Clone LP21640 Report

Search the DGRC for LP21640

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:216
Well:40
Vector:pOT2
Associated Gene/TranscriptCG7025-RA
Protein status:LP21640.pep: gold
Sequenced Size:1361

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7025 2003-01-01 Sim4 clustering to Release 3
CG7025 2004-12-02 Blastp of sequenced clone
CG7025 2008-04-29 Release 5.5 accounting
CG7025 2008-08-15 Release 5.9 accounting
CG7025 2008-12-18 5.12 accounting

Clone Sequence Records

LP21640.complete Sequence

1361 bp (1361 high quality bases) assembled on 2004-12-02

GenBank Submission: BT021344

> LP21640.complete
AATAAGCATGGCGCTAAATAGTTTACCTATAGTCCTGGCATTGGTAGTCT
TGGCTCAAGGAGCAAGCTTTGGGCAGGACGAAAGACTGCGCTATGACAAC
TACTCGGTTTATAAAGTCAAGTTTGAAACTCAGGCGCAGAGAAGTATCCT
AAGGAAGCTTGCAGAAGATCGAGAAAATTTCAGGTTGTGGCATGAAGCCA
AGGATGAGTTACACCTGATGCTAAGTCCAGGTGCCTTTGGCGAACTTGAG
ACTGAAATTCAGAAAACCAATGTCACTGCAGAGCTGTTCATCAGCAATGT
GCAGGAACTCATCGATTCGGAGGAAGCTGCCAATCTGAAAGCCAGCAGAG
ATGGAACATTTGGTTGGACGAAGTACAATTCTCTGGCCGAAATTTATGCT
TGGTTGGACGATATACTAGCTGCTTATCCAACGATAACAGAGAGTTTTAT
AGTGGGTCAATCGTACGAGGGACGCACCATTCGGGGCATAAAGATCTCCT
ATAAGTCGAATAACCCAGGTGTGCTTATTGAGTCCAATATACATGCAAGG
GAGTGGATCACCTCTGCGACAGCCACTTGGCTGATAAACGAGTTCCTTAC
CTCTACGGATGAATTAGTGCGGGATCTTGCGGAGAATCACGACTGGTATA
TAGTGCCAGTGCTGAATGTCGACGGTTTTGTGTACACTCATGAAAAGGAT
CGCATGTGGCGAAAGACCCGTCAACCCTCCGAAATTTCTAGTTGCATTGG
AGCAGACCCCAATCGAAACTACGATTCGCATTGGATGGAGAACGAGGGGG
CTTCTTCGAATCCCTGTGCTGAGGATTACGGTGGACCCAAGCCCTTTTCG
GAGCCTGAAATCCAGGCCATGTCTGAGTTTGTAATCAGCATCAAGGATAA
AATCAATGTTTTGCTCGCGTTCCACTCGTATAGTCAGCTTTTGCTCTCTC
CCTATGGACACACTAAAGAGGAGTTTCCTCCCAATTTTGATGATATGATG
GAAGTTGCTAAGGCCTATGGAGATGCTGTTGAGAGCCTACCTTATGGAAC
CGTTTACAGATACGGCTCAGCTGCGGGCATTCTTTATCCCGCGTCTGGAG
CCACCATCGATTGGGCATACAATGAACAAGGAGTGGAGATATCGTATACC
ATTGAATTTAGGGACACCGGTCGATATGGTTTTATCCTGCCACCGGTGCA
CATTATTCCAAACGCAGAGGAGGCACTAATCGGCATTGCTGCCCTATTAG
AAAAGTGTAAAGACCTCGGCTATCTCGGGCTTAAGAGCGCGCTGTAAGTG
CTGGGGAAATTCAATGTGCAATAAAACAATAAAGATTAACTGCAAAAAAA
AAAAAAAAAAA

LP21640.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7025-RA 1490 CG7025-RA 139..1482 1..1344 6720 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7690961..7691352 698..307 1960 100 Minus
chr2L 23010047 chr2L 7690518..7690907 1085..696 1950 100 Minus
chr2L 23010047 chr2L 7690201..7690458 1343..1086 1260 99.2 Minus
chr2L 23010047 chr2L 7691591..7691768 178..1 890 100 Minus
chr2L 23010047 chr2L 7691412..7691539 306..179 640 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:59:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7691869..7692260 698..307 1960 100 Minus
2L 23513712 2L 7691426..7691815 1085..696 1950 100 Minus
2L 23513712 2L 7691108..7691366 1344..1086 1295 100 Minus
2L 23513712 2L 7692499..7692676 178..1 890 100 Minus
2L 23513712 2L 7692320..7692447 306..179 640 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7691869..7692260 698..307 1960 100 Minus
2L 23513712 2L 7691426..7691815 1085..696 1950 100 Minus
2L 23513712 2L 7691108..7691366 1344..1086 1295 100 Minus
2L 23513712 2L 7692499..7692676 178..1 890 100 Minus
2L 23513712 2L 7692320..7692447 306..179 640 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:38:11 has no hits.

LP21640.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:38:59 Download gff for LP21640.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7690201..7690458 1086..1343 99 <- Minus
chr2L 7690518..7690905 698..1085 100 <- Minus
chr2L 7690962..7691352 307..697 100 <- Minus
chr2L 7691412..7691539 179..306 100 <- Minus
chr2L 7691591..7691768 1..178 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:44:19 Download gff for LP21640.complete
Subject Subject Range Query Range Percent Splice Strand
CG7025-RA 1..1290 8..1297 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:24:12 Download gff for LP21640.complete
Subject Subject Range Query Range Percent Splice Strand
CG7025-RA 1..1290 8..1297 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:15:11 Download gff for LP21640.complete
Subject Subject Range Query Range Percent Splice Strand
CG7025-RA 1..1290 8..1297 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:08:26 Download gff for LP21640.complete
Subject Subject Range Query Range Percent Splice Strand
CG7025-RA 1..1290 8..1297 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:41 Download gff for LP21640.complete
Subject Subject Range Query Range Percent Splice Strand
CG7025-RA 1..1290 8..1297 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:26:10 Download gff for LP21640.complete
Subject Subject Range Query Range Percent Splice Strand
CG7025-RA 1..1343 1..1343 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:24:12 Download gff for LP21640.complete
Subject Subject Range Query Range Percent Splice Strand
CG7025-RA 8..1350 1..1343 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:15:11 Download gff for LP21640.complete
Subject Subject Range Query Range Percent Splice Strand
CG7025-RA 8..1350 1..1343 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:08:27 Download gff for LP21640.complete
Subject Subject Range Query Range Percent Splice Strand
CG7025-RA 1..1343 1..1343 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:41 Download gff for LP21640.complete
Subject Subject Range Query Range Percent Splice Strand
CG7025-RA 8..1350 1..1343 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:38:59 Download gff for LP21640.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7692320..7692447 179..306 100 <- Minus
2L 7692499..7692676 1..178 100   Minus
2L 7691109..7691366 1086..1343 100 <- Minus
2L 7691426..7691813 698..1085 100 <- Minus
2L 7691870..7692260 307..697 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:38:59 Download gff for LP21640.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7692320..7692447 179..306 100 <- Minus
2L 7692499..7692676 1..178 100   Minus
2L 7691109..7691366 1086..1343 100 <- Minus
2L 7691426..7691813 698..1085 100 <- Minus
2L 7691870..7692260 307..697 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:38:59 Download gff for LP21640.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7692320..7692447 179..306 100 <- Minus
2L 7692499..7692676 1..178 100   Minus
2L 7691109..7691366 1086..1343 100 <- Minus
2L 7691426..7691813 698..1085 100 <- Minus
2L 7691870..7692260 307..697 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:11 Download gff for LP21640.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7691109..7691366 1086..1343 100 <- Minus
arm_2L 7691426..7691813 698..1085 100 <- Minus
arm_2L 7691870..7692260 307..697 100 <- Minus
arm_2L 7692320..7692447 179..306 100 <- Minus
arm_2L 7692499..7692676 1..178 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:44:39 Download gff for LP21640.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7691109..7691366 1086..1343 100 <- Minus
2L 7691426..7691813 698..1085 100 <- Minus
2L 7691870..7692260 307..697 100 <- Minus
2L 7692320..7692447 179..306 100 <- Minus
2L 7692499..7692676 1..178 100   Minus

LP21640.hyp Sequence

Translation from 0 to 1296

> LP21640.hyp
ISMALNSLPIVLALVVLAQGASFGQDERLRYDNYSVYKVKFETQAQRSIL
RKLAEDRENFRLWHEAKDELHLMLSPGAFGELETEIQKTNVTAELFISNV
QELIDSEEAANLKASRDGTFGWTKYNSLAEIYAWLDDILAAYPTITESFI
VGQSYEGRTIRGIKISYKSNNPGVLIESNIHAREWITSATATWLINEFLT
STDELVRDLAENHDWYIVPVLNVDGFVYTHEKDRMWRKTRQPSEISSCIG
ADPNRNYDSHWMENEGASSNPCAEDYGGPKPFSEPEIQAMSEFVISIKDK
INVLLAFHSYSQLLLSPYGHTKEEFPPNFDDMMEVAKAYGDAVESLPYGT
VYRYGSAAGILYPASGATIDWAYNEQGVEISYTIEFRDTGRYGFILPPVH
IIPNAEEALIGIAALLEKCKDLGYLGLKSAL*

LP21640.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7025-PA 429 CG7025-PA 1..429 3..431 2245 100 Plus
CG18585-PB 422 CG18585-PB 6..422 10..425 1303 55.4 Plus
CG18585-PA 422 CG18585-PA 6..422 10..425 1303 55.4 Plus
CG14820-PA 416 CG14820-PA 19..416 27..425 904 45.9 Plus
CG17633-PA 430 CG17633-PA 1..428 3..424 766 38.4 Plus

LP21640.pep Sequence

Translation from 7 to 1296

> LP21640.pep
MALNSLPIVLALVVLAQGASFGQDERLRYDNYSVYKVKFETQAQRSILRK
LAEDRENFRLWHEAKDELHLMLSPGAFGELETEIQKTNVTAELFISNVQE
LIDSEEAANLKASRDGTFGWTKYNSLAEIYAWLDDILAAYPTITESFIVG
QSYEGRTIRGIKISYKSNNPGVLIESNIHAREWITSATATWLINEFLTST
DELVRDLAENHDWYIVPVLNVDGFVYTHEKDRMWRKTRQPSEISSCIGAD
PNRNYDSHWMENEGASSNPCAEDYGGPKPFSEPEIQAMSEFVISIKDKIN
VLLAFHSYSQLLLSPYGHTKEEFPPNFDDMMEVAKAYGDAVESLPYGTVY
RYGSAAGILYPASGATIDWAYNEQGVEISYTIEFRDTGRYGFILPPVHII
PNAEEALIGIAALLEKCKDLGYLGLKSAL*

LP21640.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14014-PA 428 GF14014-PA 1..427 1..427 1895 79.4 Plus
Dana\GF14015-PA 351 GF14015-PA 1..351 71..423 1220 60.7 Plus
Dana\GF23551-PA 416 GF23551-PA 19..416 25..423 928 47.4 Plus
Dana\GF23552-PA 416 GF23552-PA 19..416 25..423 919 47.2 Plus
Dana\GF22810-PA 427 GF22810-PA 23..425 25..423 796 40.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23518-PA 429 GG23518-PA 17..429 17..429 2131 94.7 Plus
Dere\GG23519-PA 422 GG23519-PA 6..422 9..423 1335 56.8 Plus
Dere\GG14391-PA 416 GG14391-PA 2..416 3..423 891 44.7 Plus
Dere\GG10055-PA 429 GG10055-PA 7..428 8..423 770 38.5 Plus
Dere\GG10693-PA 417 GG10693-PA 8..415 18..422 730 39 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10071-PA 430 GH10071-PA 1..427 1..426 1545 65.8 Plus
Dgri\GH10072-PA 421 GH10072-PA 6..421 8..423 1236 52.9 Plus
Dgri\GH15366-PA 440 GH15366-PA 25..432 8..421 947 46.2 Plus
Dgri\GH25145-PA 426 GH25145-PA 17..425 20..423 789 39.9 Plus
Dgri\GH25146-PA 426 GH25146-PA 17..425 20..423 775 39.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7025-PA 429 CG7025-PA 1..429 1..429 2245 100 Plus
CG18585-PB 422 CG18585-PB 6..422 8..423 1303 55.4 Plus
CG18585-PA 422 CG18585-PA 6..422 8..423 1303 55.4 Plus
CG14820-PA 416 CG14820-PA 19..416 25..423 904 45.9 Plus
CG17633-PA 430 CG17633-PA 1..428 1..422 766 38.4 Plus
CG12374-PA 422 CG12374-PA 3..419 6..421 741 36.8 Plus
CG4017-PA 424 CG4017-PA 19..421 25..422 732 37.6 Plus
CG2915-PA 453 CG2915-PA 51..451 25..422 711 38.2 Plus
CG2915-PB 453 CG2915-PB 51..451 25..422 711 38.2 Plus
CG3108-PA 1132 CG3108-PA 722..1102 28..407 605 34.1 Plus
CG4408-PB 467 CG4408-PB 68..465 28..422 581 33.3 Plus
CG4408-PA 479 CG4408-PA 80..477 28..422 581 33.3 Plus
CG8562-PA 424 CG8562-PA 5..419 10..416 575 35.2 Plus
CG18417-PA 427 CG18417-PA 6..419 8..416 567 35.9 Plus
CG8560-PB 418 CG8560-PB 21..416 29..419 527 33.3 Plus
CG8560-PA 418 CG8560-PA 21..416 29..419 527 33.3 Plus
CG3097-PA 445 CG3097-PA 40..427 28..405 516 30.5 Plus
CG32379-PB 344 CG32379-PB 9..334 92..413 506 33.2 Plus
CG8945-PC 1430 CG8945-PC 978..1428 26..415 448 25.9 Plus
CG8563-PB 440 CG8563-PB 28..406 29..383 432 28.5 Plus
CG8563-PA 440 CG8563-PA 28..406 29..383 432 28.5 Plus
CG42264-PA 634 CG42264-PA 219..621 28..405 369 23.5 Plus
CG42264-PB 521 CG42264-PB 136..508 60..405 361 23.4 Plus
CG8539-PB 385 CG8539-PB 21..335 106..416 297 26.7 Plus
CG8539-PA 385 CG8539-PA 21..335 106..416 297 26.7 Plus
CG8564-PA 504 CG8564-PA 123..365 172..420 287 32.3 Plus
CG8564-PC 520 CG8564-PC 139..381 172..420 287 32.3 Plus
CG43235-PA 103 CG43235-PA 5..101 8..103 166 36.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16514-PA 434 GI16514-PA 29..425 25..423 1476 67.2 Plus
Dmoj\GI16517-PA 421 GI16517-PA 6..421 8..423 1242 52.1 Plus
Dmoj\GI12970-PA 416 GI12970-PA 3..416 6..423 937 46 Plus
Dmoj\GI12969-PA 416 GI12969-PA 20..416 26..423 887 44.8 Plus
Dmoj\GI12968-PA 416 GI12968-PA 19..416 25..423 867 43.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18860-PA 429 GL18860-PA 16..429 15..429 1833 81 Plus
Dper\GL13278-PA 358 GL13278-PA 33..358 102..423 814 49.7 Plus
Dper\GL18934-PA 425 GL18934-PA 23..424 25..423 773 39.8 Plus
Dper\GL17014-PA 425 GL17014-PA 28..422 27..421 720 36.7 Plus
Dper\GL10609-PA 428 GL10609-PA 14..426 13..422 703 37.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20041-PA 429 GA20041-PA 6..429 5..429 1858 80.7 Plus
Dpse\GA15002-PA 423 GA15002-PA 11..423 12..423 1320 56.1 Plus
Dpse\GA13272-PA 416 GA13272-PA 7..416 8..423 923 45.7 Plus
Dpse\GA14587-PA 425 GA14587-PA 23..424 25..423 775 39.8 Plus
Dpse\GA11590-PA 425 GA11590-PA 28..422 27..421 724 37 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13458-PA 429 GM13458-PA 1..429 1..429 2234 97.4 Plus
Dsec\GM13467-PA 422 GM13467-PA 4..422 6..423 1325 55.1 Plus
Dsec\GM14804-PA 416 GM14804-PA 2..416 3..423 914 44.9 Plus
Dsec\GM17695-PA 429 GM17695-PA 7..428 8..423 749 38.2 Plus
Dsec\GM17686-PA 424 GM17686-PA 3..421 10..422 738 37.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22481-PA 429 GD22481-PA 1..429 1..429 2231 97.4 Plus
Dsim\GD22482-PA 422 GD22482-PA 4..422 6..423 1329 55.8 Plus
Dsim\GD23629-PA 430 GD23629-PA 7..429 8..423 773 38.7 Plus
Dsim\GD23628-PA 424 GD23628-PA 3..421 10..422 731 37.1 Plus
Dsim\GD10919-PA 422 GD10919-PA 3..419 6..421 724 37 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16227-PA 430 GJ16227-PA 1..425 1..423 1587 67.9 Plus
Dvir\GJ16228-PA 421 GJ16228-PA 6..421 8..423 1284 54 Plus
Dvir\GJ13115-PA 416 GJ13115-PA 19..416 25..423 930 46.9 Plus
Dvir\GJ13502-PA 426 GJ13502-PA 17..425 20..423 814 41.5 Plus
Dvir\GJ13514-PA 426 GJ13514-PA 17..425 20..423 803 40.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23954-PA 425 GK23954-PA 1..425 1..429 1601 68.4 Plus
Dwil\GK23952-PA 418 GK23952-PA 1..418 1..423 1224 51.7 Plus
Dwil\GK23953-PA 418 GK23953-PA 1..418 1..423 1223 51.9 Plus
Dwil\GK23955-PA 429 GK23955-PA 26..429 26..423 1151 52.3 Plus
Dwil\GK12561-PA 417 GK12561-PA 4..417 8..423 916 44.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18344-PA 429 GE18344-PA 1..429 1..429 2140 94.6 Plus
Dyak\GE18345-PA 422 GE18345-PA 4..422 6..423 1334 55.8 Plus
Dyak\GE21580-PA 409 GE21580-PA 12..409 25..423 903 46.2 Plus
Dyak\GE18869-PA 430 GE18869-PA 7..429 8..423 773 38.7 Plus
Dyak\GE18868-PA 424 GE18868-PA 3..421 10..422 750 38.3 Plus