Clone MIP02858 Report

Search the DGRC for MIP02858

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:28
Well:58
Vector:pOT2
Associated Gene/TranscriptAP-1sigma-RB
Protein status:MIP02858.pep: gold
Sequenced Size:1142

Clone Sequence Records

MIP02858.complete Sequence

1142 bp assembled on 2009-01-12

GenBank Submission: BT056295.1

> MIP02858.complete
CTGCATGGAAAAATAAGATTTTTCCATATATTTTGTAATCCCAGCCCACG
GAAAAACTTCACCACACAGAGAAAAACAAAAATAAATGATGCTTTTCATG
CTGCTGTTTAGTCGGCAGGGCAAACTGCGGTTACAAAAGTGGTACATGGC
CTATCCGGATAAGGTGAAAAAGAAGATCACCCGGGAACTGGTCACTACGA
TACTGGCCCGCAAGCCCAAAATGTGCTCCTTTCTGGAGTGGAAGGACTGC
AAAATTGTCTACAAAAGGTATGCCAGCTTGTATTTCTGTTGCGCCATCGA
GCAGAACGACAACGAACTGCTGACACTGGAGATCATTCATCGCTATGTGG
AGCTGTTGGATAAGTACTTCGGCAGCGTCTGCGAGCTGGACATTATCTTT
AACTTTGAAAAAGCATACTTTATCCTGGATGAGCTGCTCATTGGCGGCGA
AATCCAGGAGACGTCCAAAAAGAACGTACTTAAGGCGATTGCCTCGCAGG
ATCTGCTCCAAGAGGACGAAGCCGTTGAGGGCACTTTAAGAGACATTGGA
CTCCTCTAAAGAACTAGAACACCCTAGAAATTATGTAGTTGATATTACAC
GCACACCCCGACACAATAACACACACAGTTACACCCCAGCGATAACGTGT
GCTGCACTTGGCACTTTACAGCACTGCTCCATCCACTCCTCAACACTAGT
GTGTGATTTGGCTGTTGTACAGCACTGAAGCGCTGAAAAAAAAATTATAA
GCAAGAAGACGCCAAGCAGCGTGAGGCTCCAAAAAGCAATAATACTATAT
AGTAACATCAGAGCATCTGGTATGCGGTTTTTCATACACTCTATCTCGTA
AATTTCACGCACAGACACAATAGATTCAGAAAAGTTCATGCAAAACAAGC
CAACCTCACGTAGTTCCACCTGGGGTTCCTGAACTGAATTAATATTCCTC
TTCCTATCTACATTTTATAATCGAAAGATCATTCCAATCAATCACCAAAT
GGGCAATAACTAATTTAGTGGGGAAATATATGCAATACTATTCTTACAAT
AGAAACATGTAAGCTTTAATGTTGATTAAATGAGAACGATATATAATTGA
AAATTGTAATAATAACCGAATAAAAAAAAAAAAAAAAAAAAA

MIP02858.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1sigma.a 1272 AP-1sigma.a 153..1272 1..1120 5600 100 Plus
AP-1sigma-RA 1193 AP-1sigma-RA 153..668 1..516 2580 100 Plus
AP-1sigma.b 1037 AP-1sigma.b 184..704 1..521 2575 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19784275..19784883 513..1121 3045 100 Plus
chr3R 27901430 chr3R 19782410..19782591 88..269 910 100 Plus
chr3R 27901430 chr3R 19782835..19782973 377..515 695 100 Plus
chr3R 27901430 chr3R 19782657..19782769 266..378 565 100 Plus
chr3R 27901430 chr3R 19782090..19782177 1..88 440 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:01:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23960896..23961511 513..1128 3080 100 Plus
3R 32079331 3R 23959031..23959212 88..269 910 100 Plus
3R 32079331 3R 23959456..23959594 377..515 695 100 Plus
3R 32079331 3R 23959278..23959390 266..378 565 100 Plus
3R 32079331 3R 23958711..23958798 1..88 440 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23701727..23702342 513..1128 3080 100 Plus
3R 31820162 3R 23699862..23700043 88..269 910 100 Plus
3R 31820162 3R 23700287..23700425 377..515 695 100 Plus
3R 31820162 3R 23700109..23700221 266..378 565 100 Plus
3R 31820162 3R 23699542..23699629 1..88 440 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:20:56 has no hits.

MIP02858.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:21:52 Download gff for MIP02858.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19782090..19782177 1..88 100 -> Plus
chr3R 19782411..19782589 89..267 100 -> Plus
chr3R 19782659..19782767 268..376 100 -> Plus
chr3R 19782835..19782972 377..514 100 -> Plus
chr3R 19784277..19784883 515..1121 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:50:30 Download gff for MIP02858.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RA 1..434 86..519 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:27:34 Download gff for MIP02858.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RC 1..474 86..559 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:06:02 Download gff for MIP02858.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RB 1..474 86..559 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:47 Download gff for MIP02858.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RB 1..474 86..559 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-01-12 18:21:20 Download gff for MIP02858.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RA 58..576 1..519 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:27:34 Download gff for MIP02858.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RB 58..1178 1..1121 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:06:02 Download gff for MIP02858.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RB 61..1181 1..1121 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:47 Download gff for MIP02858.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1sigma-RB 61..1181 1..1121 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:21:52 Download gff for MIP02858.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23959032..23959210 89..267 100 -> Plus
3R 23959280..23959388 268..376 100 -> Plus
3R 23959456..23959593 377..514 100 -> Plus
3R 23958711..23958798 1..88 100 -> Plus
3R 23960898..23961504 515..1121 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:21:52 Download gff for MIP02858.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23959032..23959210 89..267 100 -> Plus
3R 23959280..23959388 268..376 100 -> Plus
3R 23959456..23959593 377..514 100 -> Plus
3R 23958711..23958798 1..88 100 -> Plus
3R 23960898..23961504 515..1121 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:21:52 Download gff for MIP02858.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23959032..23959210 89..267 100 -> Plus
3R 23959280..23959388 268..376 100 -> Plus
3R 23959456..23959593 377..514 100 -> Plus
3R 23958711..23958798 1..88 100 -> Plus
3R 23960898..23961504 515..1121 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:06:02 Download gff for MIP02858.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19784433..19784520 1..88 100 -> Plus
arm_3R 19784754..19784932 89..267 100 -> Plus
arm_3R 19785002..19785110 268..376 100 -> Plus
arm_3R 19785178..19785315 377..514 100 -> Plus
arm_3R 19786620..19787226 515..1121 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:00:11 Download gff for MIP02858.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23701729..23702335 515..1121 100   Plus
3R 23699542..23699629 1..88 100 -> Plus
3R 23699863..23700041 89..267 100 -> Plus
3R 23700111..23700219 268..376 100 -> Plus
3R 23700287..23700424 377..514 100 -> Plus

MIP02858.pep Sequence

Translation from 85 to 558

> MIP02858.pep
MMLFMLLFSRQGKLRLQKWYMAYPDKVKKKITRELVTTILARKPKMCSFL
EWKDCKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCE
LDIIFNFEKAYFILDELLIGGEIQETSKKNVLKAIASQDLLQEDEAVEGT
LRDIGLL*

MIP02858.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17027-PA 156 GF17027-PA 1..155 2..156 761 94.8 Plus
Dana\GF17262-PA 142 GF17262-PA 1..142 1..142 366 46.5 Plus
Dana\GF12884-PA 191 GF12884-PA 1..152 1..146 260 34.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11239-PA 156 GG11239-PA 1..155 2..156 761 94.8 Plus
Dere\GG14749-PA 142 GG14749-PA 1..142 1..142 366 46.5 Plus
Dere\GG22912-PA 191 GG22912-PA 1..152 1..146 257 34.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11883-PA 156 GH11883-PA 1..155 2..156 758 94.2 Plus
Dgri\GH18926-PA 122 GH18926-PA 1..122 21..142 305 45.1 Plus
Dgri\GH21700-PA 191 GH21700-PA 1..152 1..146 259 34.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1sigma-PC 157 CG5864-PC 1..157 1..157 809 100 Plus
AP-1sigma-PB 157 CG5864-PB 1..157 1..157 809 100 Plus
AP-1sigma-PA 157 CG5864-PA 1..156 1..156 761 94.9 Plus
AP-1sigma-PD 152 CG5864-PD 1..145 1..145 746 99.3 Plus
AP-2sigma-PA 142 CG6056-PA 1..142 1..142 366 46.5 Plus
or-PA 191 CG3029-PA 1..152 1..146 266 34.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24137-PA 157 GI24137-PA 1..156 1..156 764 94.2 Plus
Dmoj\GI10836-PA 141 GI10836-PA 3..141 4..142 362 46.8 Plus
Dmoj\GI20707-PA 191 GI20707-PA 1..152 1..146 257 34.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23383-PA 157 GL23383-PA 1..156 1..156 768 94.9 Plus
Dper\GL27163-PA 142 GL27163-PA 1..142 1..142 366 46.5 Plus
Dper\GL11643-PA 191 GL11643-PA 1..152 1..146 258 34.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19188-PA 157 GA19188-PA 1..156 1..156 768 94.9 Plus
Dpse\GA19327-PA 142 GA19327-PA 1..142 1..142 366 46.5 Plus
Dpse\GA15753-PA 191 GA15753-PA 1..152 1..146 258 34.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26541-PA 156 GM26541-PA 1..155 2..156 761 94.8 Plus
Dsec\GM15088-PA 142 GM15088-PA 1..142 1..142 366 46.5 Plus
Dsec\GM16073-PA 188 GM16073-PA 1..152 1..146 258 34.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21048-PA 156 GD21048-PA 1..155 2..156 761 94.8 Plus
Dsim\GD19995-PA 142 GD19995-PA 1..142 1..142 366 46.5 Plus
Dsim\GD11816-PA 191 GD11816-PA 1..152 1..146 257 34.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24652-PA 156 GJ24652-PA 1..155 2..156 758 94.2 Plus
Dvir\GJ14442-PA 142 GJ14442-PA 1..142 1..142 366 46.5 Plus
Dvir\GJ19697-PA 191 GJ19697-PA 1..152 1..146 257 34.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11486-PA 156 GK11486-PA 1..155 2..156 761 94.8 Plus
Dwil\GK12771-PA 142 GK12771-PA 1..142 1..142 366 46.5 Plus
Dwil\GK15725-PA 191 GK15725-PA 1..152 1..146 260 34.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23431-PA 156 GE23431-PA 1..155 2..156 761 94.8 Plus
Dyak\AP-2sigma-PA 142 GE25002-PA 1..142 1..142 366 46.5 Plus
Dyak\GE14351-PA 191 GE14351-PA 1..152 1..146 257 34.2 Plus

MIP02858.hyp Sequence

Translation from 85 to 558

> MIP02858.hyp
MMLFMLLFSRQGKLRLQKWYMAYPDKVKKKITRELVTTILARKPKMCSFL
EWKDCKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCE
LDIIFNFEKAYFILDELLIGGEIQETSKKNVLKAIASQDLLQEDEAVEGT
LRDIGLL*

MIP02858.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1sigma-PC 157 CG5864-PC 1..157 1..157 809 100 Plus
AP-1sigma-PB 157 CG5864-PB 1..157 1..157 809 100 Plus
AP-1sigma-PA 157 CG5864-PA 1..156 1..156 761 94.9 Plus
AP-1sigma-PD 152 CG5864-PD 1..145 1..145 746 99.3 Plus
AP-2sigma-PA 142 CG6056-PA 1..142 1..142 366 46.5 Plus