Clone MIP02753 Report

Search the DGRC for MIP02753

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:27
Well:53
Vector:pOT2
Associated Gene/TranscriptCG42692-RB
Protein status:MIP02753.pep: gold
Sequenced Size:623

Clone Sequence Records

MIP02753.complete Sequence

623 bp assembled on 2009-01-12

GenBank Submission: BT056294.1

> MIP02753.complete
CTCGAATTATTGCTTTAAATTTTGCTAGTAATTGGTCTTAAATTTACAAT
AATGAATAAAGAAGCAACGAAAAGGCGGCGCCAGAGGTGCACCGAATCAC
TCAAGGATATATTGTCAAATCTGCGCATTCGTAACAGAAAGGCCTGGTTC
AATTATGTAGACAAGACTAAATCGCCACATATAAGAAATTTGTTGGCCAA
AGAATCGTATAAAAAATTAAAAAATGCTTCCAAAACTTCAGGTAAGGAAA
AAAGAAAGATTGAAAAATTGCAACGTTCTTTAAAAAAAATGATGAAGCAA
GAGTTACAAAAACAGGTGATTTACCTAAAGAATATTTGGGTGTCCTTAGC
ACATGTCCTTGCACTACTTTTCGATCAAGGACCTATTGAGCAAATCAGCA
GCCTGGTATTCACTATATTCACTATAACTAAATCTTTGGTAGTTGGCATT
AAGTATAAAACCAAAATGGAAGATTTCGCCGAGCATCACAGCGAATGAAG
GCTAATCTGCACATTCTATTCGAAATCAGAAGTTTATATATATATTTGTT
TGTATTTTGTCGTAATAGCTTGCTATGTTTATTATACAAAGAATAAAATA
TTAATAAAAAAAAAAAAAAAAAA

MIP02753.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
MB8.chr2L.pasa.9.a 767 MB8.chr2L.pasa.9.a 149..761 3..615 3065 100 Plus
MB8.chr2L.pasa.17.a 561 MB8.chr2L.pasa.17.a 274..561 300..587 1440 100 Plus
MB8.chr2L.pasa.17.a 561 MB8.chr2L.pasa.17.a 37..275 3..241 1195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 14007133..14007568 170..605 2180 100 Plus
chr2L 23010047 chr2L 14006909..14007075 3..169 775 97.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:01:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14008364..14008809 170..615 2230 100 Plus
2L 23513712 2L 14008140..14008306 3..169 835 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14008364..14008809 170..615 2230 100 Plus
2L 23513712 2L 14008140..14008306 3..169 835 100 Plus
Blast to na_te.dros performed 2019-03-15 14:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 3862..3935 604..533 121 68 Minus
Tabor 7345 Tabor TABOR 7345bp 6756..6802 560..514 118 72.3 Minus
Dbuz\BuT5 669 Dbuz\BuT5 BUT5 669bp 493..557 243..178 111 65.2 Minus

MIP02753.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:54:11 Download gff for MIP02753.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 14006905..14007075 1..169 96 -> Plus
chr2L 14007133..14007553 170..590 100 -> Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:27:33 Download gff for MIP02753.complete
Subject Subject Range Query Range Percent Splice Strand
CG42692-RB 1..447 52..498 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:48:34 Download gff for MIP02753.complete
Subject Subject Range Query Range Percent Splice Strand
CG42692-RB 1..447 52..498 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:14:08 Download gff for MIP02753.complete
Subject Subject Range Query Range Percent Splice Strand
CG42692-RB 1..447 52..498 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:27:33 Download gff for MIP02753.complete
Subject Subject Range Query Range Percent Splice Strand
CG42692-RB 10..616 1..605 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:48:34 Download gff for MIP02753.complete
Subject Subject Range Query Range Percent Splice Strand
CG42692-RB 36..642 1..605 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:14:08 Download gff for MIP02753.complete
Subject Subject Range Query Range Percent Splice Strand
CG42692-RB 36..642 1..605 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:54:11 Download gff for MIP02753.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14008364..14008799 170..605 100   Plus
2L 14008136..14008306 1..169 98 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:54:11 Download gff for MIP02753.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14008364..14008799 170..605 100   Plus
2L 14008136..14008306 1..169 98 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:54:11 Download gff for MIP02753.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14008364..14008799 170..605 100   Plus
2L 14008136..14008306 1..169 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:48:34 Download gff for MIP02753.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14008136..14008306 1..169 98 -> Plus
arm_2L 14008364..14008799 170..605 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:00:10 Download gff for MIP02753.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14008364..14008799 170..605 100   Plus
2L 14008136..14008306 1..169 98 -> Plus

MIP02753.pep Sequence

Translation from 51 to 497

> MIP02753.pep
MNKEATKRRRQRCTESLKDILSNLRIRNRKAWFNYVDKTKSPHIRNLLAK
ESYKKLKNASKTSGKEKRKIEKLQRSLKKMMKQELQKQVIYLKNIWVSLA
HVLALLFDQGPIEQISSLVFTIFTITKSLVVGIKYKTKMEDFAEHHSE*

MIP02753.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG42692-PB 148 CG42692-PB 1..148 1..148 746 100 Plus
CG42692-PA 128 CG42692-PA 1..128 1..148 618 86.5 Plus

MIP02753.hyp Sequence

Translation from 51 to 497

> MIP02753.hyp
MNKEATKRRRQRCTESLKDILSNLRIRNRKAWFNYVDKTKSPHIRNLLAK
ESYKKLKNASKTSGKEKRKIEKLQRSLKKMMKQELQKQVIYLKNIWVSLA
HVLALLFDQGPIEQISSLVFTIFTITKSLVVGIKYKTKMEDFAEHHSE*

MIP02753.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG42692-PB 148 CG42692-PB 1..148 1..148 746 100 Plus
CG42692-PA 128 CG42692-PA 1..128 1..148 618 86.5 Plus