Clone LP22879 Report

Search the DGRC for LP22879

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:228
Well:79
Vector:pOT2
Associated Gene/TranscriptCG33514-RA
Protein status:LP22879.pep: gold
Sequenced Size:1164

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33514 2004-03-05 Blastp of sequenced clone
CG33514 2008-04-29 Release 5.5 accounting
CG33514 2008-08-15 Release 5.9 accounting
CG33514 2008-12-18 5.12 accounting

Clone Sequence Records

LP22879.complete Sequence

1164 bp (1164 high quality bases) assembled on 2004-03-05

GenBank Submission: BT012303

> LP22879.complete
ACTTCCTCCTGACCGCAAACGACCTAGAAATGTCACCGCAAATCCGTCCA
CTTACGCCAGAGCTGCAAAAAGTTGCCAAGGAGCAGCTCAAGGAGGATCC
CGAACGTCTCGAAGCCGATCTGCAGGCGTTTAAGACATGGATCGAGCAGC
AGCCGCATCTAAATCCCCGAATGGATGATCAGTTTCTGGTGGCTTTCTTG
CGCGGCTGCAAGTACAGTTTGGAGCGGGCCAAGTCCAAGTTAGATAAGTA
CTACACGCTGAAGACCAAGTATCCGGACTATTTCCGAGTTACCAACACCA
CGGATAGCAAGTTCCGGGAGATTCATCAAACGGGTGCCATCATCTACCTG
CCCACTCCGCTGAATGAAAATGGACCTCGCATCGGGATCTGGCGCATGGG
ATTGGTGCCAGTGGAGAAGTACACAATGCTGGAGTGCATGCAAGTGGCCC
AGGCAATGCAGGAGATTGCCATTTTGGAGGACGACTACGCCAATGTCAAT
GGAGTAGTTTTCATTATGGACATGAAGGGTGCCACCGCCGCACACTTGTT
CCAGATGACGCCGTCGATGGCCAAGAAATTCACTGTCTTCTCGGAGGAGG
CACTTCCACTGCGTCTGAAGGCACAGCATTTCATCAACACCATCACCGGA
TTCGAGCAGCTGTTCAACATGTTCAAGCCAATGATGTCCAAGAAAATGCA
GTCTCGCCTATTTGTGCACGGCAACAAAATGGGGCTCTTGACGGAGCAGA
TTCCACTGAAATATCTGCCCGAGGAATACGGCGGCGAGAATGGCACCACG
CAGGACATCGTGGCCGCCATGGAGAAGAAGTTGGACGAGTACGCCGATTT
CTTCCAGGAAAATGTGAACTTCGGCACCGACGAGAGCCTGCGTCCCGGAA
AACCAATCGATTTTGAGGGGCTTTTCGGAGTAGAAGGTTCCTTTAGAAAG
CTCAACGTGGACTAGTTTCAGTTTGTAACTTTAAAGATTTTATTTTCTTA
TCAGCCAGTTGAAAAAGTTGTCCAATTTAGTGGCTAGAAAACACATTCGC
ATCAGTTGAATTGTAAAATCCAATAGTAGGAATGATAATATAGGAATACA
TGAATATGCTACGATACTTCGCAGCAGTTTTAGGTTTCTCCTATATAAAA
AAAAAAAAAAAAAA

LP22879.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG33514-RA 1359 CG33514-RA 169..1317 1..1149 5745 100 Plus
CG11342-RA 965 CG11342-RA 785..965 1149..969 905 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4365241..4366053 334..1146 4035 99.8 Plus
chr3L 24539361 chr3L 4364849..4365182 1..334 1655 99.7 Plus
chr3L 24539361 chr3L 1233800..1233918 138..256 190 77.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:59:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4365859..4366674 334..1149 4080 100 Plus
3L 28110227 3L 4365467..4365800 1..334 1670 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4365859..4366674 334..1149 4080 100 Plus
3L 28103327 3L 4365467..4365800 1..334 1670 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:35:21 has no hits.

LP22879.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:36:02 Download gff for LP22879.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4364849..4365182 1..334 99 -> Plus
chr3L 4365242..4366053 335..1146 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:44:43 Download gff for LP22879.complete
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 1..936 30..965 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:39:08 Download gff for LP22879.complete
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 1..936 30..965 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:26:21 Download gff for LP22879.complete
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 1..936 30..965 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:22:53 Download gff for LP22879.complete
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 1..936 30..965 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:20 Download gff for LP22879.complete
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 1..936 30..965 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:47:22 Download gff for LP22879.complete
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 1..1117 30..1146 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:39:08 Download gff for LP22879.complete
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 1..1146 1..1146 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:26:21 Download gff for LP22879.complete
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 34..1179 1..1146 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:22:53 Download gff for LP22879.complete
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 1..1117 30..1146 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:20 Download gff for LP22879.complete
Subject Subject Range Query Range Percent Splice Strand
CG33514-RA 34..1179 1..1146 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:36:02 Download gff for LP22879.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4365467..4365800 1..334 100 -> Plus
3L 4365860..4366671 335..1146 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:36:02 Download gff for LP22879.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4365467..4365800 1..334 100 -> Plus
3L 4365860..4366671 335..1146 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:36:02 Download gff for LP22879.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4365467..4365800 1..334 100 -> Plus
3L 4365860..4366671 335..1146 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:26:21 Download gff for LP22879.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4365467..4365800 1..334 100 -> Plus
arm_3L 4365860..4366671 335..1146 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:00:18 Download gff for LP22879.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4365467..4365800 1..334 100 -> Plus
3L 4365860..4366671 335..1146 100   Plus

LP22879.hyp Sequence

Translation from 2 to 964

> LP22879.hyp
FLLTANDLEMSPQIRPLTPELQKVAKEQLKEDPERLEADLQAFKTWIEQQ
PHLNPRMDDQFLVAFLRGCKYSLERAKSKLDKYYTLKTKYPDYFRVTNTT
DSKFREIHQTGAIIYLPTPLNENGPRIGIWRMGLVPVEKYTMLECMQVAQ
AMQEIAILEDDYANVNGVVFIMDMKGATAAHLFQMTPSMAKKFTVFSEEA
LPLRLKAQHFINTITGFEQLFNMFKPMMSKKMQSRLFVHGNKMGLLTEQI
PLKYLPEEYGGENGTTQDIVAAMEKKLDEYADFFQENVNFGTDESLRPGK
PIDFEGLFGVEGSFRKLNVD*

LP22879.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG33514-PA 311 CG33514-PA 1..311 10..320 1626 100 Plus
CG33966-PA 310 CG33966-PA 2..310 12..320 916 55.3 Plus
CG12926-PA 313 CG12926-PA 6..313 11..320 706 45.2 Plus
CG30339-PA 308 CG30339-PA 4..308 14..320 644 42.3 Plus
CG31636-PB 313 CG31636-PB 4..313 14..320 612 40.5 Plus

LP22879.pep Sequence

Translation from 29 to 964

> LP22879.pep
MSPQIRPLTPELQKVAKEQLKEDPERLEADLQAFKTWIEQQPHLNPRMDD
QFLVAFLRGCKYSLERAKSKLDKYYTLKTKYPDYFRVTNTTDSKFREIHQ
TGAIIYLPTPLNENGPRIGIWRMGLVPVEKYTMLECMQVAQAMQEIAILE
DDYANVNGVVFIMDMKGATAAHLFQMTPSMAKKFTVFSEEALPLRLKAQH
FINTITGFEQLFNMFKPMMSKKMQSRLFVHGNKMGLLTEQIPLKYLPEEY
GGENGTTQDIVAAMEKKLDEYADFFQENVNFGTDESLRPGKPIDFEGLFG
VEGSFRKLNVD*

LP22879.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25066-PA 311 GF25066-PA 1..311 1..311 1414 81.7 Plus
Dana\GF24441-PA 310 GF24441-PA 2..310 3..311 928 55.7 Plus
Dana\GF25067-PA 187 GF25067-PA 1..187 125..311 860 83.4 Plus
Dana\GF12489-PA 311 GF12489-PA 6..311 4..311 724 45.8 Plus
Dana\GF12490-PA 308 GF12490-PA 3..308 4..311 673 44.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15223-PA 311 GG15223-PA 1..311 1..311 1588 94.9 Plus
Dere\GG14766-PA 324 GG14766-PA 16..324 3..311 932 54.7 Plus
Dere\GG25270-PA 313 GG25270-PA 6..313 2..311 736 45.5 Plus
Dere\GG25272-PA 308 GG25272-PA 4..308 5..311 655 42.7 Plus
Dere\GG23602-PA 313 GG23602-PA 4..313 5..311 637 40.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15199-PA 308 GH15199-PA 1..308 1..311 1102 65 Plus
Dgri\GH15439-PA 324 GH15439-PA 16..324 3..311 895 53.7 Plus
Dgri\GH14848-PA 311 GH14848-PA 2..311 3..311 795 46.1 Plus
Dgri\GH22856-PA 316 GH22856-PA 12..316 5..311 709 45.3 Plus
Dgri\GH13581-PA 314 GH13581-PA 3..314 2..311 664 42.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG33514-PA 311 CG33514-PA 1..311 1..311 1626 100 Plus
CG33966-PA 310 CG33966-PA 2..310 3..311 916 55.3 Plus
CG12926-PA 313 CG12926-PA 6..313 2..311 706 45.2 Plus
CG30339-PA 308 CG30339-PA 4..308 5..311 644 42.3 Plus
CG31636-PB 313 CG31636-PB 4..313 5..311 612 40.5 Plus
CG31636-PA 313 CG31636-PA 4..313 5..311 612 40.5 Plus
CG33965-PA 317 CG33965-PA 9..317 5..311 609 41 Plus
CG2663-PC 308 CG2663-PC 7..308 9..311 496 35.2 Plus
CG2663-PA 308 CG2663-PA 7..308 9..311 496 35.2 Plus
CG10301-PB 306 CG10301-PB 3..306 6..311 463 32.7 Plus
CG1902-PC 312 CG1902-PC 3..312 4..311 463 35 Plus
CG1902-PA 312 CG1902-PA 3..312 4..311 463 35 Plus
CG10300-PA 311 CG10300-PA 1..311 1..311 396 29.1 Plus
CG11550-PA 298 CG11550-PA 7..298 17..311 322 27.5 Plus
CG10657-PA 334 CG10657-PA 26..334 3..311 307 28.9 Plus
CG5973-PF 311 CG5973-PF 37..272 14..252 294 29.8 Plus
CG5973-PE 311 CG5973-PE 37..272 14..252 294 29.8 Plus
CG5973-PG 311 CG5973-PG 37..272 14..252 294 29.8 Plus
CG5973-PD 311 CG5973-PD 37..272 14..252 294 29.8 Plus
CG5973-PC 311 CG5973-PC 37..272 14..252 294 29.8 Plus
CG5973-PB 311 CG5973-PB 37..272 14..252 294 29.8 Plus
CG5973-PA 311 CG5973-PA 37..272 14..252 294 29.8 Plus
CG10237-PD 301 CG10237-PD 26..267 9..252 285 30.5 Plus
CG10237-PA 301 CG10237-PA 26..267 9..252 285 30.5 Plus
CG10237-PE 306 CG10237-PE 31..272 9..252 285 30.5 Plus
CG10237-PC 306 CG10237-PC 31..272 9..252 285 30.5 Plus
CG10237-PB 324 CG10237-PB 49..290 9..252 285 30.5 Plus
Cralbp-PA 324 CG10546-PA 11..324 8..311 284 25.5 Plus
CG5958-PA 294 CG5958-PA 18..260 8..252 265 28.5 Plus
CG10026-PD 290 CG10026-PD 19..255 12..252 263 28.2 Plus
CG10026-PC 290 CG10026-PC 19..255 12..252 263 28.2 Plus
CG10026-PA 290 CG10026-PA 19..255 12..252 263 28.2 Plus
CG10026-PB 299 CG10026-PB 28..264 12..252 263 28.2 Plus
pinta-PB 273 CG13848-PB 18..264 23..277 239 25.5 Plus
pinta-PA 273 CG13848-PA 18..264 23..277 239 25.5 Plus
CG3191-PC 309 CG3191-PC 16..288 13..277 225 24.5 Plus
CG3191-PA 309 CG3191-PA 16..288 13..277 225 24.5 Plus
CG3091-PC 303 CG3091-PC 32..286 37..277 223 23.4 Plus
CG3091-PA 303 CG3091-PA 32..286 37..277 223 23.4 Plus
CG3823-PA 295 CG3823-PA 7..295 21..311 215 21.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16717-PA 308 GI16717-PA 1..308 1..311 1162 67.5 Plus
Dmoj\GI13701-PA 312 GI13701-PA 1..312 1..311 820 48.4 Plus
Dmoj\GI21233-PA 313 GI21233-PA 9..313 5..311 717 46.6 Plus
Dmoj\GI13038-PA 318 GI13038-PA 10..318 5..311 656 41 Plus
Dmoj\GI21234-PA 308 GI21234-PA 3..308 4..311 653 41.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16163-PA 311 GL16163-PA 1..311 1..311 962 58.2 Plus
Dper\GL17330-PA 311 GL17330-PA 1..311 1..311 731 45.4 Plus
Dper\GL17331-PA 308 GL17331-PA 3..308 4..311 663 42.9 Plus
Dper\GL26205-PA 313 GL26205-PA 4..313 5..311 614 39.5 Plus
Dper\GL16161-PA 313 GL16161-PA 4..313 5..311 606 39.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28527-PA 311 GA28527-PA 1..311 1..311 1414 83 Plus
Dpse\GA28411-PA 311 GA28411-PA 1..311 1..311 962 58.2 Plus
Dpse\GA11913-PA 311 GA11913-PA 1..311 1..311 724 45 Plus
Dpse\GA15770-PA 308 GA15770-PA 3..308 4..311 667 42.9 Plus
Dpse\GA16352-PA 313 GA16352-PA 4..313 5..311 614 39.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14655-PA 311 GM14655-PA 1..311 1..311 1628 97.1 Plus
Dsec\GM14386-PA 290 GM14386-PA 2..290 3..311 849 52.8 Plus
Dsec\GM20588-PA 313 GM20588-PA 6..313 2..311 733 45.2 Plus
Dsec\GM20589-PA 308 GM20589-PA 4..308 5..311 652 41.7 Plus
Dsec\GM14385-PA 317 GM14385-PA 9..317 5..311 621 40.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13840-PA 311 GD13840-PA 1..311 1..311 1640 98.1 Plus
Dsim\GD10061-PA 308 GD10061-PA 4..308 5..311 649 41.7 Plus
Dsim\GD22558-PA 313 GD22558-PA 4..313 5..311 611 39.5 Plus
Dsim\GD13595-PA 169 GD13595-PA 1..169 143..311 537 58.6 Plus
Dsim\GD19620-PA 308 GD19620-PA 7..308 9..311 505 35.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12461-PA 308 GJ12461-PA 1..308 1..311 1158 67.2 Plus
Dvir\GJ12135-PA 310 GJ12135-PA 2..310 3..311 953 56.3 Plus
Dvir\GJ14041-PA 311 GJ14041-PA 2..311 3..311 766 46.1 Plus
Dvir\GJ20838-PA 316 GJ20838-PA 12..316 5..311 680 46.6 Plus
Dvir\GJ12134-PA 318 GJ12134-PA 6..318 1..311 661 40.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11682-PA 311 GK11682-PA 1..311 1..311 1324 76.2 Plus
Dwil\GK21135-PA 310 GK21135-PA 2..310 3..311 914 53.4 Plus
Dwil\GK15622-PA 313 GK15622-PA 6..313 2..311 717 44.5 Plus
Dwil\GK15623-PA 309 GK15623-PA 1..309 1..311 666 43.1 Plus
Dwil\GK21130-PA 318 GK21130-PA 5..318 2..311 632 40 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21443-PA 311 GE21443-PA 1..311 1..311 1589 94.9 Plus
Dyak\GE21129-PA 310 GE21129-PA 2..310 3..311 933 55.3 Plus
Dyak\GE22148-PA 313 GE22148-PA 6..313 2..311 737 45.8 Plus
Dyak\GE22159-PA 308 GE22159-PA 3..308 4..311 665 43.2 Plus
Dyak\GE18422-PA 313 GE18422-PA 4..313 5..311 647 41.8 Plus