Clone LP22276 Report

Search the DGRC for LP22276

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:222
Well:76
Vector:pOT2
Associated Gene/TranscriptCG2182-RA
Protein status:LP22276.pep: gold
Sequenced Size:2415

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2182 2003-01-01 Sim4 clustering to Release 3
CG2182 2004-10-04 Blastp of sequenced clone
CG2182 2008-04-29 Release 5.5 accounting
CG2182 2008-08-15 Release 5.9 accounting
CG2182 2008-12-18 5.12 accounting

Clone Sequence Records

LP22276.complete Sequence

2415 bp (2415 high quality bases) assembled on 2004-10-04

GenBank Submission: BT016040

> LP22276.complete
CCGACTTGCTGCCTACTACGTGTTTGACATAGAAGACACTTTTGTAGCCG
ATTCTAGAGCGTTCCCAAAGCCACTCGAACTGCGCAGAGAGTGGATATTG
TTGTCAAAACACTATTTGTGAATACGCACGCTGCTGCCATACGCCAGTCG
ATTCTGATCTCCATTTCCCACACCCGGACCTCTAGAGAAAAGTGTGTGTC
TGTGTCGCAAAGTGCCTGAATTTTCGTTTTGCCCGTCGTTGGCTCGCGAA
GTCAAATTACCCATAATGGCCAGACTCACAAAGGTCTACAACACGGACGA
CGACGACTCCGGTTACGTTGGTCGCAGAAATTTGCCCCTGGTGGCTGGCG
ATAAATTAATGATGCTCATGGACCTGAACAGCAAAGGTCTAGTGATCGAC
AGTCCGCTGATCCGCGGACGTGAACTGGAGGAGTTTTCACGGAAATTCAA
ACTGCTCACAGAGGCCGAGCGCCGGCAATCGCTGGAGATCGACAGTGCCA
GTTTTATGGAAGTCCTCAATCAATGTGTCCAGTGCGTTGGCTGCCGCAGA
CGCGTAGAGCGGTTGTTTCACCAACTAACCGAGACGGGGCACCGAACACT
TGATCCGCTGGAACTGCGACCCACTGCCACCCTGGGCATTGTGGAGGAGA
AGCTTAAGACTCCGCAGGCACTGGGAACGCTGCTCTACCGGCACCATGAG
GTTCTCAACAACCTGCTGGACAACAAACTGCGAAACAAGACGCGCTGCGT
TCTTCATTCGCTGGACGCCTTTCGTGCCAAACCCTTTTCGGAGACATGGC
GAGAGGTGTGGTCCGCCATGAAGAGTAACTGCCGCAACGAGTTAACCATC
ATCGAGACAAAGGAATTGCACGACGTACTGGAGAACTACCTGAAGAAGCA
CAAGTTTTGCTCTGGCTGCCGTACAAAGATTGAGCGCGCCTACAAAATAC
TCATTGGTGAAATATCGTCCAAGGAGAAGGGCTATGCGGCCCAGTTGTAC
GCTCATATTCGGAAGTGCGTGCCCGACCAGCACATCCACGTGACCACAAA
CAAGATAGAGTTCCTGGACGCGCTGATCAAGCGGGCCGAGCCCGAGGTGA
ACGGTAGCTACTCTAAACTGCGCGAGCGCCACGCTAAGACGCTGGAGATT
GCCCAGGAAGAGGTGCTGACCTGCGTGGGCATGATTATGTACGAACGGCT
GCGTCGCATCTACGTCAGTCTGCGGGAGGAGGAGCGCGCATGCCAGGTGC
TGGCCGCTGTGGGTGTCCACGCCCTTTGCCGCAGCTTTGACACGTTCGTG
GAGCAGAAGCAGGGAATCAGCAATCTGGAGCTACTCTACCAAGAGATCAG
CCGTGCTGAGAGGGCCAAGCAGATCAAGCGCGAGCAGAAGAAGCTCAAGA
AGAAGAAGAAGAAGGACGAGAAAAAGAACTTGCTGCACCGGCAATGCGAC
GATACCGAGGCCAACGAGTCTGACGAGGAGGAGGAAGAGTTGCGGAATGA
GGAACTAGACCTGGAGGAGGAGAGTCAGATGCAGCATGAGGAGCTAAGCG
ATCCAGGTGCGGACGATGGCATTGTTATAGAGGCAGCCCGGAGCCCGGAG
CCCGAACCCGAGCTAACGTCCAAGCCAACGAAATCGAAACCGAAGAAGCA
ATCGAAGAAAAAGAAGCAGAAGAAAGCGGCCTTCACAAAGATGGGCAACC
AAAAGCAGATGCAAGCCACGGCTAGGGTCCAGCCGCTGGATGCTGATCAC
GATCAACTTGACGTGGCCAGTTGCATTTCGTCAAGCATCGCCAAAACGGT
TGGCGATAAGTGCGAGGAGTGCCTGGCGTCCATGCCTAACTGCCCGTGCG
AGCAGGATGTGCGCGATTCTGGATACGGCAGCGATCCACCTTCGCATGCC
GGCTCTCGGACATCTAGCGCGATTTCGTCACCAGAAGGCTCGGAAGTGTC
TTGCTCGGATGGACTGTGTAATCACGACGTCCACGATGAGGACTCAGACG
ACTTGCTCTTCTACAGTCACCAGTCGCAGTTGGATCACAAGTTTTCATTG
TTGCAGATGTGGGACGACTTCGACGAATACGACGACAAAGACGAGGAGAC
ATATTACATTCCCCAGGAGGTGGTTATGGCCTTCAAGTGCCACCGGGAGC
AAGTGCAGCGAAAGCGAGAGGAGCTCCGCGCAAAACTGCGCGCCAACTTC
GAGCGACTGTGCGTGCAGCACGGCGTTCAGACGCAGGTGCAGAAATCGAA
GCGGACGACTTCTGCACTGGTTGGCCAATGAAACGCATTAAACCGTTGTA
GTTATTCAGTCGGGCGCAGCGATTTTAAAAAATCCGCCCGCATGCATTCA
AAGTACATATAATTTTTGTTTTTGAAATAAATGAAGTATACAAGTTAAAA
AAAAAAAAAAAAAAA

LP22276.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2182-RA 2573 CG2182-RA 170..2566 1..2397 11985 100 Plus
CG2182.b 2432 CG2182.b 33..2425 1..2397 11900 99.8 Plus
CG2182.a 2514 CG2182.a 33..2094 1..2062 10310 100 Plus
CG2182.a 2514 CG2182.a 2173..2507 2063..2397 1675 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1482456..1483592 2063..927 5685 100 Minus
chr3R 27901430 chr3R 1483799..1484366 928..361 2840 100 Minus
chr3R 27901430 chr3R 1485193..1485553 361..1 1790 99.7 Minus
chr3R 27901430 chr3R 1481896..1482230 2396..2062 1675 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:59:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5656798..5657934 2063..927 5685 100 Minus
3R 32079331 3R 5658141..5658708 928..361 2840 100 Minus
3R 32079331 3R 5659535..5659895 361..1 1805 100 Minus
3R 32079331 3R 5656237..5656572 2397..2062 1680 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5397629..5398765 2063..927 5685 100 Minus
3R 31820162 3R 5398972..5399539 928..361 2840 100 Minus
3R 31820162 3R 5400366..5400726 361..1 1805 100 Minus
3R 31820162 3R 5397068..5397403 2397..2062 1680 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:04:00 has no hits.

LP22276.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:05:10 Download gff for LP22276.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1481896..1482229 2063..2396 100 <- Minus
chr3R 1482457..1483590 929..2062 96 <- Minus
chr3R 1483799..1484365 362..928 100 <- Minus
chr3R 1485193..1485553 1..361 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:44:33 Download gff for LP22276.complete
Subject Subject Range Query Range Percent Splice Strand
CG2182-RA 1..2016 266..2281 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:31:05 Download gff for LP22276.complete
Subject Subject Range Query Range Percent Splice Strand
CG2182-RA 1..2016 266..2281 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:05:59 Download gff for LP22276.complete
Subject Subject Range Query Range Percent Splice Strand
CG2182-RA 1..2016 266..2281 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:14:56 Download gff for LP22276.complete
Subject Subject Range Query Range Percent Splice Strand
CG2182-RA 1..2016 266..2281 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:32 Download gff for LP22276.complete
Subject Subject Range Query Range Percent Splice Strand
CG2182-RA 1..2016 266..2281 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:35:42 Download gff for LP22276.complete
Subject Subject Range Query Range Percent Splice Strand
CG2182-RA 15..2410 1..2396 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:31:04 Download gff for LP22276.complete
Subject Subject Range Query Range Percent Splice Strand
CG2182-RA 15..2410 1..2396 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:59 Download gff for LP22276.complete
Subject Subject Range Query Range Percent Splice Strand
CG2182-RA 18..2413 1..2396 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:14:56 Download gff for LP22276.complete
Subject Subject Range Query Range Percent Splice Strand
CG2182-RA 15..2410 1..2396 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:32 Download gff for LP22276.complete
Subject Subject Range Query Range Percent Splice Strand
CG2182-RA 18..2413 1..2396 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:10 Download gff for LP22276.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5656238..5656571 2063..2396 100 <- Minus
3R 5656799..5657932 929..2062 100 <- Minus
3R 5658141..5658707 362..928 100 <- Minus
3R 5659535..5659895 1..361 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:10 Download gff for LP22276.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5656238..5656571 2063..2396 100 <- Minus
3R 5656799..5657932 929..2062 100 <- Minus
3R 5658141..5658707 362..928 100 <- Minus
3R 5659535..5659895 1..361 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:10 Download gff for LP22276.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5656238..5656571 2063..2396 100 <- Minus
3R 5656799..5657932 929..2062 100 <- Minus
3R 5658141..5658707 362..928 100 <- Minus
3R 5659535..5659895 1..361 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:59 Download gff for LP22276.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1481960..1482293 2063..2396 100 <- Minus
arm_3R 1482521..1483654 929..2062 100 <- Minus
arm_3R 1483863..1484429 362..928 100 <- Minus
arm_3R 1485257..1485617 1..361 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:51:49 Download gff for LP22276.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5397069..5397402 2063..2396 100 <- Minus
3R 5397630..5398763 929..2062 100 <- Minus
3R 5398972..5399538 362..928 100 <- Minus
3R 5400366..5400726 1..361 100   Minus

LP22276.pep Sequence

Translation from 265 to 2280

> LP22276.pep
MARLTKVYNTDDDDSGYVGRRNLPLVAGDKLMMLMDLNSKGLVIDSPLIR
GRELEEFSRKFKLLTEAERRQSLEIDSASFMEVLNQCVQCVGCRRRVERL
FHQLTETGHRTLDPLELRPTATLGIVEEKLKTPQALGTLLYRHHEVLNNL
LDNKLRNKTRCVLHSLDAFRAKPFSETWREVWSAMKSNCRNELTIIETKE
LHDVLENYLKKHKFCSGCRTKIERAYKILIGEISSKEKGYAAQLYAHIRK
CVPDQHIHVTTNKIEFLDALIKRAEPEVNGSYSKLRERHAKTLEIAQEEV
LTCVGMIMYERLRRIYVSLREEERACQVLAAVGVHALCRSFDTFVEQKQG
ISNLELLYQEISRAERAKQIKREQKKLKKKKKKDEKKNLLHRQCDDTEAN
ESDEEEEELRNEELDLEEESQMQHEELSDPGADDGIVIEAARSPEPEPEL
TSKPTKSKPKKQSKKKKQKKAAFTKMGNQKQMQATARVQPLDADHDQLDV
ASCISSSIAKTVGDKCEECLASMPNCPCEQDVRDSGYGSDPPSHAGSRTS
SAISSPEGSEVSCSDGLCNHDVHDEDSDDLLFYSHQSQLDHKFSLLQMWD
DFDEYDDKDEETYYIPQEVVMAFKCHREQVQRKREELRAKLRANFERLCV
QHGVQTQVQKSKRTTSALVGQ*

LP22276.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17403-PA 675 GF17403-PA 1..674 1..670 2570 79.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10898-PA 670 GG10898-PA 1..670 1..671 3039 94 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19191-PA 706 GH19191-PA 1..685 1..656 2155 68.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2182-PA 671 CG2182-PA 1..671 1..671 3484 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24224-PA 676 GI24224-PA 1..675 1..667 2204 69 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23142-PA 690 GL23142-PA 1..678 1..657 2465 78 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27155-PB 692 GA27155-PB 1..680 1..657 2463 78.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10602-PA 670 GM10602-PA 1..670 1..671 3481 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19592-PA 670 GD19592-PA 1..670 1..671 3489 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10796-PA 665 GJ10796-PA 1..657 1..670 2297 71.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22775-PA 676 GK22775-PA 1..666 1..656 2243 72.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24149-PA 667 GE24149-PA 1..667 1..671 2973 94 Plus

LP22276.hyp Sequence

Translation from 265 to 2280

> LP22276.hyp
MARLTKVYNTDDDDSGYVGRRNLPLVAGDKLMMLMDLNSKGLVIDSPLIR
GRELEEFSRKFKLLTEAERRQSLEIDSASFMEVLNQCVQCVGCRRRVERL
FHQLTETGHRTLDPLELRPTATLGIVEEKLKTPQALGTLLYRHHEVLNNL
LDNKLRNKTRCVLHSLDAFRAKPFSETWREVWSAMKSNCRNELTIIETKE
LHDVLENYLKKHKFCSGCRTKIERAYKILIGEISSKEKGYAAQLYAHIRK
CVPDQHIHVTTNKIEFLDALIKRAEPEVNGSYSKLRERHAKTLEIAQEEV
LTCVGMIMYERLRRIYVSLREEERACQVLAAVGVHALCRSFDTFVEQKQG
ISNLELLYQEISRAERAKQIKREQKKLKKKKKKDEKKNLLHRQCDDTEAN
ESDEEEEELRNEELDLEEESQMQHEELSDPGADDGIVIEAARSPEPEPEL
TSKPTKSKPKKQSKKKKQKKAAFTKMGNQKQMQATARVQPLDADHDQLDV
ASCISSSIAKTVGDKCEECLASMPNCPCEQDVRDSGYGSDPPSHAGSRTS
SAISSPEGSEVSCSDGLCNHDVHDEDSDDLLFYSHQSQLDHKFSLLQMWD
DFDEYDDKDEETYYIPQEVVMAFKCHREQVQRKREELRAKLRANFERLCV
QHGVQTQVQKSKRTTSALVGQ*

LP22276.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2182-PA 671 CG2182-PA 1..671 1..671 3484 100 Plus