Clone LP21446 Report

Search the DGRC for LP21446

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:214
Well:46
Vector:pOT2
Associated Gene/TranscriptCG18563-RB
Protein status:LP21446.pep: gold
Sequenced Size:1252

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18563 2003-01-01 Sim4 clustering to Release 3
CG18563 2008-04-29 Release 5.5 accounting

Clone Sequence Records

LP21446.complete Sequence

1252 bp (1252 high quality bases) assembled on 2005-08-04

GenBank Submission: BT023816

> LP21446.complete
ATGGGATCGATCGTGGCCACAGCAGCTATTCTTTTATTCTGCGTCCTTTC
GGGCGAAGCCTGTAGGTATTGTGTCCCTATGGAGAAGTGCTTAATACTAA
GTCGAAAACTAAATAGTTGCCCATTTAATCACGTCTGTTGTGACATTATC
ATAAAGAGTCCTTATATCCCTAGCGGACCGAATGAGGAATCCGATTCTGA
GTCTGCATCATCTTCTACAGAAGAGGAAAACATACCAACCTTTATCTATT
TTCCAACGAGACCAACAGTCTCAAGTGAGCCCCAAAACAATGTTTCTACG
GAACCTGATGTACCCATTACTTATTGGCCACTTAAAGGATCGGGCGCCCC
AACAAATGATGGTGCGCAAGCTGAGCAACCAAAGCCAACTGAACGGACAC
AGCCAGGAGGCAGGTGCAATACGACTGGTCTATATTCCTGGGTGGTAGCC
CTATTTTACGAAGAAGTTTACTTGACCGGCGGCTCACTAATTAGTCCAAA
AGTGATCCTAACGGCAGCCCACAACACAATGAACAAAATGAATGAAGATA
GAATTGTGGTTAGGGCCGGCGAGTTTGTCATGAACACAACAAATGAACCC
ATTCAGTATGAGGAGCGCGTTGTTGAAAGGATTGTGAGACATGAAGGATT
CATTTTTCAGTCGGGTATTAATAATGTGGCTCTTATTTTCGTAAAAACAC
CGTTCGTGCTAAACGATCGCATTGGAGTATTGACGTTGCCAAGCCGACAA
GCGTCGTTCGAGGGACGTCGCTGTACGGTTGCCGGTTGGGACTTGGTGAG
TTCCCATGATCAAAGCCGTATGAGAATTATAAAGAAATTAGAGTTAACCG
TGTTGGACAGAACGACATGCGTGGCTCAGTTTAGAAATACAACTTTGGGC
AGGAATTTTGATCTTCATCCGAGTCTGATTTGCGCCCGAAGTGAAATAAA
CCGGGATTTCTGCTTTGGCGGTGGAGGTTATGCATTGTTCTGCTCCCTCG
GAGATGAGAATCCACACGTCTTCGAGCAGGCTGGGATCGTCGCCTGGGGC
ATGGGGTGTGGATTGGACCTCCCGGGAATCTACACCAATGTGGCAATGTT
CAGAAGTTGGATTTATAATAGGATAGCATACTTTGGCTAACGCTTAAAGA
TTATTACATCAATTCTTCATTAAGATTGTGATTATGCATTATTGTATAAA
TATACAAAATAAATGAATTTTTAATCAAAATCAAAAAAAAAAAAAAAAAA
AA

LP21446.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG18563-RB 1373 CG18563-RB 142..1373 1..1232 6160 100 Plus
CG18563.a 1167 CG18563.a 1..795 1..795 3975 100 Plus
CG18563.a 1167 CG18563.a 795..1167 860..1232 1865 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 17455305..17456329 1232..208 5110 99.9 Minus
chr2L 23010047 chr2L 17456505..17456660 156..1 750 98.7 Minus
chr2L 23010047 chr2L 17456391..17456443 207..155 265 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:59:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17456667..17457694 1235..208 5140 100 Minus
2L 23513712 2L 17457870..17458025 156..1 780 100 Minus
2L 23513712 2L 17457756..17457808 207..155 265 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17456667..17457694 1235..208 5140 100 Minus
2L 23513712 2L 17457870..17458025 156..1 780 100 Minus
2L 23513712 2L 17457756..17457808 207..155 265 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:04:52 has no hits.

LP21446.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:05:54 Download gff for LP21446.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 17455349..17456329 208..1188 99 <- Minus
chr2L 17456391..17456441 157..207 100 <- Minus
chr2L 17456505..17456660 1..156 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:44:17 Download gff for LP21446.complete
Subject Subject Range Query Range Percent Splice Strand
CG18563-RA 1..26 182..207 100 -> Plus
CG18563-RA 88..1020 208..1140 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:55:34 Download gff for LP21446.complete
Subject Subject Range Query Range Percent Splice Strand
CG18563-RB 1..1140 1..1140 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:59 Download gff for LP21446.complete
Subject Subject Range Query Range Percent Splice Strand
CG18563-RB 1..1140 1..1140 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:36:15 Download gff for LP21446.complete
Subject Subject Range Query Range Percent Splice Strand
CG18563-RA 1..26 182..207 100 -> Plus
CG18563-RA 88..1020 208..1140 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:58 Download gff for LP21446.complete
Subject Subject Range Query Range Percent Splice Strand
CG18563-RB 1..1140 1..1140 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:32:10 Download gff for LP21446.complete
Subject Subject Range Query Range Percent Splice Strand
CG18563-RA 1..26 182..207 100 -> Plus
CG18563-RA 88..1027 208..1147 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:55:34 Download gff for LP21446.complete
Subject Subject Range Query Range Percent Splice Strand
CG18563-RB 1..1232 1..1232 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:59 Download gff for LP21446.complete
Subject Subject Range Query Range Percent Splice Strand
CG18563-RB 20..1251 1..1232 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:36:15 Download gff for LP21446.complete
Subject Subject Range Query Range Percent Splice Strand
CG18563-RA 1..26 182..207 100 -> Plus
CG18563-RA 88..1027 208..1147 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:58 Download gff for LP21446.complete
Subject Subject Range Query Range Percent Splice Strand
CG18563-RB 20..1251 1..1232 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:05:54 Download gff for LP21446.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17456670..17457694 208..1232 100 <- Minus
2L 17457756..17457806 157..207 100 <- Minus
2L 17457870..17458025 1..156 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:05:54 Download gff for LP21446.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17456670..17457694 208..1232 100 <- Minus
2L 17457756..17457806 157..207 100 <- Minus
2L 17457870..17458025 1..156 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:05:54 Download gff for LP21446.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17456670..17457694 208..1232 100 <- Minus
2L 17457756..17457806 157..207 100 <- Minus
2L 17457870..17458025 1..156 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:59 Download gff for LP21446.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17456670..17457694 208..1232 100 <- Minus
arm_2L 17457756..17457806 157..207 100 <- Minus
arm_2L 17457870..17458025 1..156 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:14:51 Download gff for LP21446.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17456670..17457694 208..1232 100 <- Minus
2L 17457756..17457806 157..207 100 <- Minus
2L 17457870..17458025 1..156 100   Minus

LP21446.pep Sequence

Translation from 0 to 1139

> LP21446.pep
MGSIVATAAILLFCVLSGEACRYCVPMEKCLILSRKLNSCPFNHVCCDII
IKSPYIPSGPNEESDSESASSSTEEENIPTFIYFPTRPTVSSEPQNNVST
EPDVPITYWPLKGSGAPTNDGAQAEQPKPTERTQPGGRCNTTGLYSWVVA
LFYEEVYLTGGSLISPKVILTAAHNTMNKMNEDRIVVRAGEFVMNTTNEP
IQYEERVVERIVRHEGFIFQSGINNVALIFVKTPFVLNDRIGVLTLPSRQ
ASFEGRRCTVAGWDLVSSHDQSRMRIIKKLELTVLDRTTCVAQFRNTTLG
RNFDLHPSLICARSEINRDFCFGGGGYALFCSLGDENPHVFEQAGIVAWG
MGCGLDLPGIYTNVAMFRSWIYNRIAYFG*

LP21446.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13091-PA 347 GF13091-PA 81..333 129..375 503 41.6 Plus
Dana\GF12376-PA 457 GF12376-PA 209..453 140..379 432 36.4 Plus
Dana\GF12570-PA 448 GF12570-PA 201..442 143..379 408 34.7 Plus
Dana\GF14116-PA 400 GF14116-PA 157..398 143..376 391 38.5 Plus
Dana\GF19829-PA 216 GF19829-PA 4..194 185..375 367 38.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23951-PA 413 GG23951-PA 165..404 143..378 441 39.7 Plus
Dere\GG23377-PA 447 GG23377-PA 201..440 145..379 418 36.4 Plus
Dere\GG10625-PA 437 GG10625-PA 190..431 143..379 388 32.8 Plus
Dere\GG25170-PA 442 GG25170-PA 117..341 147..371 381 38.6 Plus
Dere\GG24481-PA 341 GG24481-PA 77..324 114..375 370 33.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13850-PA 400 GH13850-PA 154..389 145..376 439 39.9 Plus
Dgri\GH10384-PA 371 GH10384-PA 119..356 143..378 420 37.5 Plus
Dgri\GH21265-PA 363 GH21265-PA 119..347 143..371 383 37.2 Plus
Dgri\GH20539-PA 450 GH20539-PA 206..440 145..374 379 34.6 Plus
Dgri\GH20108-PA 389 GH20108-PA 142..381 143..379 373 36 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG18563-PB 379 CG18563-PB 1..379 1..379 2019 100 Plus
SPH93-PA 494 CG6639-PA 205..489 110..378 593 44.3 Plus
CG14990-PA 322 CG14990-PA 67..302 140..376 529 46.2 Plus
CG3117-PB 347 CG3117-PB 69..328 92..371 467 39.5 Plus
CG31827-PA 294 CG31827-PA 55..284 145..375 455 41.4 Plus
CG18478-PA 294 CG18478-PA 55..284 145..375 455 41.4 Plus
CG5390-PB 406 CG5390-PB 158..390 143..371 422 40.4 Plus
CG5390-PA 406 CG5390-PA 158..390 143..371 422 40.4 Plus
CG31780-PB 464 CG31780-PB 120..344 147..371 412 40.8 Plus
CG18477-PA 464 CG18477-PA 120..344 147..371 412 40.8 Plus
CG4793-PD 910 CG4793-PD 108..339 143..375 410 39.6 Plus
CG8738-PA 459 CG8738-PA 213..452 145..379 408 35.1 Plus
CG8586-PC 444 CG8586-PC 197..438 143..379 368 32.8 Plus
CG8586-PB 444 CG8586-PB 197..438 143..379 368 32.8 Plus
CG8586-PA 444 CG8586-PA 197..438 143..379 368 32.8 Plus
CG18557-PA 343 CG18557-PA 95..324 145..375 354 33.5 Plus
CG40160-PH 421 CG40160-PH 174..405 143..371 348 34.3 Plus
CG40160-PG 421 CG40160-PG 174..405 143..371 348 34.3 Plus
CG40160-PF 421 CG40160-PF 174..405 143..371 348 34.3 Plus
CG40160-PE 421 CG40160-PE 174..405 143..371 348 34.3 Plus
CG40160-PD 421 CG40160-PD 174..405 143..371 348 34.3 Plus
CG40160-PA 421 CG40160-PA 174..405 143..371 348 34.3 Plus
CG4998-PA 891 CG4998-PA 652..883 143..371 318 33.6 Plus
CG4998-PB 1185 CG4998-PB 946..1177 143..371 318 33.6 Plus
CG13318-PA 405 CG13318-PA 157..399 127..371 313 33.9 Plus
l(2)k05911-PC 639 CG31728-PC 347..638 85..375 282 29.4 Plus
CG8172-PD 371 CG8172-PD 109..362 116..371 265 29.8 Plus
CG8172-PE 545 CG8172-PE 302..536 136..371 263 30.2 Plus
CG8172-PF 561 CG8172-PF 318..552 136..371 263 30.2 Plus
mas-PC 1046 CG15002-PC 804..1037 136..371 263 32 Plus
mas-PB 1047 CG15002-PB 805..1038 136..371 263 32 Plus
CG9377-PA 355 CG9377-PA 110..339 143..371 238 30.5 Plus
CG11836-PI 281 CG11836-PI 47..274 136..375 236 28.2 Plus
CG11836-PJ 333 CG11836-PJ 99..326 136..375 236 28.2 Plus
Sb-PB 787 CG4316-PB 472..786 69..375 232 25.5 Plus
Sb-PA 787 CG4316-PA 472..786 69..375 232 25.5 Plus
Np-PB 1041 CG34350-PB 733..1041 66..378 219 26 Plus
Np-PA 1041 CG34350-PA 733..1041 66..378 219 26 Plus
CG9294-PB 352 CG9294-PB 103..334 136..371 217 28.7 Plus
CG11836-PF 223 CG11836-PF 4..216 151..375 212 28.3 Plus
CG11836-PE 223 CG11836-PE 4..216 151..375 212 28.3 Plus
CG11836-PG 223 CG11836-PG 4..216 151..375 212 28.3 Plus
CG11836-PC 223 CG11836-PC 4..216 151..375 212 28.3 Plus
CG11836-PA 223 CG11836-PA 4..216 151..375 212 28.3 Plus
CG11836-PB 223 CG11836-PB 4..216 151..375 212 28.3 Plus
CG8172-PG 192 CG8172-PG 3..183 187..371 211 29.4 Plus
betaTry-PB 253 CG18211-PB 33..251 136..373 211 25.1 Plus
betaTry-PA 253 CG18211-PA 33..251 136..373 211 25.1 Plus
CG8299-PA 260 CG8299-PA 50..252 153..371 210 24 Plus
gammaTry-PA 253 CG30028-PA 33..249 136..371 207 24.9 Plus
deltaTry-PA 253 CG12351-PA 33..249 136..371 207 24.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19467-PA 398 GI19467-PA 150..387 143..376 459 42.1 Plus
Dmoj\GI24370-PA 420 GI24370-PA 173..408 143..375 397 36.6 Plus
Dmoj\GI20774-PA 454 GI20774-PA 208..447 145..379 385 34.2 Plus
Dmoj\GI18807-PA 438 GI18807-PA 193..424 145..371 380 34.2 Plus
Dmoj\GI23068-PA 387 GI23068-PA 154..386 143..376 337 34.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26286-PA 294 GL26286-PA 62..290 145..375 505 44.4 Plus
Dper\GL15455-PA 294 GL15455-PA 60..290 143..375 504 44 Plus
Dper\GL26716-PA 298 GL26716-PA 60..290 143..375 501 43.6 Plus
Dper\GL18967-PA 402 GL18967-PA 156..393 145..378 444 41.2 Plus
Dper\GL26715-PA 220 GL26715-PA 2..203 172..375 431 43.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29037-PA 335 GA29037-PA 1..331 1..375 515 34.8 Plus
Dpse\GA29220-PA 290 GA29220-PA 60..290 143..375 507 44.4 Plus
Dpse\GA29036-PA 484 GA29036-PA 114..348 143..376 421 40.1 Plus
Dpse\GA21292-PA 462 GA21292-PA 211..455 140..379 415 37.2 Plus
Dpse\GA26264-PA 429 GA26264-PA 182..421 143..379 394 36.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17127-PA 447 GM17127-PA 207..439 145..378 580 47.7 Plus
Dsec\GM18188-PA 346 GM18188-PA 102..327 145..371 489 44.3 Plus
Dsec\GM11791-PA 405 GM11791-PA 157..396 143..378 438 39.3 Plus
Dsec\GM16118-PA 457 GM16118-PA 110..338 143..371 409 39.7 Plus
Dsec\GM21057-PA 459 GM21057-PA 213..452 145..379 408 34.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21868-PA 202 GD21868-PA 1..202 177..379 680 67.2 Plus
Dsim\GD21869-PA 544 GD21869-PA 232..534 61..378 569 40.8 Plus
Dsim\GD13811-PA 323 GD13811-PA 36..302 94..376 560 42.6 Plus
Dsim\GD10182-PA 326 GD10182-PA 77..304 143..371 499 44.4 Plus
Dsim\GD22795-PA 346 GD22795-PA 102..327 145..371 480 43.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21928-PA 395 GJ21928-PA 147..384 143..376 475 42.9 Plus
Dvir\GJ18190-PA 289 GJ18190-PA 19..285 121..378 437 34.6 Plus
Dvir\GJ18191-PA 478 GJ18191-PA 213..443 145..371 433 39.1 Plus
Dvir\GJ18039-PA 571 GJ18039-PA 327..555 143..371 384 35.5 Plus
Dvir\GJ21834-PA 442 GJ21834-PA 201..437 145..376 383 35.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21569-PA 454 GK21569-PA 207..444 143..375 412 36.2 Plus
Dwil\GK24265-PA 294 GK24265-PA 16..282 105..375 378 34.8 Plus
Dwil\GK21734-PA 470 GK21734-PA 216..456 145..371 343 32.5 Plus
Dwil\GK11266-PA 405 GK11266-PA 156..403 127..375 324 32.9 Plus
Dwil\GK19365-PA 210 GK19365-PA 1..198 180..375 298 34.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13134-PA 340 GE13134-PA 1..340 27..379 869 48 Plus
Dyak\GE13135-PA 485 GE13135-PA 248..480 145..378 574 46.8 Plus
Dyak\GE21411-PA 305 GE21411-PA 63..295 143..376 546 45.1 Plus
Dyak\GE14996-PA 337 GE14996-PA 75..325 129..371 480 41.9 Plus
Dyak\GE19385-PA 366 GE19385-PA 113..340 147..375 466 42.4 Plus

LP21446.hyp Sequence

Translation from 1 to 1139

> LP21446.hyp
MGSIVATAAILLFCVLSGEACRYCVPMEKCLILSRKLNSCPFNHVCCDII
IKSPYIPSGPNEESDSESASSSTEEENIPTFIYFPTRPTVSSEPQNNVST
EPDVPITYWPLKGSGAPTNDGAQAEQPKPTERTQPGGRCNTTGLYSWVVA
LFYEEVYLTGGSLISPKVILTAAHNTMNKMNEDRIVVRAGEFVMNTTNEP
IQYEERVVERIVRHEGFIFQSGINNVALIFVKTPFVLNDRIGVLTLPSRQ
ASFEGRRCTVAGWDLVSSHDQSRMRIIKKLELTVLDRTTCVAQFRNTTLG
RNFDLHPSLICARSEINRDFCFGGGGYALFCSLGDENPHVFEQAGIVAWG
MGCGLDLPGIYTNVAMFRSWIYNRIAYFG*

LP21446.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG18563-PB 379 CG18563-PB 1..379 1..379 2019 100 Plus
SPH93-PA 494 CG6639-PA 205..489 110..378 593 44.3 Plus
CG14990-PA 322 CG14990-PA 67..302 140..376 529 46.2 Plus
CG3117-PB 347 CG3117-PB 69..328 92..371 467 39.5 Plus
CG18478-PA 294 CG18478-PA 55..284 145..375 455 41.4 Plus