MIP01063.complete Sequence
371 bp assembled on 2009-04-06
GenBank Submission: BT081974.1
> MIP01063.complete
ATCAGCAAGTTCAACAAGCTTCTAAGACTCGGAATTACTGCAGTAAATAA
ACAAAAAACAAATCAACAAGATGCCTTGCAAGGGATGTGGAAACAACTGC
CAGTGCTCAGCCGGAAAGTGCGGAGGTAACTGCGCCGGAAACAGCCAATG
CCAATGCGCCGCCAAGACGGGAGCCAAGTGCTGCCAGGCCAAGTGATGGC
CGGATCCATTTGGATTAGGTTAAATAGTCTCTAATAGTTGTTACAAACCC
CTGCCTGACGCTGAATAAAACCCATTATAATGTTGTGCTTATCTTAATTT
AATATTACTATTAATTATTGCGAAATGTTGCACTTTAAATCCTTCCAAAA
AAAAAAAAAAAAAAAAAAAAA
MIP01063.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:29:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DMG8-chr3R.29.007.a | 701 | DMG8-chr3R.29.007.a | 261..611 | 1..351 | 1725 | 99.4 | Plus |
DMG8-chr3R.29.007.b | 559 | DMG8-chr3R.29.007.b | 261..559 | 1..299 | 1480 | 99.6 | Plus |
MtnB-RA | 584 | MtnB-RA | 212..289 | 66..143 | 195 | 83.3 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 16358195..16358443 | 344..96 | 1245 | 100 | Minus |
chr3R | 27901430 | chr3R | 16358524..16358618 | 95..1 | 460 | 98.9 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:59:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20534274..20534529 | 351..96 | 1265 | 99.6 | Minus |
3R | 32079331 | 3R | 20534610..20534704 | 95..1 | 460 | 98.9 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 20275105..20275360 | 351..96 | 1265 | 99.6 | Minus |
3R | 31820162 | 3R | 20275441..20275535 | 95..1 | 460 | 98.9 | Minus |
Blast to na_te.dros performed 2019-03-15 17:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 1860..1927 | 272..339 | 124 | 64.7 | Plus |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 9742..9809 | 272..339 | 124 | 64.7 | Plus |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 627..684 | 42..101 | 114 | 70 | Plus |
Doc2-element | 4789 | Doc2-element DOC2 4789bp | 778..816 | 28..66 | 114 | 76.9 | Plus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 2210..2257 | 11..58 | 105 | 68.8 | Plus |
MIP01063.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:15:40 Download gff for
MIP01063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 16358193..16358443 | 96..346 | 99 | <- | Minus |
chr3R | 16358524..16358618 | 1..95 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2009-10-19 18:08:47 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:43:57 Download gff for
MIP01063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42872-RA | 1..126 | 71..196 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:29:33 Download gff for
MIP01063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnE-RA | 1..126 | 71..196 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:30:21 Download gff for
MIP01063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnE-RB | 1..126 | 71..196 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed on 2009-04-06 18:09:48 has no hits.
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:43:57 Download gff for
MIP01063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42872-RA | 1..346 | 1..346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:29:33 Download gff for
MIP01063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnE-RA | 1..346 | 1..346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:30:21 Download gff for
MIP01063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnE-RB | 1..346 | 1..346 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:15:40 Download gff for
MIP01063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20534279..20534529 | 96..346 | 99 | <- | Minus |
3R | 20534610..20534704 | 1..95 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:15:40 Download gff for
MIP01063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20534279..20534529 | 96..346 | 99 | <- | Minus |
3R | 20534610..20534704 | 1..95 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:15:40 Download gff for
MIP01063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20534279..20534529 | 96..346 | 99 | <- | Minus |
3R | 20534610..20534704 | 1..95 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:29:33 Download gff for
MIP01063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16360332..16360426 | 1..95 | 98 | | Minus |
arm_3R | 16360001..16360251 | 96..346 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:19:00 Download gff for
MIP01063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20275110..20275360 | 96..346 | 99 | <- | Minus |
3R | 20275441..20275535 | 1..95 | 98 | | Minus |
MIP01063.hyp Sequence
Translation from 0 to 128
> MIP01063.hyp
ISKFNKLLRLGITAVNKQKTNQQDALQGMWKQLPVLSRKVRR*
Sequence MIP01063.hyp has no blast hits.
MIP01063.pep Sequence
Translation from 70 to 195
> MIP01063.pep
MPCKGCGNNCQCSAGKCGGNCAGNSQCQCAAKTGAKCCQAK*
MIP01063.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MtnE-PA | 41 | CG42872-PA | 1..41 | 1..41 | 250 | 100 | Plus |
MtnE-PB | 41 | CG42872-PB | 1..41 | 1..41 | 250 | 100 | Plus |
MtnB-PC | 43 | CG4312-PC | 1..43 | 1..41 | 160 | 65.1 | Plus |
MtnB-PB | 43 | CG4312-PB | 1..43 | 1..41 | 160 | 65.1 | Plus |
MtnB-PA | 43 | CG4312-PA | 1..43 | 1..41 | 160 | 65.1 | Plus |
MtnD-PB | 44 | CG33192-PB | 1..43 | 1..41 | 157 | 62.8 | Plus |
MtnC-PA | 43 | CG5097-PA | 1..43 | 1..41 | 146 | 55.8 | Plus |