Clone MIP02662 Report

Search the DGRC for MIP02662

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:26
Well:62
Vector:pOT2
Associated Gene/TranscriptCG13887-RD
Protein status:MIP02662.pep: gold
Sequenced Size:1311

Clone Sequence Records

MIP02662.complete Sequence

1311 bp assembled on 2009-01-13

GenBank Submission: BT058028.1

> MIP02662.complete
CCGGCGCAGTGACTACATAAAATATACGCATATTTCATCACGGCAGCGAT
TTAATTATTGCTATTTAAAGCGGCAGTCGAAAAAAGCGAAAATCCAAGAA
GCGAAAATCGAACGAAAAAGGGAATTAATAAAACATTAAAAATGAGTTTG
GTGTGGACTTTGATCGCCGGATTTCTCTATGCGGAAATCGCACTGGTCCT
TCTGCTGGTGCTGCCGGTGCTCACTCCTTACCGCTGGAACCGGTTCTTCA
AGTCCAAATTCCTATCGATGTTGGGACAACAGGCGCACATATATTTCCTG
CTGATCATGGGAATTCTGGTCATTTTCCTCCTGGAGGCCATTCGCGAGAT
GCGCAAGTACTCCGGCTTGCAGCAGTCTAACGAGGTCCACTTGAACGTGG
AGATGCAGCACAGCATGAAGCTGTTCCGTGCCCAGCGGAACTTCTACATC
TCTGGATTCGCCATTTTCCTTGCCCTGGTCATCCGGCGACTGGTAAACTT
GATCTGCACCCAGGCCAATCTCATGGCCCAGAGCGAGGCTTCCTTCAAGC
AGGCACAGAGCGCCACTGCAGCCGCACGTTCCTTGCTGGAGAACAAGAAC
ACCGAGAAGGCCAAGGAAGCCGGCGAGGATACCACTCTCATCGAGCTGTC
AAGACTGCGGAGACGTGTGCAAGGACTCACCGCCCGAGTGTCCTAAGTAT
CCCCACCTAGAGCACCCACCTTATATCCATTCCCAAACACCCAAAACGAA
CAAAAATCCAATCGAAACTCAAACGAAATCCGAATTTTGCAGCTCAACAA
GCTGCGCGAGCGCGTCCAGGAGCTAACCTCCGACTTGAATCGCGAAAAGA
AGGACAAGGAGGCGGTTAAGTCGCAGGCGGAGAGCATCAACCGCGAGTAC
GACCGACTCACCGAGGAGTACAGCAAGCTGCAGAAGAAGATAACCATCGG
CGGAGGCGGAAACAAGGATGATTAAACTCACTGGAGCCAAGTCCAACATT
TAAATAACGATAAGACTTATAAGCATGGCGGTGGGGCAGCGAAAGCAGGC
ACATTTAAAAGATTATAACGATTTCAAATCGATAGAAAGCACACACATCT
TATTGTTAATCCTCATAGATACAACTACATATACCATTTGATAATGATAA
TGGGGTATATTGATAATGGTCCCTCAACTCAATGTTCGTTTCGTCCGAAG
TTTTGTATTTAATTCGTATGTGTTAAGTTTTGTTTGCCACAGTAACACAC
CCAAAAAGCGTCGTGGCTATTAAAAGAACAACCAAAAAGTAAAAAAAAAA
AAAAAAAAAAA

MIP02662.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887.a 1304 CG13887.a 22..1304 1..1283 6415 100 Plus
CG13887.d 1406 CG13887.d 193..1406 70..1283 6070 100 Plus
CG13887-RB 1483 CG13887-RB 226..803 70..647 2890 100 Plus
CG13887-RB 1483 CG13887-RB 800..1300 791..1291 2505 100 Plus
CG13887.d 1406 CG13887.d 21..90 1..70 350 100 Plus
CG13887-RB 1483 CG13887-RB 54..123 1..70 350 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 838886..839532 644..1290 3220 99.8 Plus
chr3L 24539361 chr3L 837831..838409 70..645 2815 99.5 Plus
chr3L 24539361 chr3L 837659..837728 1..70 350 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:00:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 839101..839748 644..1291 3240 100 Plus
3L 28110227 3L 838049..838624 70..645 2880 100 Plus
3L 28110227 3L 837877..837946 1..70 350 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 839101..839748 644..1291 3240 100 Plus
3L 28103327 3L 838049..838624 70..645 2880 100 Plus
3L 28103327 3L 837877..837946 1..70 350 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:43:55 has no hits.

MIP02662.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:45:02 Download gff for MIP02662.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 837659..837727 1..69 100 -> Plus
chr3L 837831..838409 70..645 99 -> Plus
chr3L 838888..839532 646..1290 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:50:23 Download gff for MIP02662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RB 1..522 142..662 99 == Plus
CG13887-RB 523..687 811..975 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:28:00 Download gff for MIP02662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RD 1..555 142..696 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:56:31 Download gff for MIP02662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RD 1..555 142..696 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:42:23 Download gff for MIP02662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RD 1..555 142..696 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-01-13 12:12:18 Download gff for MIP02662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RC 22..684 1..662 99 == Plus
CG13887-RC 685..1164 811..1290 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:28:00 Download gff for MIP02662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RD 21..1310 1..1290 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:31 Download gff for MIP02662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RD 17..1306 1..1290 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:23 Download gff for MIP02662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RD 17..1306 1..1290 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:45:02 Download gff for MIP02662.complete
Subject Subject Range Query Range Percent Splice Strand
3L 837877..837945 1..69 100 -> Plus
3L 838049..838624 70..645 100 -> Plus
3L 839103..839747 646..1290 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:45:02 Download gff for MIP02662.complete
Subject Subject Range Query Range Percent Splice Strand
3L 837877..837945 1..69 100 -> Plus
3L 838049..838624 70..645 100 -> Plus
3L 839103..839747 646..1290 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:45:02 Download gff for MIP02662.complete
Subject Subject Range Query Range Percent Splice Strand
3L 837877..837945 1..69 100 -> Plus
3L 838049..838624 70..645 100 -> Plus
3L 839103..839747 646..1290 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:31 Download gff for MIP02662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 837877..837945 1..69 100 -> Plus
arm_3L 838049..838624 70..645 100 -> Plus
arm_3L 839103..839747 646..1290 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:00:43 Download gff for MIP02662.complete
Subject Subject Range Query Range Percent Splice Strand
3L 838049..838624 70..645 100 -> Plus
3L 839103..839747 646..1290 100   Plus
3L 837877..837945 1..69 100 -> Plus

MIP02662.pep Sequence

Translation from 141 to 695

> MIP02662.pep
MSLVWTLIAGFLYAEIALVLLLVLPVLTPYRWNRFFKSKFLSMLGQQAHI
YFLLIMGILVIFLLEAIREMRKYSGLQQSNEVHLNVEMQHSMKLFRAQRN
FYISGFAIFLALVIRRLVNLICTQANLMAQSEASFKQAQSATAAARSLLE
NKNTEKAKEAGEDTTLIELSRLRRRVQGLTARVS*

MIP02662.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24779-PA 232 GF24779-PA 1..184 1..184 763 81.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14739-PA 228 GG14739-PA 1..184 1..184 832 88 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15423-PA 229 GH15423-PA 1..183 1..184 683 74.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-PD 184 CG13887-PD 1..184 1..184 901 100 Plus
CG13887-PE 228 CG13887-PE 1..181 1..181 866 97.2 Plus
CG13887-PB 228 CG13887-PB 1..181 1..181 866 97.2 Plus
CG13887-PC 228 CG13887-PC 1..181 1..181 866 97.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13024-PA 231 GI13024-PA 1..183 1..184 750 77.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16285-PA 231 GL16285-PA 1..184 1..184 773 82.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12600-PA 231 GA12600-PA 1..184 1..184 772 82.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14356-PA 228 GM14356-PA 1..184 1..184 914 95.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13575-PA 228 GD13575-PA 1..184 1..184 914 95.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12120-PA 230 GJ12120-PA 1..183 1..184 755 78.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10890-PA 228 GK10890-PA 1..183 1..184 731 79.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21102-PA 228 GE21102-PA 1..184 1..184 841 84.8 Plus

MIP02662.hyp Sequence

Translation from 141 to 695

> MIP02662.hyp
MSLVWTLIAGFLYAEIALVLLLVLPVLTPYRWNRFFKSKFLSMLGQQAHI
YFLLIMGILVIFLLEAIREMRKYSGLQQSNEVHLNVEMQHSMKLFRAQRN
FYISGFAIFLALVIRRLVNLICTQANLMAQSEASFKQAQSATAAARSLLE
NKNTEKAKEAGEDTTLIELSRLRRRVQGLTARVS*

MIP02662.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-PD 184 CG13887-PD 1..184 1..184 901 100 Plus
CG13887-PE 228 CG13887-PE 1..181 1..181 866 97.2 Plus
CG13887-PB 228 CG13887-PB 1..181 1..181 866 97.2 Plus
CG13887-PC 228 CG13887-PC 1..181 1..181 866 97.2 Plus