Clone LP24076 Report

Search the DGRC for LP24076

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:240
Well:76
Vector:pOT2
Associated Gene/TranscriptCG10869-RA
Protein status:LP24076.pep: gold
Sequenced Size:2245

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10869 2003-01-01 Sim4 clustering to Release 3
CG10869 2008-04-29 Release 5.5 accounting
CG10869 2008-08-15 Release 5.9 accounting
CG10869 2008-12-18 5.12 accounting

Clone Sequence Records

LP24076.complete Sequence

2245 bp (2245 high quality bases) assembled on 2004-12-02

GenBank Submission: BT021337

> LP24076.complete
CTCGTTCGGTTCAGTTCACATTTGGTTTACTCTGCATTTTCGATATTGCT
TTACATTTGTGGCTCAAAAATTTGTCAAATATTTCGCAGGAACTGCCACT
AAATTCGAGCACTTTTACACGAAATGACTTTTACGTATAAGGAACTCATA
GATGTTGCCATTGGGTCCCCGGAATCAGGACACGTTAACTTTTACGCTTT
GCATGTCCTGCTCACGTGCTTTGCCCAGCGATTGGAGGTCCTCGATGAGG
TTGTCGAGCAGGAAGACTATATGGTGGCCAATGTGCGCTTGCAAAGCAGT
TTACTGACCTTGGGTAACACCTCGAAGTTCCGTCTTTTCGCCGGTGCGGA
TGCCGAGGAGGGAGCAGCAGCCGAGCCGGCGGCAGAGCCCCCAGCCGAGG
AGGCAGAGGCACCCCCTGCGCCAGTCGAAGAGCCTCCCGCAGCGGATCCA
GCACCAGAGCCTGCTCCAGAACCTGCTCCAGAGCCTGCTGCAGAGGAACC
TGCCCCAGCGGAGCCAGTCCCAGAAGAAGCAGCTCCTGCGGAGGCTGCCG
CACCATCTCCAGAACCAGTGGGTTCCAACCATGAACCAACTCCATCTGCA
ACTCCGGCTCCCGAGGAACATCCTCCTTCTGAGCCCGAGGCAGATACCTC
AAAAGCACCAATGGATGTGCCTGCCGAGGCCAAGGGAGAGGAGCTGGCAC
CGCAGGCCTCACGGGTCTCCTCGAGATCCTCCGGTCGCGACAAGTCGCAC
AGTCAAACGGACGGATCTCTTACCAATAATCTCTTGCGTCTCGAAAGACG
CCTCTCCAAGATTGAACTGCAGAAGGAACAGGCCACAATGGAGGTTCAGC
AGTTTGTGAGCAATCTCACCAGCCAGCTGAAGATCACGATGGAGCAGGTG
AACAATATGACCCACTTGTTGATCGATCGCAAGCCGAACCCGCAGAGGTT
TCGGTTACTCCGTCACATAGCCAAGCAGTTGAGGGTCCTGATGGTGACGA
CTGGTGATGAGGTTTCTGTGAGTTGGTCGAGTGGGGATATAGTGGACGGT
GTCGAAGAGGAGGGCCTGTCAGAGGAGGAGGTCCCAGTGGAGTCTAGTGC
GCCCACGGAGGTGGAGAAGCCTGAGGAAGAGGAGGAACTTGAATTGGAAC
AGCCCCTTTGCTATTCGCCGGAGAAAATGCTTACTGAGCTTCTAGACCTC
AAGTCGCAATTCTGTGCTCTGACCAACAAGGTAAATGAACTCGCTGCAGC
CTTGCTGAAACAGGACTCCCAGAGACTGATGGACCAGATGAAGGATCTCT
CGGAAACGGTGCGGGATATTAAGCTCTACATGGCCAGCAACAAGGAGGCT
ACCAATGGCATGATGACTCGCCTCAATGACTGCGTATACCAGATACAAGT
CCTAAAGAAATCGGCATCCCATTTGGATGAGGTGAAGATTGACAAGACGG
AGGTGGAGCTTTTGTTGGCCGAAAAGGTTGACTTCCAGCAGTTGGCCACT
AAAGTGTCCCTGGAGCAACTGGAGGAGTACAAGGCCAGGTTGGAGCAGAT
GTTCTGCGAGGTGCGCCACATTGTGAGCTTGAACGAGAAGAACGTCCTGC
AGATCATCGACAATCTGCGAATGACACTGGGCATCGACGCATTGGAGCTA
AGTCTCAAGGACTTCCGGGAGATGATCGAGCGGCGGGTGCAGATTATAGC
CGAGGCCCTCCAGAAGTACATGGAGATGACCAACGATGATTGTGCCGCAG
CTGCCGGAAGAGTGAAGGTCATGCAGGATCTGGCCTGCTTGGCCTGTGAC
ACCACCTGTGTAATGCGAACTGTGGAGCGATCCAAGGTGCCCTCGCTGCC
CAATGCTAAGGGTTCCACCGGCCTGGGTCCCATTGTCACCTACGAACTGG
GCCAGATCCGCAAGTCGGGCATCATGGGATACTATCGCAAGGACGAGTTC
CCACACTCCACCAGTGCCTGGACTAAAGGAGCCTCGGGTGTTCCCATGGT
CAAGTGCACTCCGCGTCACGCGGGCGGAAGTCACACCACCCACACCGCGG
ATGAGCACATGCAGAAGGTCATTCTGTCAAAGAAGACCAGCGGTTGGACA
TAGGAGGGACTACTGCAGCTAATAGATTGTAGCTATTGTAGTTATATAAT
CGTTGTTTTGGGCTACTAGACAAAATTATAGATTTTCTGTATGTTATCCG
TCTGAAAATATATTTTTCTTTGGAAATAAAAAAAAAAAAAAAAAA

LP24076.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10869-RA 2353 CG10869-RA 111..2339 1..2229 11145 100 Plus
CG10869-RB 748 CG10869-RB 2..424 1..423 2115 100 Plus
CG10869-RB 748 CG10869-RB 425..748 1906..2229 1620 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1584766..1586688 2227..305 9615 100 Minus
chr2L 23010047 chr2L 1586752..1587055 304..1 1520 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:59:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1584864..1586788 2229..305 9625 100 Minus
2L 23513712 2L 1586852..1587155 304..1 1520 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1584864..1586788 2229..305 9625 100 Minus
2L 23513712 2L 1586852..1587155 304..1 1520 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:16:35 has no hits.

LP24076.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:17:32 Download gff for LP24076.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1584766..1586688 305..2227 97 <- Minus
chr2L 1586752..1587055 1..304 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:45:01 Download gff for LP24076.complete
Subject Subject Range Query Range Percent Splice Strand
CG10869-RA 1..1980 124..2103 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:46:53 Download gff for LP24076.complete
Subject Subject Range Query Range Percent Splice Strand
CG10869-RA 1..1980 124..2103 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:58:31 Download gff for LP24076.complete
Subject Subject Range Query Range Percent Splice Strand
CG10869-RA 1..1980 124..2103 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:27:54 Download gff for LP24076.complete
Subject Subject Range Query Range Percent Splice Strand
CG10869-RA 1..1980 124..2103 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:32:05 Download gff for LP24076.complete
Subject Subject Range Query Range Percent Splice Strand
CG10869-RA 1..1980 124..2103 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:56:06 Download gff for LP24076.complete
Subject Subject Range Query Range Percent Splice Strand
CG10869-RA 1..2227 1..2227 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:46:52 Download gff for LP24076.complete
Subject Subject Range Query Range Percent Splice Strand
CG10869-RA 1..2227 1..2227 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:31 Download gff for LP24076.complete
Subject Subject Range Query Range Percent Splice Strand
CG10869-RA 1..2227 1..2227 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:27:54 Download gff for LP24076.complete
Subject Subject Range Query Range Percent Splice Strand
CG10869-RA 1..2227 1..2227 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:32:05 Download gff for LP24076.complete
Subject Subject Range Query Range Percent Splice Strand
CG10869-RA 1..2227 1..2227 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:32 Download gff for LP24076.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1584866..1586788 305..2227 100 <- Minus
2L 1586852..1587155 1..304 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:32 Download gff for LP24076.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1584866..1586788 305..2227 100 <- Minus
2L 1586852..1587155 1..304 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:32 Download gff for LP24076.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1584866..1586788 305..2227 100 <- Minus
2L 1586852..1587155 1..304 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:31 Download gff for LP24076.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1584866..1586788 305..2227 100 <- Minus
arm_2L 1586852..1587155 1..304 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:02:14 Download gff for LP24076.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1584866..1586788 305..2227 100 <- Minus
2L 1586852..1587155 1..304 100   Minus

LP24076.hyp Sequence

Translation from 123 to 2102

> LP24076.hyp
MTFTYKELIDVAIGSPESGHVNFYALHVLLTCFAQRLEVLDEVVEQEDYM
VANVRLQSSLLTLGNTSKFRLFAGADAEEGAAAEPAAEPPAEEAEAPPAP
VEEPPAADPAPEPAPEPAPEPAAEEPAPAEPVPEEAAPAEAAAPSPEPVG
SNHEPTPSATPAPEEHPPSEPEADTSKAPMDVPAEAKGEELAPQASRVSS
RSSGRDKSHSQTDGSLTNNLLRLERRLSKIELQKEQATMEVQQFVSNLTS
QLKITMEQVNNMTHLLIDRKPNPQRFRLLRHIAKQLRVLMVTTGDEVSVS
WSSGDIVDGVEEEGLSEEEVPVESSAPTEVEKPEEEEELELEQPLCYSPE
KMLTELLDLKSQFCALTNKVNELAAALLKQDSQRLMDQMKDLSETVRDIK
LYMASNKEATNGMMTRLNDCVYQIQVLKKSASHLDEVKIDKTEVELLLAE
KVDFQQLATKVSLEQLEEYKARLEQMFCEVRHIVSLNEKNVLQIIDNLRM
TLGIDALELSLKDFREMIERRVQIIAEALQKYMEMTNDDCAAAAGRVKVM
QDLACLACDTTCVMRTVERSKVPSLPNAKGSTGLGPIVTYELGQIRKSGI
MGYYRKDEFPHSTSAWTKGASGVPMVKCTPRHAGGSHTTHTADEHMQKVI
LSKKTSGWT*

LP24076.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10869-PA 659 CG10869-PA 1..659 1..659 3355 100 Plus
CG10014-PA 421 CG10014-PA 335..418 78..155 184 52.4 Plus
CG18130-PA 706 CG18130-PA 597..705 75..192 173 44.6 Plus
CG5514-PC 1109 CG5514-PC 374..499 77..195 164 36.8 Plus
CG5514-PA 1109 CG5514-PA 374..499 77..195 164 36.8 Plus
CG10014-PA 421 CG10014-PA 322..419 70..173 160 46.7 Plus

LP24076.pep Sequence

Translation from 123 to 2102

> LP24076.pep
MTFTYKELIDVAIGSPESGHVNFYALHVLLTCFAQRLEVLDEVVEQEDYM
VANVRLQSSLLTLGNTSKFRLFAGADAEEGAAAEPAAEPPAEEAEAPPAP
VEEPPAADPAPEPAPEPAPEPAAEEPAPAEPVPEEAAPAEAAAPSPEPVG
SNHEPTPSATPAPEEHPPSEPEADTSKAPMDVPAEAKGEELAPQASRVSS
RSSGRDKSHSQTDGSLTNNLLRLERRLSKIELQKEQATMEVQQFVSNLTS
QLKITMEQVNNMTHLLIDRKPNPQRFRLLRHIAKQLRVLMVTTGDEVSVS
WSSGDIVDGVEEEGLSEEEVPVESSAPTEVEKPEEEEELELEQPLCYSPE
KMLTELLDLKSQFCALTNKVNELAAALLKQDSQRLMDQMKDLSETVRDIK
LYMASNKEATNGMMTRLNDCVYQIQVLKKSASHLDEVKIDKTEVELLLAE
KVDFQQLATKVSLEQLEEYKARLEQMFCEVRHIVSLNEKNVLQIIDNLRM
TLGIDALELSLKDFREMIERRVQIIAEALQKYMEMTNDDCAAAAGRVKVM
QDLACLACDTTCVMRTVERSKVPSLPNAKGSTGLGPIVTYELGQIRKSGI
MGYYRKDEFPHSTSAWTKGASGVPMVKCTPRHAGGSHTTHTADEHMQKVI
LSKKTSGWT*

LP24076.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14038-PA 645 GF14038-PA 171..644 181..658 1904 79.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24585-PA 662 GG24585-PA 146..662 142..659 2232 91.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10475-PA 647 GH10475-PA 2..646 1..658 1778 57.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10869-PA 659 CG10869-PA 1..659 1..659 3355 100 Plus
CG10014-PA 421 CG10014-PA 335..418 78..155 184 52.4 Plus
CG18130-PA 706 CG18130-PA 597..705 75..192 173 44.6 Plus
BOD1-PC 1109 CG5514-PC 374..499 77..195 164 36.8 Plus
BOD1-PA 1109 CG5514-PA 374..499 77..195 164 36.8 Plus
nahoda-PC 1148 CG12781-PC 430..580 77..213 164 35.5 Plus
BOD1-PD 1150 CG5514-PD 374..499 77..195 164 36.8 Plus
BOD1-PB 1150 CG5514-PB 374..499 77..195 164 36.8 Plus
BOD1-PE 1151 CG5514-PE 374..499 77..195 164 36.8 Plus
nahoda-PB 1335 CG12781-PB 430..580 77..213 164 35.5 Plus
nahoda-PA 1335 CG12781-PA 430..580 77..213 164 35.5 Plus
CG10014-PA 421 CG10014-PA 322..419 70..173 160 46.7 Plus
CG15021-PA 420 CG15021-PA 240..342 80..183 159 32.7 Plus
Argk-PA 562 CG32031-PA 40..136 75..183 159 38.6 Plus
Bap111-PA 749 CG7055-PA 328..434 78..187 158 38.2 Plus
CG10953-PB 278 CG10953-PB 143..241 85..193 154 39.1 Plus
CG10953-PA 278 CG10953-PA 143..241 85..193 154 39.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15938-PA 629 GI15938-PA 168..629 195..659 1635 66.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19526-PA 659 GL19526-PA 194..658 196..658 1825 75.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10610-PA 663 GA10610-PA 198..662 196..658 1821 74.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16604-PA 659 GM16604-PA 1..659 1..659 3447 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22904-PA 658 GD22904-PA 1..658 1..659 3426 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10412-PA 641 GJ10412-PA 1..640 1..658 1959 62.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21234-PA 657 GK21234-PA 1..657 1..659 2050 64.4 Plus
Dwil\GK18356-PA 657 GK18356-PA 1..657 1..659 2050 64.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15544-PA 662 GE15544-PA 146..662 139..659 2258 90.2 Plus