 1..68 12..69 156 60.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22796-PA 828 GE22796-PA 455..828 70..443 1994 98.7 Plus
Dyak\GE22796-PA 828 GE22796-PA 1..58 12..69 324 98.3 Plus

LP21420.hyp Sequence

Translation from 0 to 1331

> LP21420.hyp
IFHSRSFVGRAMFRIHLKMGPQRNQLHSNNNNGAAGSSSSTGNRHLKEFT
CCFGLHVHTATLMIGLWHLFLNILALSVLAVIWRNPEMMDELEGGTHDYT
VDLSAPALPTPLSKVEPPYAYRDHSLNYRKRYQNFDMGGLVCTCMIAITL
MMIYGTIKGKPSHLLPFFCLQLFDFAITTLTAAGYLCYLQAIHSIIAESH
RLPWREKLLELPPEELVVVVLVVFICIVFLKAYCIGIVWRCYKYLTLRQQ
HVRTLFPFLEPPTGVHSVGGTFGAEERSYSTLLPNYDEAIAQYLKQAPPP
SYQVAMSNYEEGEDAAVGGAEVNPSVAPLFVALGAATTANVASNTDDNMD
NNNDQPNNNNTMHVNANTPPMRRSDAAVNANVDEEADDLEVIDAGVDVIG
GIPPPPPYNDVADAQVQVPSQSPLHRQPNIPGQVFGGRDESQA*

LP21420.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14767-PB 432 CG14767-PB 1..432 12..443 2301 100 Plus
CG14767-PC 432 CG14767-PC 1..432 12..443 2301 100 Plus
CG14767-PA 428 CG14767-PA 1..428 12..443 2264 99.1 Plus