BDGP Sequence Production Resources |
Search the DGRC for LP21789
Library: | LP |
Tissue Source: | Drosophila melanogaster larval-early pupal |
Created by: | Ling Hong |
Date Registered: | 1998-06-11 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 217 |
Well: | 89 |
Vector: | pOT2 |
Associated Gene/Transcript | Sdc-RD |
Protein status: | LP21789.pep: gold |
Sequenced Size: | 1847 |
Gene | Date | Evidence |
---|---|---|
Sdc-RD | 2010-11-11 | Gleaning Pick By Joe Carlson |
1847 bp assembled on 2010-12-09
GenBank Submission: BT125826.1
> LP21789.complete CGGTTACGTCCGGATTTTAGCGCGATTTCGTGTCTGTTGTTTGGTCGGCA CTCGAGTGTAAAGAAATTTGTACATCCCCGAAAAGAATCGCGAGTGCAAT TTTGTAAATACGGAGAGGAAAAGCGTTCTTCTAGTGTGAAACCAGTTTAA AAAGCTGCAAGAAATATATATAGCTCAATATATATATTTATATATGTGTG CCGCCGCCAGTTCTAATCTTTAAATCAATAAACAAAACTGGAAGCCATTA GCTGAAATCACAACAACAGCAACCGCAGAAGAAACCAACGGGGAAAATGA AGCCAAAGCAGAAGATTTCCGTAGAGCCGCTATTGCTAGTCGCAATTCTC ATCGGAGTTCTGGTAGCCGCCACCCACGCTCAAGATCAGAAATCGGTGAA ACCATCGGCGGCAGCGCCATCAGCAGCAGCTTCTCGGCCCCATGATGAAA TCTATATCGACGATGATAGCATCGAGGGATCCGGCGGACGCGGCGGTATA CACGAAGATCTAGAGAAAGATCCGGACTATTCTGGCTCCGGCTTTGGACC CGATGACGAGGACGCCGAACCCGATCAGCATTCGCACAGTTCGCACAACA CGCGCATCTCGCAGAGCAGCAACTCCGGCATAAACACTCATACACCAACA CAAACCTCATCCACAATCCCAACAACATCGACTTCGACACCAATGCCGAC AACAACCCCCACAGCGACAACCCCCGCATCCACCACAACGGCGGCAGCAA CCCAGATATCGTCCTTTGCCAATAGCAGTAGCACCACCACCACCACGTTG GCTCCCACGATTCCCGCAGAACCGCAGCAACCGCTGTTCCCGCCATTCGA CAAGGATCTGGATACGGAGTCCAGCGGCGATGGCATCGATGCTGATGCTG AGGATGACGATGAGGACGATGGCGACGATAAGGACTATGACTATAACAAG GAGCTGGACAAAGAAATCGACATCGATGGTCCCGAGCCGGGACATCTGCC GCCAGTTGTCCATCATAATACCGTTGAAACTGGTCACATACCCACTACGG ATGAAATCGATGTGGATGGCGGCGATGAGGATGACAATGGGGATAGCGAC ATCGATGGTCCGCGGATCGGTGGCAACGATGGAGATATTACAGAGCGCGG ACCGGGTGCAGGTGGCAGCAACGTGCACGAATTGGACCCCAATACGAACG TGAATAGCCAGCCCTCCGACACAAAGGGCATCGATCACAGGCCCAACGGC AACGAAGTGGTCATCATGAGCGAGGACGATCGCACGTCGAGCTTCTTCTC GCAGCCCGGAATTCTGGCTGCTGTCATTGGCGGTGCCGTCGTTGGCCTGC TCTGCGCCATACTCGTGGTCATGTTCATCGTGTACCGCATGAGGAAAAAG GACGAGGGATCCTATGCGCTGGACGAGCCAAAGAGATCGCCGGCCAACAA TTCGTATGCGAAAAATGCGAATAACCGCGAGTTCTACGCCTGAGATAATG GCACGTCGCGCAGGTATTAAGTTGACCACAAGTGCAGGAACAAAGTGTGC GTAAGGACGGAACGGTGTGCGTATGACTGGACGAAGGCGGAGCGACTGGG TTTGGTTTGGCTCAACTGAATACACTGTGCGGAGTGGTGGGGGTGCAGCA TCATCGGCAAACCACTGAAACAAGGATTAATCATCCGCAGCAGCAGCTAC AAAACTAACACAAAAACAAATGAAAATTTCAAACGTTTTCAAACACACAC AATTTTTCGTGAGGGGTAAATTAAATTAAAACAAAACAAGAAAAGAACAC AAATCGGCAATATAATAACGAGGAAAAACAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 17284613..17285131 | 1152..637 | 2500 | 99.2 | Minus |
chr2R | 21145070 | chr2R | 17280773..17281283 | 1829..1320 | 2475 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 17366599..17366866 | 389..122 | 1340 | 100 | Minus |
chr2R | 21145070 | chr2R | 17281425..17281592 | 1320..1153 | 825 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 17285726..17285864 | 636..498 | 695 | 100 | Minus |
chr2R | 21145070 | chr2R | 17367522..17367644 | 123..1 | 600 | 99.2 | Minus |
chr2R | 21145070 | chr2R | 17298835..17298945 | 497..387 | 555 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 21394214..21394736 | 1842..1320 | 2615 | 100 | Minus |
2R | 25286936 | 2R | 21398065..21398580 | 1152..637 | 2580 | 100 | Minus |
2R | 25286936 | 2R | 21480091..21480358 | 389..122 | 1340 | 100 | Minus |
2R | 25286936 | 2R | 21394878..21395045 | 1320..1153 | 840 | 100 | Minus |
2R | 25286936 | 2R | 21399175..21399313 | 636..498 | 695 | 100 | Minus |
2R | 25286936 | 2R | 21481014..21481136 | 123..1 | 615 | 100 | Minus |
2R | 25286936 | 2R | 21412311..21412421 | 497..387 | 555 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 21395413..21395935 | 1842..1320 | 2615 | 100 | Minus |
2R | 25260384 | 2R | 21399264..21399779 | 1152..637 | 2580 | 100 | Minus |
2R | 25260384 | 2R | 21481290..21481557 | 389..122 | 1340 | 100 | Minus |
2R | 25260384 | 2R | 21396077..21396244 | 1320..1153 | 840 | 100 | Minus |
2R | 25260384 | 2R | 21400374..21400512 | 636..498 | 695 | 100 | Minus |
2R | 25260384 | 2R | 21482213..21482335 | 123..1 | 615 | 100 | Minus |
2R | 25260384 | 2R | 21413510..21413620 | 497..387 | 555 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2533 | 574..735 | 173 | 61.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2459..2530 | 1645..1713 | 118 | 68.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1060..1132 | 245..314 | 114 | 65.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 17298835..17298942 | 390..497 | 100 | <- | Minus |
chr2R | 17366599..17366864 | 124..389 | 100 | <- | Minus |
chr2R | 17367522..17367644 | 1..123 | 99 | Minus | |
chr2R | 17280837..17281282 | 1321..1765 | 99 | <- | Minus |
chr2R | 17281425..17281592 | 1153..1320 | 99 | <- | Minus |
chr2R | 17284613..17284812 | 953..1152 | 99 | == | Minus |
chr2R | 17284891..17285131 | 637..874 | 98 | <- | Minus |
chr2R | 17285726..17285864 | 498..636 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RD | 1..1197 | 297..1493 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RD | 1..1197 | 297..1493 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RD | 1..1197 | 297..1493 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RD | 40..1868 | 1..1829 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RD | 41..1869 | 1..1829 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RD | 41..1869 | 1..1829 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21394227..21394735 | 1321..1829 | 100 | <- | Minus |
2R | 21394878..21395045 | 1153..1320 | 100 | <- | Minus |
2R | 21398065..21398580 | 637..1152 | 100 | <- | Minus |
2R | 21399175..21399313 | 498..636 | 100 | <- | Minus |
2R | 21412311..21412418 | 390..497 | 100 | <- | Minus |
2R | 21480091..21480356 | 124..389 | 100 | <- | Minus |
2R | 21481014..21481136 | 1..123 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21394227..21394735 | 1321..1829 | 100 | <- | Minus |
2R | 21394878..21395045 | 1153..1320 | 100 | <- | Minus |
2R | 21398065..21398580 | 637..1152 | 100 | <- | Minus |
2R | 21399175..21399313 | 498..636 | 100 | <- | Minus |
2R | 21412311..21412418 | 390..497 | 100 | <- | Minus |
2R | 21480091..21480356 | 124..389 | 100 | <- | Minus |
2R | 21481014..21481136 | 1..123 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21394227..21394735 | 1321..1829 | 100 | <- | Minus |
2R | 21394878..21395045 | 1153..1320 | 100 | <- | Minus |
2R | 21398065..21398580 | 637..1152 | 100 | <- | Minus |
2R | 21399175..21399313 | 498..636 | 100 | <- | Minus |
2R | 21412311..21412418 | 390..497 | 100 | <- | Minus |
2R | 21480091..21480356 | 124..389 | 100 | <- | Minus |
2R | 21481014..21481136 | 1..123 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 17281732..17282240 | 1321..1829 | 100 | <- | Minus |
arm_2R | 17282383..17282550 | 1153..1320 | 100 | <- | Minus |
arm_2R | 17285570..17286085 | 637..1152 | 100 | <- | Minus |
arm_2R | 17286680..17286818 | 498..636 | 100 | <- | Minus |
arm_2R | 17299816..17299923 | 390..497 | 100 | <- | Minus |
arm_2R | 17367596..17367861 | 124..389 | 100 | <- | Minus |
arm_2R | 17368519..17368641 | 1..123 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21395426..21395934 | 1321..1829 | 100 | <- | Minus |
2R | 21396077..21396244 | 1153..1320 | 100 | <- | Minus |
2R | 21399264..21399779 | 637..1152 | 100 | <- | Minus |
2R | 21400374..21400512 | 498..636 | 100 | <- | Minus |
2R | 21413510..21413617 | 390..497 | 100 | <- | Minus |
2R | 21481290..21481555 | 124..389 | 100 | <- | Minus |
2R | 21482213..21482335 | 1..123 | 100 | Minus |
Translation from 296 to 1492
> LP21789.pep MKPKQKISVEPLLLVAILIGVLVAATHAQDQKSVKPSAAAPSAAASRPHD EIYIDDDSIEGSGGRGGIHEDLEKDPDYSGSGFGPDDEDAEPDQHSHSSH NTRISQSSNSGINTHTPTQTSSTIPTTSTSTPMPTTTPTATTPASTTTAA ATQISSFANSSSTTTTTLAPTIPAEPQQPLFPPFDKDLDTESSGDGIDAD AEDDDEDDGDDKDYDYNKELDKEIDIDGPEPGHLPPVVHHNTVETGHIPT TDEIDVDGGDEDDNGDSDIDGPRIGGNDGDITERGPGAGGSNVHELDPNT NVNSQPSDTKGIDHRPNGNEVVIMSEDDRTSSFFSQPGILAAVIGGAVVG LLCAILVVMFIVYRMRKKDEGSYALDEPKRSPANNSYAKNANNREFYA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12095-PA | 438 | GF12095-PA | 314..438 | 276..398 | 583 | 92 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20776-PA | 406 | GG20776-PA | 1..406 | 1..398 | 1259 | 81.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20057-PA | 120 | GH20057-PA | 5..120 | 275..398 | 533 | 81.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sdc-PD | 398 | CG10497-PD | 1..398 | 1..398 | 2092 | 100 | Plus |
Sdc-PA | 399 | CG10497-PA | 1..399 | 1..398 | 2080 | 99.7 | Plus |
Sdc-PI | 494 | CG10497-PI | 1..494 | 1..398 | 1541 | 66.2 | Plus |
Sdc-PJ | 495 | CG10497-PJ | 1..495 | 1..398 | 1527 | 66.3 | Plus |
Sdc-PH | 266 | CG10497-PH | 1..266 | 133..398 | 1411 | 100 | Plus |
Sdc-PK | 322 | CG10497-PK | 189..322 | 264..398 | 589 | 88.1 | Plus |
Sdc-PB | 226 | CG10497-PB | 1..114 | 1..114 | 587 | 100 | Plus |
Sdc-PK | 322 | CG10497-PK | 1..114 | 1..114 | 583 | 99.1 | Plus |
Sdc-PB | 226 | CG10497-PB | 57..226 | 252..398 | 582 | 72.9 | Plus |
Sdc-PG | 75 | CG10497-PG | 1..75 | 324..398 | 380 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20467-PA | 426 | GI20467-PA | 45..426 | 30..398 | 686 | 52.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17492-PA | 468 | GL17492-PA | 353..468 | 282..398 | 604 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10355-PB | 423 | GA10355-PB | 308..423 | 282..398 | 601 | 97.4 | Plus |
Dpse\GA10355-PD | 223 | GA10355-PD | 113..223 | 288..398 | 580 | 97.3 | Plus |
Dpse\GA10355-PD | 223 | GA10355-PD | 34..141 | 37..143 | 319 | 64.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15720-PA | 388 | GM15720-PA | 1..388 | 1..398 | 1885 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25198-PA | 398 | GD25198-PA | 1..398 | 1..398 | 1976 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22317-PA | 433 | GJ22317-PA | 327..433 | 293..398 | 524 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20743-PA | 570 | GK20743-PA | 32..142 | 12..110 | 246 | 61.3 | Plus |
Translation from 296 to 1492
> LP21789.hyp MKPKQKISVEPLLLVAILIGVLVAATHAQDQKSVKPSAAAPSAAASRPHD EIYIDDDSIEGSGGRGGIHEDLEKDPDYSGSGFGPDDEDAEPDQHSHSSH NTRISQSSNSGINTHTPTQTSSTIPTTSTSTPMPTTTPTATTPASTTTAA ATQISSFANSSSTTTTTLAPTIPAEPQQPLFPPFDKDLDTESSGDGIDAD AEDDDEDDGDDKDYDYNKELDKEIDIDGPEPGHLPPVVHHNTVETGHIPT TDEIDVDGGDEDDNGDSDIDGPRIGGNDGDITERGPGAGGSNVHELDPNT NVNSQPSDTKGIDHRPNGNEVVIMSEDDRTSSFFSQPGILAAVIGGAVVG LLCAILVVMFIVYRMRKKDEGSYALDEPKRSPANNSYAKNANNREFYA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sdc-PD | 398 | CG10497-PD | 1..398 | 1..398 | 2092 | 100 | Plus |
Sdc-PA | 399 | CG10497-PA | 1..399 | 1..398 | 2080 | 99.7 | Plus |
Sdc-PI | 494 | CG10497-PI | 1..494 | 1..398 | 1541 | 66.2 | Plus |
Sdc-PJ | 495 | CG10497-PJ | 1..495 | 1..398 | 1527 | 66.3 | Plus |
Sdc-PH | 266 | CG10497-PH | 1..266 | 133..398 | 1411 | 100 | Plus |