Clone MIP01093 Report

Search the DGRC for MIP01093

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:10
Well:93
Vector:pOTB7_DraIII
Associated Gene/TranscriptCG17169-RB
Protein status:MIP01093.pep: gold
Sequenced Size:560

Clone Sequence Records

MIP01093.complete Sequence

560 bp assembled on 2009-04-06

GenBank Submission: BT081975.1

> MIP01093.complete
ATTTGATTGTTAACACGATGCGATGGCAGTTGGCAATTATGTGGCTTTTC
GCCTCCGCGTTTGCAGTACCTTTCATAAAGTGGCGCCGCCAAATAGTTAC
GCCGAAGCACTTGATGGCACCACCTTTGTCACCCATCGCACAGGACAAGG
TTGTGGTCACCCCGCAGAAGCTTAGAGAAGTGGCTGACTTTAAGGCCATG
ATCCAAAAGGCCGTCGATGAGAACACTTACGTGGTGGCCGCTGCACCATC
AAAGGATTTTCTAGCGACACTGGGTGGAAATTGGGGAGCACCTATATCCT
TGCCTCACTCCTGGACCGCGCCAGCCTTTAATCTTACCTTTTTTTGGCAT
GGATTTGGCTAACAACATGCAAGAAATTTTATCAAATTCGTAGCTCATAC
TCGTAGTAAGTATTAGCATTAGCGATCGAAGAGGTGCGGCAATCGCATAA
GCTTCGAGCCGGGCCTTTTAAGGAACTGCAAGACGAGAGATCAAATGCGA
CCTCTGATTAATAAAGTCAAGCAGTAACTAGCAAAAAAAAAAAAAAAAAA
AAAAAAAAAA

MIP01093.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17169-RB 701 CG17169-RB 29..558 1..530 2620 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
chrXHet 204175 chrXHet 64132..64409 253..530 1375 99.6 Plus
chrXHet 204175 chrXHet 63547..63801 1..255 1260 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:00:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23085257..23085534 253..530 1375 99.6 Plus
X 23542271 X 23084672..23084926 1..255 1260 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 23070349..23070626 253..530 1375 99.6 Plus
X 23527363 X 23069764..23070018 1..255 1260 99.6 Plus
Blast to na_te.dros performed on 2019-03-16 17:32:52 has no hits.

MIP01093.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:33:47 Download gff for MIP01093.complete
Subject Subject Range Query Range Percent Splice Strand
chrXHet 64134..64411 255..532 99   Plus
chrXHet 63547..63800 1..254 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2009-10-19 18:08:48 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:43:58 Download gff for MIP01093.complete
Subject Subject Range Query Range Percent Splice Strand
CG17169-RB 1..345 18..362 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:35:16 Download gff for MIP01093.complete
Subject Subject Range Query Range Percent Splice Strand
CG17169-RB 1..345 18..362 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:01:18 Download gff for MIP01093.complete
Subject Subject Range Query Range Percent Splice Strand
CG17169-RB 1..345 18..362 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed on 2009-04-06 18:32:56 has no hits.
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:43:58 Download gff for MIP01093.complete
Subject Subject Range Query Range Percent Splice Strand
CG17169-RB 1..532 1..532 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:16 Download gff for MIP01093.complete
Subject Subject Range Query Range Percent Splice Strand
CG17169-RB 1..532 1..532 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:01:18 Download gff for MIP01093.complete
Subject Subject Range Query Range Percent Splice Strand
CG17169-RB 1..532 1..532 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:33:47 Download gff for MIP01093.complete
Subject Subject Range Query Range Percent Splice Strand
X 23084672..23084925 1..254 99 -> Plus
X 23085259..23085536 255..532 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:33:47 Download gff for MIP01093.complete
Subject Subject Range Query Range Percent Splice Strand
X 23084672..23084925 1..254 99 -> Plus
X 23085259..23085536 255..532 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:33:47 Download gff for MIP01093.complete
Subject Subject Range Query Range Percent Splice Strand
X 23084672..23084925 1..254 99 -> Plus
X 23085259..23085536 255..532 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:16 Download gff for MIP01093.complete
Subject Subject Range Query Range Percent Splice Strand
XHet 63490..63743 1..254 99 -> Plus
XHet 64077..64354 255..532 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:19:01 Download gff for MIP01093.complete
Subject Subject Range Query Range Percent Splice Strand
X 23069764..23070017 1..254 99 -> Plus
X 23070351..23070628 255..532 99   Plus

MIP01093.hyp Sequence

Translation from 2 to 361

> MIP01093.hyp
LIVNTMRWQLAIMWLFASAFAVPFIKWRRQIVTPKHLMAPPLSPIAQDKV
VVTPQKLREVADFKAMIQKAVDENTYVVAAAPSKDFLATLGGNWGAPISL
PHSWTAPAFNLTFFWHGFG*

MIP01093.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17169-PB 114 CG17169-PB 1..114 6..119 613 100 Plus

MIP01093.pep Sequence

Translation from 2 to 361

> MIP01093.pep
LIVNTMRWQLAIMWLFASAFAVPFIKWRRQIVTPKHLMAPPLSPIAQDKV
VVTPQKLREVADFKAMIQKAVDENTYVVAAAPSKDFLATLGGNWGAPISL
PHSWTAPAFNLTFFWHGFG*

MIP01093.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22146-PA 108 GF22146-PA 1..108 6..119 246 47.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17169-PB 114 CG17169-PB 1..114 6..119 613 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21566-PA 144 GI21566-PA 28..93 26..91 164 58.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27542-PA 122 GA27542-PA 1..122 6..119 179 38.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13281-PA 87 GM13281-PA 1..79 6..84 369 92.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15470-PA 163 GD15470-PA 1..58 38..108 222 68.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16692-PA 150 GJ16692-PA 11..92 10..91 177 51.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15241-PA 80 GE15241-PA 1..80 6..85 375 88.8 Plus