Clone LP23833 Report

Search the DGRC for LP23833

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:238
Well:33
Vector:pOT2
Associated Gene/TranscriptCG10514-RA
Protein status:LP23833.pep: gold
Sequenced Size:1349

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10514 2003-01-01 Sim4 clustering to Release 3
CG10514 2004-06-20 Blastp of sequenced clone
CG10514 2008-04-29 Release 5.5 accounting
CG10514 2008-08-15 Release 5.9 accounting
CG10514 2008-12-18 5.12 accounting

Clone Sequence Records

LP23833.complete Sequence

1349 bp (1349 high quality bases) assembled on 2004-06-20

GenBank Submission: BT015243

> LP23833.complete
AACTAAACAAGATGGCAGCGGCACCCGAGTGGCTTACCCACGAATACATC
GAGCATGCACTTCGCTGCCACTACAAGGATGAAGGACTAACCATAACTCA
GCTGCAGATAAATCCCGCCCTGGGGCCTGGTGAAAACTACGGCGGAGTTC
TGACCCGTGCTCGAGTGGAGTTCACACTGTCTAACAAGGAGAAAAATGTG
CAGAACCTGATTGTAAAGACGGAAATCGATGATGATGAGTTGACCCAGGA
ACTGATGGCCCCATATGATATTTACAACCGCGAGATGACCATCTACCAGG
AAGTGCTGCCCAAATGCAGGGAGCTGCTTAATGAGATCGGAGATACTGAA
AGGATATTTCCCACGGCCATCTATGTGGATCGCGAGCGTATGGCCATTAT
CTTCGAAGATCTTTCTGTGGTGGGCTACGTAATGGCCGATCGAGTGCGTC
GCCTCAACGAGGAGCACACTCACCTCATCCTGCGCAAGTTGGCCAAATTC
CATGCCGCCACAGCGGTCTTGAACGAGCGACAAAGTGGATGCCTCGAAAG
TTACGATCGTGGTTTCTTTAATCGCTATACAAACGCCTACAGTGGCTACT
TTGTGGGTGGTCTGCTGGCCGCCGCTCGCTGGATGAGCAAGGTGCCCACG
TTGGCCCACTACGGAGAGAAGCTATTCGCTTTGGCTCCGCACTACATGGA
CATCGGCAGGGAGTGCTTTGCACCCACTCCGGGTCAAGTTAATGTTCTGG
CCCATGGCGATGTGTGGACCAACAATGTGATGTTCAAGTACGATCCGAAT
ACGGGACGACCCGTCGATGTGCTGCTCATTGACTTCCAGTACTCCTTCTG
GGGCTCCCCATGCATCGATCTCCATCACCTGTTCAATACTTCTCTAAAGG
AGCCACTGCGTAGAGATCAGCAGAACGGGCTCTTCCAGTTCTACCACAAG
ATATTCACTGAGACGTTAGAAAAGCTCAACTATCGTCAAAATCAGATTCC
CAGTTTGCATCAGTTTAAATTGGAGGTGGAGCAAAAGAGATTCTTTGCTT
TGCATTCTACGGTAGTGGTGCAGCCAGTTATGATTAGCCAGGATCCCACG
GATGCCTGTTTCAATGCCTTGATGAACGATGATGAGCGTGGCATTCGGTT
TAAGAACCGATTATATAACAACCCTACAGTTCAACAAAATTTACATTCCC
TGGTTCCCTTCTTCGATAGAAAGGGACTGCTGGAAGTTAACCAGACCTGT
TAAGAGATTATTAGGATATGTTTTATTGGGCTTCCACGTTTTATGTCTAT
AAGTTTAAATAATAATAAACAATCTCATTTTAAAAAAAAAAAAAAAAAA

LP23833.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10514-RA 1605 CG10514-RA 207..1540 1..1334 6670 100 Plus
CG10514.a 1605 CG10514.a 207..1540 1..1334 6670 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21101863..21102909 1047..1 5235 100 Minus
chr3R 27901430 chr3R 21101517..21101801 1331..1047 1425 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:59:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25278773..25279819 1047..1 5235 100 Minus
3R 32079331 3R 25278424..25278711 1334..1047 1440 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25019604..25020650 1047..1 5235 100 Minus
3R 31820162 3R 25019255..25019542 1334..1047 1440 100 Minus
Blast to na_te.dros performed on 2019-03-15 14:00:50 has no hits.

LP23833.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:01:59 Download gff for LP23833.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21101517..21101800 1048..1331 100 <- Minus
chr3R 21101863..21102909 1..1047 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:44:54 Download gff for LP23833.complete
Subject Subject Range Query Range Percent Splice Strand
CG10514-RA 1..1242 12..1253 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:35:51 Download gff for LP23833.complete
Subject Subject Range Query Range Percent Splice Strand
CG10514-RA 1..1242 12..1253 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:20:48 Download gff for LP23833.complete
Subject Subject Range Query Range Percent Splice Strand
CG10514-RA 1..1242 12..1253 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:19:41 Download gff for LP23833.complete
Subject Subject Range Query Range Percent Splice Strand
CG10514-RA 1..1242 12..1253 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:48:51 Download gff for LP23833.complete
Subject Subject Range Query Range Percent Splice Strand
CG10514-RA 1..1242 12..1253 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:42:44 Download gff for LP23833.complete
Subject Subject Range Query Range Percent Splice Strand
CG10514-RA 1..1331 1..1331 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:35:51 Download gff for LP23833.complete
Subject Subject Range Query Range Percent Splice Strand
CG10514-RA 1..1331 1..1331 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:20:48 Download gff for LP23833.complete
Subject Subject Range Query Range Percent Splice Strand
CG10514-RA 28..1358 1..1331 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:19:41 Download gff for LP23833.complete
Subject Subject Range Query Range Percent Splice Strand
CG10514-RA 1..1331 1..1331 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:48:51 Download gff for LP23833.complete
Subject Subject Range Query Range Percent Splice Strand
CG10514-RA 28..1358 1..1331 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:01:59 Download gff for LP23833.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25278427..25278710 1048..1331 100 <- Minus
3R 25278773..25279819 1..1047 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:01:59 Download gff for LP23833.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25278427..25278710 1048..1331 100 <- Minus
3R 25278773..25279819 1..1047 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:01:59 Download gff for LP23833.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25278427..25278710 1048..1331 100 <- Minus
3R 25278773..25279819 1..1047 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:20:48 Download gff for LP23833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21104149..21104432 1048..1331 100 <- Minus
arm_3R 21104495..21105541 1..1047 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:56:57 Download gff for LP23833.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25019258..25019541 1048..1331 100 <- Minus
3R 25019604..25020650 1..1047 100   Minus

LP23833.hyp Sequence

Translation from 2 to 1252

> LP23833.hyp
LNKMAAAPEWLTHEYIEHALRCHYKDEGLTITQLQINPALGPGENYGGVL
TRARVEFTLSNKEKNVQNLIVKTEIDDDELTQELMAPYDIYNREMTIYQE
VLPKCRELLNEIGDTERIFPTAIYVDRERMAIIFEDLSVVGYVMADRVRR
LNEEHTHLILRKLAKFHAATAVLNERQSGCLESYDRGFFNRYTNAYSGYF
VGGLLAAARWMSKVPTLAHYGEKLFALAPHYMDIGRECFAPTPGQVNVLA
HGDVWTNNVMFKYDPNTGRPVDVLLIDFQYSFWGSPCIDLHHLFNTSLKE
PLRRDQQNGLFQFYHKIFTETLEKLNYRQNQIPSLHQFKLEVEQKRFFAL
HSTVVVQPVMISQDPTDACFNALMNDDERGIRFKNRLYNNPTVQQNLHSL
VPFFDRKGLLEVNQTC*

LP23833.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10514-PA 413 CG10514-PA 1..413 4..416 2200 100 Plus
CG11892-PA 439 CG11892-PA 33..439 7..414 1089 50.5 Plus
CG11892-PB 439 CG11892-PB 33..439 7..414 1089 50.5 Plus
CG31380-PA 405 CG31380-PA 4..398 10..411 949 46.6 Plus
CG10513-PB 422 CG10513-PB 15..420 7..412 892 44.9 Plus

LP23833.pep Sequence

Translation from 11 to 1252

> LP23833.pep
MAAAPEWLTHEYIEHALRCHYKDEGLTITQLQINPALGPGENYGGVLTRA
RVEFTLSNKEKNVQNLIVKTEIDDDELTQELMAPYDIYNREMTIYQEVLP
KCRELLNEIGDTERIFPTAIYVDRERMAIIFEDLSVVGYVMADRVRRLNE
EHTHLILRKLAKFHAATAVLNERQSGCLESYDRGFFNRYTNAYSGYFVGG
LLAAARWMSKVPTLAHYGEKLFALAPHYMDIGRECFAPTPGQVNVLAHGD
VWTNNVMFKYDPNTGRPVDVLLIDFQYSFWGSPCIDLHHLFNTSLKEPLR
RDQQNGLFQFYHKIFTETLEKLNYRQNQIPSLHQFKLEVEQKRFFALHST
VVVQPVMISQDPTDACFNALMNDDERGIRFKNRLYNNPTVQQNLHSLVPF
FDRKGLLEVNQTC*

LP23833.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17429-PA 415 GF17429-PA 1..415 1..413 1961 86 Plus
Dana\GF17563-PA 437 GF17563-PA 31..437 4..411 1079 49.5 Plus
Dana\GF18230-PA 413 GF18230-PA 3..409 2..411 967 45.9 Plus
Dana\GF17430-PA 423 GF17430-PA 16..422 4..410 860 42.1 Plus
Dana\GF17561-PA 416 GF17561-PA 6..414 2..408 827 40.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12268-PA 413 GG12268-PA 1..413 1..413 2175 96.4 Plus
Dere\GG11391-PA 439 GG11391-PA 33..439 4..411 1053 49.8 Plus
Dere\GG12215-PA 405 GG12215-PA 3..398 6..408 915 45.2 Plus
Dere\GG11390-PA 433 GG11390-PA 25..431 4..408 820 40.8 Plus
Dere\GG11387-PA 417 GG11387-PA 9..415 4..408 819 40.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14813-PA 415 GH14813-PA 1..415 1..413 1760 77.6 Plus
Dgri\GH17368-PA 435 GH17368-PA 30..435 4..411 1027 47.8 Plus
Dgri\GH14835-PA 412 GH14835-PA 17..410 4..409 826 40.4 Plus
Dgri\GH14824-PA 419 GH14824-PA 11..417 3..408 768 39.8 Plus
Dgri\GH14015-PA 413 GH14015-PA 7..411 5..408 618 35 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10514-PA 413 CG10514-PA 1..413 1..413 2200 100 Plus
CG11892-PA 439 CG11892-PA 33..439 4..411 1089 50.5 Plus
CG11892-PB 439 CG11892-PB 33..439 4..411 1089 50.5 Plus
CG31380-PA 405 CG31380-PA 4..398 7..408 949 46.6 Plus
CG10513-PB 422 CG10513-PB 15..420 4..409 892 44.9 Plus
CG11878-PA 420 CG11878-PA 12..418 4..408 816 41.1 Plus
CG11889-PB 417 CG11889-PB 9..415 4..408 797 39.6 Plus
CG11889-PA 417 CG11889-PA 9..415 4..408 797 39.6 Plus
CG11891-PI 417 CG11891-PI 13..416 5..409 776 38.7 Plus
CG11891-PH 417 CG11891-PH 13..416 5..409 776 38.7 Plus
CG33301-PB 407 CG33301-PB 3..406 5..409 666 37.3 Plus
CG33301-PA 407 CG33301-PA 3..406 5..409 666 37.3 Plus
CG16898-PA 407 CG16898-PA 3..406 5..409 622 34.6 Plus
CG6834-PA 895 CG6834-PA 62..470 5..408 436 29.1 Plus
CG31098-PA 417 CG31098-PA 10..416 4..408 426 28 Plus
CG31102-PA 416 CG31102-PA 17..415 5..408 425 27.1 Plus
CG31102-PB 420 CG31102-PB 17..419 5..408 422 26.9 Plus
CG13360-PA 421 CG13360-PA 15..421 5..408 411 27.8 Plus
CG9497-PB 417 CG9497-PB 10..417 1..408 406 29.2 Plus
CG9497-PA 417 CG9497-PA 10..417 1..408 406 29.2 Plus
CG6830-PA 891 CG6830-PA 47..457 5..410 396 26.7 Plus
CG13659-PA 417 CG13659-PA 14..415 5..408 393 26.6 Plus
CG6830-PA 891 CG6830-PA 483..883 5..408 388 24.8 Plus
CHKov1-PE 410 CG10618-PE 7..410 5..410 381 28.5 Plus
CG10560-PA 414 CG10560-PA 18..414 5..408 381 24.9 Plus
CG10562-PA 405 CG10562-PA 7..405 5..409 379 28.7 Plus
CG10550-PD 425 CG10550-PD 20..425 5..410 363 26 Plus
CG10550-PC 425 CG10550-PC 20..425 5..410 363 26 Plus
CG10550-PB 425 CG10550-PB 20..425 5..410 363 26 Plus
CG6908-PB 415 CG6908-PB 14..415 5..411 362 26.3 Plus
CG6908-PA 449 CG6908-PA 48..449 5..411 362 26.3 Plus
CG32195-PC 401 CG32195-PC 9..399 11..408 359 27.3 Plus
CG32195-PB 401 CG32195-PB 9..399 11..408 359 27.3 Plus
CG32195-PA 401 CG32195-PA 9..399 11..408 359 27.3 Plus
CG13658-PB 422 CG13658-PB 17..342 4..325 359 31.9 Plus
CG31300-PA 422 CG31300-PA 17..417 4..405 358 26 Plus
CG31288-PA 428 CG31288-PA 17..421 5..407 358 25 Plus
CG10553-PA 414 CG10553-PA 18..414 5..408 354 24.6 Plus
CG9498-PA 424 CG9498-PA 11..393 3..383 353 28.6 Plus
CG31370-PB 396 CG31370-PB 13..338 5..339 352 29.5 Plus
CG31097-PB 420 CG31097-PB 13..414 5..406 348 25.8 Plus
CG31104-PA 420 CG31104-PA 15..393 4..379 348 25.8 Plus
CG31087-PB 417 CG31087-PB 18..416 5..409 347 26.7 Plus
CG31087-PA 417 CG31087-PA 18..416 5..409 347 26.7 Plus
CG6834-PA 895 CG6834-PA 526..894 36..408 343 25.9 Plus
CG10559-PB 415 CG10559-PB 8..414 2..408 343 21.4 Plus
CG11893-PA 416 CG11893-PA 17..398 4..391 339 26.8 Plus
CG31436-PA 420 CG31436-PA 18..391 5..376 336 26.7 Plus
CG7135-PA 417 CG7135-PA 9..391 5..384 335 27.5 Plus
CHKov2-PA 409 CG10675-PA 7..408 5..407 325 24.3 Plus
CG31099-PA 400 CG31099-PA 7..399 5..407 267 23.3 Plus
CG31975-PC 416 CG31975-PC 36..379 39..375 224 23.3 Plus
CG31975-PB 416 CG31975-PB 36..379 39..375 224 23.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23684-PA 415 GI23684-PA 1..415 1..413 1779 77.3 Plus
Dmoj\GI23906-PA 404 GI23906-PA 27..404 1..411 920 44 Plus
Dmoj\GI23685-PA 381 GI23685-PA 14..379 3..408 666 35.5 Plus
Dmoj\GI24387-PA 389 GI24387-PA 7..387 5..408 555 33 Plus
Dmoj\GI23912-PA 422 GI23912-PA 15..372 4..357 477 31.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22106-PA 415 GL22106-PA 1..413 1..411 1866 82.3 Plus
Dper\GL21714-PA 439 GL21714-PA 33..439 4..411 1067 48.8 Plus
Dper\GL22295-PA 424 GL22295-PA 8..410 7..411 1034 48.5 Plus
Dper\GL22107-PA 426 GL22107-PA 19..424 4..409 876 43.1 Plus
Dper\GL21713-PA 420 GL21713-PA 12..418 4..408 799 37.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10365-PA 415 GA10365-PA 1..413 1..411 1860 82.1 Plus
Dpse\GA11263-PA 439 GA11263-PA 33..439 4..411 1071 49 Plus
Dpse\GA16220-PA 424 GA16220-PA 8..410 7..411 1038 48.8 Plus
Dpse\GA10364-PA 426 GA10364-PA 19..424 4..409 868 42.6 Plus
Dpse\GA11254-PA 420 GA11254-PA 12..418 4..408 806 38.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17734-PA 413 GM17734-PA 1..413 1..413 2212 98.5 Plus
Dsec\GM17834-PA 439 GM17834-PA 33..439 4..411 1063 50.2 Plus
Dsec\GM10216-PA 405 GM10216-PA 1..398 1..408 923 45.6 Plus
Dsec\GM17833-PA 420 GM17833-PA 12..418 4..408 836 41.3 Plus
Dsec\GM17735-PA 400 GM17735-PA 15..398 4..409 811 43.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18216-PA 413 GD18216-PA 1..413 1..413 2220 98.8 Plus
Dsim\GD18167-PA 405 GD18167-PA 1..398 1..408 936 47.1 Plus
Dsim\GD18217-PA 439 GD18217-PA 32..437 4..409 896 44.4 Plus
Dsim\GD21203-PA 319 GD21203-PA 1..319 92..411 851 50.3 Plus
Dsim\GD21199-PA 417 GD21199-PA 9..415 4..408 828 39.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23244-PA 415 GJ23244-PA 1..415 1..413 1745 78.1 Plus
Dvir\GJ24002-PA 435 GJ24002-PA 30..435 4..411 1072 50.7 Plus
Dvir\GJ23247-PA 428 GJ23247-PA 21..426 4..409 825 40.7 Plus
Dvir\GJ23245-PA 396 GJ23245-PA 11..394 3..408 687 35.5 Plus
Dvir\GJ14244-PA 390 GJ14244-PA 7..388 5..408 541 33.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14341-PA 415 GK14341-PA 1..415 1..413 1872 82.7 Plus
Dwil\GK14342-PA 420 GK14342-PA 3..413 1..409 1686 74.7 Plus
Dwil\GK12928-PA 436 GK12928-PA 29..436 3..411 1049 48.4 Plus
Dwil\GK14388-PA 405 GK14388-PA 1..403 1..411 947 44.3 Plus
Dwil\GK14343-PA 424 GK14343-PA 15..422 3..409 874 42.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10717-PA 413 GE10717-PA 1..413 1..413 2153 95.4 Plus
Dyak\GE10662-PA 405 GE10662-PA 3..398 6..408 936 46.4 Plus
Dyak\GE10718-PA 439 GE10718-PA 32..437 4..409 913 44.9 Plus
Dyak\GE23588-PA 421 GE23588-PA 12..421 4..411 861 42.5 Plus
Dyak\GE23586-PA 417 GE23586-PA 9..415 4..408 820 40.2 Plus