Clone LP23835 Report

Search the DGRC for LP23835

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:238
Well:35
Vector:pOT2
Associated Gene/TranscriptBrca2-RA
Protein status:LP23835.pep: gold
Sequenced Size:3226

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30169 2003-01-01 Sim4 clustering to Release 3
CG30169 2008-04-29 Release 5.5 accounting
CG30169 2008-08-15 Release 5.9 accounting
CG30169 2008-12-18 5.12 accounting

Clone Sequence Records

LP23835.complete Sequence

3226 bp (3226 high quality bases) assembled on 2005-08-05

GenBank Submission: BT023811

> LP23835.complete
CTTCAATAAAACACATTTAAACAATTAGATGACGTGATGGACCAGAATGG
CGCATCGGGAAGTCATCCGAACAGGCTATCCCAAGGAAGAGGAGCCCATG
CGCGCGAACGTGGCGCCACAGTTTCCGCGGCGGCAAATCGGAGTAACATT
ATCGACGAAATGGCCAAAATATGCGAAGCCGATCGCCAGACTTTCGCCAT
CGCTCGACGGACTCGGGGTCACGAGCGGCTTGCGGTGGACAACAGCGACT
TCGTCGCCGTGGAGGATCTTATTTTGTCCTACGCAGAGCCCACGCCCGAG
GACCAGGTCGAGATGATCATGAGCGACTTTTGCTCGTCTCCAACATACGC
AGAGGATGAGGATGAGCCCAGCCATGAGTCGGAGCCGTGGTTTCGATTTC
GCAACAAAAGGATCAGAACCTACAGCCGGAAGAGGGATCCCAAAAGCCAC
AAGGCCGTTCAAAACGAGAAGCGTAGAGGTTCCTCAGGCCTCTCCGTGCA
GAGGGATCTCAATACTTCGTTCACATCTATGGCTTGTGATTTCGATGCTT
CATCACAGAAGATACACGAGGTCCTTTTGAACCTCAGTCAATACTTTTCC
GCGACCGCGACAGCTTCCGGTCCGACTCCTGTCCCATCGCAAATAGATCT
GCCAACCGAAGCAAGGCAGGATTCTGGTGACGAGTGTTTCAACGCTGAAT
TGGAGAACTTGAGGGATGACCTGTTGCAGAGCGGATTTACATTTGAGGCC
TCTTTCTATGAAAATGAGCATGAGCAGGAAGGTCCAGGAACTATGGCAGA
CACTATTTATGGCGATAGCATGCAATCGGTTCCCACTACGCGCCTCCGAT
TGGAAAGTGGAAAACGTAATGTTTGGTCTGATGCAGACTCTACATTGAAA
AAAGCTGATGTCGAAATTGCTGAAAATAAGAAACTTTTGATGGGCCAAAC
GCAAGCAAAAAATGTTGACATAGAGGAGAACACAAACTTCATATTAGAAG
GCATACCACTAAGTGAATGGCTAACTCCGATGGAACTGCCCGAGATCTCC
AAAGATGTAATCAAACATATACCCGATAAAAAGTTAAAGTTGGAGCCAAG
TTCCCAGAAAGAACAAAAAAGTAGCAAAGATTCAAATGCATCAAAGGTTA
GAGGAGCCTCAAAACAATCTTGTGATATTAACACGAAAAACGAAGGAACT
ACTATTCTGGATCAGCCTAATGCTGCAGAGCAAGAAAACCTATTGAACGA
CGGCGAGCTTCTTGAGGAGTTTCTTTTTAATGATTGGCAACCAATGCAGT
GCTCTAATGGCCCATCAACCTCCAAAAACGCAATTCAAGGGCCTAAAGAA
AACATCAATTCAATAAATCTGGACGACAAGGAGCAACCAGAAAAGCAGAC
TCCTAATAAAAGTCAGACCATAAGCAGTCATCAACTTAATGGCATTCGAA
AGAAGTCCTTCAAATTTATCGAGGTTTCGGAAGAAATGAAAATTAAAGGC
GAAGAGTTTGTAGACAAAGTTGTATCCGGCCTATATCACTTTAGTCACAA
GTGCAACTTACGTACTGAGGAATACTCCGATAATCATAGTCAAGTAATGG
AATCAACACAGTGTGCGGAATTCAAATCAGCCCCAAGCAAGCCCATCGAA
ATATTGGATGGTAAGGAAACCTACAATGCAATAGCTAAAGTTGACGTTGG
AGAAATAAATGGAAAATTCAGTCCTCTCAATAACGATACTATAGCAGAGC
CCGAGTTTTGTGGCTTTCGCACAGCCTCAAATAAGGCAATTCCGATTTCT
GAGAAGATGAAAATCAAAACTGCAGAGTTTATGGCTGAGTTTCAATCCAA
AGAAACAATTCAACAAAATGATTATTTAGTCCATCAGCCAAATGACAAAC
CGACGTCTGTTGGACTTGATACAGCCTTAAAAAGATCAATAGAGAGTTCA
GAGGAAATGCGATCGAAAGCTTCCAAGTTGGTGGTCGTTGATACTACAAT
GCGGGAACCGCATCAACCCACACTTGACCCAGTTTGCCGTGACTTAAATG
AATCACAGTTTTTCGGCTTTAGAACAGCGTCAAACAAAGCCATTGAGATT
ACCGAGGCGATGGAGAAGAGAGGAGCCATGTTTCTGGCCCAGTCTAAAGC
TACAGACCAATTAAACGGGTGGCAGCCAAGCGATTTTCCTGATGTTCTAC
CCACCTCTCCAAACAATGAGATTCATTCAATAAATGTTGAAAATAATAAG
GCTGTGAATACTAAAACCGTATCTGAGACCGAATTCTTCGGCTTTCGTAC
CGCTTCAAATAAAGGAATTGTGATTTCGGAAAATACGAAAATCAAAGTTG
CACAGTTCATGAGTGAATTTCAAGCCGCCGATGCAAGCACTGACTCGAAC
CAACCAACTGTGATCTCTGAGGAATCGAGAAATATTGATGCCAAGTTCGT
AGATGAAGCGGCGGCAGAAGACAGTGCCAACAAGCCAACTTTTTGCAATG
TACAAAGTCTAAAAAATACCTCAGATATTGAGCATTTCAAACACGACTTC
TTCGTGGAGCATTCTGCAAAGGAAGAGCATCCGCTGTGTAGCCAGCCATT
GGTGAGGACACCCAGAAGGTCGCAGGAGATCCACTCCTCACTATCGCAAC
TTGCCGGCAAATCACCACTGGACCAGGCCACCAAGAAGTCCGTAATAGCT
CGCCGGAACCTCCTGTCACTAAAAAGAAAGCGAAAGATCATTTTGTCAAC
TGAAACTTCCACTTCCTGCGCCTTACCCACTATGGAGCGATTCGCTCCCA
AGCCTTCCTCGACAAGTACTCCGCTGGCCGACAGGGACTTAAATCGCTCC
AAGGACTGTACAAAGAATAGACAGGATGCGGAGGACATGTCCCCTATTTG
CATGCAACCCAAAAAGAGTCGAAGACTTGGTCTGAGTCGAAGTCGCTATT
AGTACACATTAAGTAAGCGTTGCTTTATACCCAAAATATTTAAACCGCTG
GCCGATTTGAAATGGGTAGAGATTTAGTTGAATTAATTAAGGTATGCCAT
TAGTGGTCTCATCATGACAGATTGAATAATTGTATAAGTTATCATAATAA
GCGTTTTTTGTTAAGTGCACCTTATAAGGAAATAAACGATCCGATAAGGG
CCACCCGCTAACCAACTTCCTTAAAGGTGCCCACTTACGAGTTCCGCGAA
AAAAAAAAAAAAAAAAAAAAAAAAAA

LP23835.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
Brca2-RA 3383 Brca2-RA 173..3373 5..3205 16005 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20413152..20415496 853..3198 11575 99.7 Plus
chr2R 21145070 chr2R 20412185..20412963 5..783 3880 99.9 Plus
chr2R 21145070 chr2R 20413020..20413093 780..853 370 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:59:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24527236..24529588 853..3205 11765 100 Plus
2R 25286936 2R 24526269..24527047 5..783 3895 100 Plus
2R 25286936 2R 24527104..24527177 780..853 370 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24528435..24530787 853..3205 11765 100 Plus
2R 25260384 2R 24527468..24528246 5..783 3895 100 Plus
2R 25260384 2R 24528303..24528376 780..853 370 100 Plus
Blast to na_te.dros performed 2019-03-16 11:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 6269..6356 1811..1900 129 64.8 Plus

LP23835.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:48:11 Download gff for LP23835.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20412180..20412961 1..781 99 -> Plus
chr2R 20413022..20413093 782..853 100 -> Plus
chr2R 20413153..20415496 854..3198 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:44:55 Download gff for LP23835.complete
Subject Subject Range Query Range Percent Splice Strand
CG30169-RA 1..2916 37..2952 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:55:22 Download gff for LP23835.complete
Subject Subject Range Query Range Percent Splice Strand
Brca2-RA 1..2916 37..2952 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:19:03 Download gff for LP23835.complete
Subject Subject Range Query Range Percent Splice Strand
Brca2-RA 1..2916 37..2952 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:36:02 Download gff for LP23835.complete
Subject Subject Range Query Range Percent Splice Strand
CG30169-RA 1..2916 37..2952 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:32 Download gff for LP23835.complete
Subject Subject Range Query Range Percent Splice Strand
Brca2-RA 1..2916 37..2952 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:31:36 Download gff for LP23835.complete
Subject Subject Range Query Range Percent Splice Strand
CG30169-RA 65..3263 1..3198 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:55:21 Download gff for LP23835.complete
Subject Subject Range Query Range Percent Splice Strand
Brca2-RA 65..3263 1..3198 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:19:03 Download gff for LP23835.complete
Subject Subject Range Query Range Percent Splice Strand
Brca2-RA 93..3291 1..3198 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:36:03 Download gff for LP23835.complete
Subject Subject Range Query Range Percent Splice Strand
CG30169-RA 65..3263 1..3198 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:32 Download gff for LP23835.complete
Subject Subject Range Query Range Percent Splice Strand
Brca2-RA 93..3291 1..3198 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:11 Download gff for LP23835.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24526264..24527045 1..781 99 -> Plus
2R 24527106..24527177 782..853 100 -> Plus
2R 24527237..24529581 854..3198 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:11 Download gff for LP23835.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24526264..24527045 1..781 99 -> Plus
2R 24527106..24527177 782..853 100 -> Plus
2R 24527237..24529581 854..3198 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:11 Download gff for LP23835.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24526264..24527045 1..781 99 -> Plus
2R 24527106..24527177 782..853 100 -> Plus
2R 24527237..24529581 854..3198 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:19:03 Download gff for LP23835.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20413787..20414568 1..781 99 -> Plus
arm_2R 20414629..20414700 782..853 100 -> Plus
arm_2R 20414760..20417104 854..3198 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:14:38 Download gff for LP23835.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24527481..24528262 1..781 99 -> Plus
2R 24528323..24528394 782..853 100 -> Plus
2R 24528454..24530798 854..3198 100   Plus

LP23835.pep Sequence

Translation from 36 to 2951

> LP23835.pep
MDQNGASGSHPNRLSQGRGAHARERGATVSAAANRSNIIDEMAKICEADR
QTFAIARRTRGHERLAVDNSDFVAVEDLILSYAEPTPEDQVEMIMSDFCS
SPTYAEDEDEPSHESEPWFRFRNKRIRTYSRKRDPKSHKAVQNEKRRGSS
GLSVQRDLNTSFTSMACDFDASSQKIHEVLLNLSQYFSATATASGPTPVP
SQIDLPTEARQDSGDECFNAELENLRDDLLQSGFTFEASFYENEHEQEGP
GTMADTIYGDSMQSVPTTRLRLESGKRNVWSDADSTLKKADVEIAENKKL
LMGQTQAKNVDIEENTNFILEGIPLSEWLTPMELPEISKDVIKHIPDKKL
KLEPSSQKEQKSSKDSNASKVRGASKQSCDINTKNEGTTILDQPNAAEQE
NLLNDGELLEEFLFNDWQPMQCSNGPSTSKNAIQGPKENINSINLDDKEQ
PEKQTPNKSQTISSHQLNGIRKKSFKFIEVSEEMKIKGEEFVDKVVSGLY
HFSHKCNLRTEEYSDNHSQVMESTQCAEFKSAPSKPIEILDGKETYNAIA
KVDVGEINGKFSPLNNDTIAEPEFCGFRTASNKAIPISEKMKIKTAEFMA
EFQSKETIQQNDYLVHQPNDKPTSVGLDTALKRSIESSEEMRSKASKLVV
VDTTMREPHQPTLDPVCRDLNESQFFGFRTASNKAIEITEAMEKRGAMFL
AQSKATDQLNGWQPSDFPDVLPTSPNNEIHSINVENNKAVNTKTVSETEF
FGFRTASNKGIVISENTKIKVAQFMSEFQAADASTDSNQPTVISEESRNI
DAKFVDEAAAEDSANKPTFCNVQSLKNTSDIEHFKHDFFVEHSAKEEHPL
CSQPLVRTPRRSQEIHSSLSQLAGKSPLDQATKKSVIARRNLLSLKRKRK
IILSTETSTSCALPTMERFAPKPSSTSTPLADRDLNRSKDCTKNRQDAED
MSPICMQPKKSRRLGLSRSRY*

LP23835.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13624-PA 475 GF13624-PA 40..266 37..239 385 42 Plus
Dana\GF13624-PA 475 GF13624-PA 356..475 851..971 321 55.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22975-PA 934 GG22975-PA 1..921 1..958 2956 62.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19997-PA 796 GH19997-PA 385..789 576..970 297 29.4 Plus
Dgri\GH19997-PA 796 GH19997-PA 18..354 7..335 220 30.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
Brca2-PA 971 CG30169-PA 1..971 1..971 4997 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19177-PA 374 GI19177-PA 60..367 678..970 229 29.3 Plus
Dmoj\GI16962-PA 307 GI16962-PA 118..240 91..205 206 44.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20217-PA 1243 GL20217-PA 49..816 38..805 656 30.4 Plus
Dper\GL20217-PA 1243 GL20217-PA 1132..1243 858..971 273 50.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Brca2-PB 1264 GA15693-PB 44..892 38..805 661 30.4 Plus
Dpse\Brca2-PB 1264 GA15693-PB 1153..1264 858..971 272 50.4 Plus
Dpse\Brca2-PB 1264 GA15693-PB 759..1008 469..705 174 30.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11870-PA 938 GM11870-PA 1..938 1..971 4092 81.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11868-PA 944 GD11868-PA 1..944 1..971 4167 82.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20238-PA 955 GJ20238-PA 111..719 76..701 290 26.1 Plus
Dvir\GJ20238-PA 955 GJ20238-PA 579..948 617..970 270 29.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14413-PA 926 GE14413-PA 1..926 1..971 2775 59.4 Plus

LP23835.hyp Sequence

Translation from 36 to 2951

> LP23835.hyp
MDQNGASGSHPNRLSQGRGAHARERGATVSAAANRSNIIDEMAKICEADR
QTFAIARRTRGHERLAVDNSDFVAVEDLILSYAEPTPEDQVEMIMSDFCS
SPTYAEDEDEPSHESEPWFRFRNKRIRTYSRKRDPKSHKAVQNEKRRGSS
GLSVQRDLNTSFTSMACDFDASSQKIHEVLLNLSQYFSATATASGPTPVP
SQIDLPTEARQDSGDECFNAELENLRDDLLQSGFTFEASFYENEHEQEGP
GTMADTIYGDSMQSVPTTRLRLESGKRNVWSDADSTLKKADVEIAENKKL
LMGQTQAKNVDIEENTNFILEGIPLSEWLTPMELPEISKDVIKHIPDKKL
KLEPSSQKEQKSSKDSNASKVRGASKQSCDINTKNEGTTILDQPNAAEQE
NLLNDGELLEEFLFNDWQPMQCSNGPSTSKNAIQGPKENINSINLDDKEQ
PEKQTPNKSQTISSHQLNGIRKKSFKFIEVSEEMKIKGEEFVDKVVSGLY
HFSHKCNLRTEEYSDNHSQVMESTQCAEFKSAPSKPIEILDGKETYNAIA
KVDVGEINGKFSPLNNDTIAEPEFCGFRTASNKAIPISEKMKIKTAEFMA
EFQSKETIQQNDYLVHQPNDKPTSVGLDTALKRSIESSEEMRSKASKLVV
VDTTMREPHQPTLDPVCRDLNESQFFGFRTASNKAIEITEAMEKRGAMFL
AQSKATDQLNGWQPSDFPDVLPTSPNNEIHSINVENNKAVNTKTVSETEF
FGFRTASNKGIVISENTKIKVAQFMSEFQAADASTDSNQPTVISEESRNI
DAKFVDEAAAEDSANKPTFCNVQSLKNTSDIEHFKHDFFVEHSAKEEHPL
CSQPLVRTPRRSQEIHSSLSQLAGKSPLDQATKKSVIARRNLLSLKRKRK
IILSTETSTSCALPTMERFAPKPSSTSTPLADRDLNRSKDCTKNRQDAED
MSPICMQPKKSRRLGLSRSRY*

LP23835.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
Brca2-PA 971 CG30169-PA 1..971 1..971 4997 100 Plus