Clone MIP02973 Report

Search the DGRC for MIP02973

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:29
Well:73
Vector:pOT2
Associated Gene/TranscriptSCAR-RD
Protein status:MIP02973.pep: gold
Sequenced Size:2148

Clone Sequence Records

MIP02973.complete Sequence

2148 bp assembled on 2011-03-17

GenBank Submission: BT126168.1

> MIP02973.complete
TGATTTCGATGAGGACGCACTAATTTACGGGTTTGCCAATTTGGAGATAA
TTGTCAATCGCGCCCGACCATGCCGCTGCCCAAACGATCCATAGAACCCG
TGCATGTGGCCCGCTCCGTGTATCAGCAGGATGAGCTGCAATCCGTGGAG
CTGGAGACGGTCACCAACACCACGCTGACGAACATCATTCGCCAGCTGTC
CTCGCTGTCCAAGCACGCAGAGGATGTGTTCGGTGAACTGGCCCGCGACG
TGGGCAACATCGGGGATCGAGCTAACTCCCTGCAGGCGCGCATCGATCGC
CTAGCTATCAAAGTTACCCAGCTGGACAGCACAGTTGAGGAGGTGCCCTT
GACGGACATTACCCGAAAGAAGGCCTTCAAGTCGGCCAAGGTTTTTGATC
AACAGATCTTCTCGCGCGCCACCATGCCGGCACCAATGATGGACACATAT
GCCCAGTGCGACAAACCGCCGCCCCTCGACAAGCTTAATGTCTATCGAGA
CGATGGCAAGGATGGTCTTAAGTTCTACACGGATCCGAACTACTTCTTTG
AGTTGTGGCGACAGGAGATGCTGAAGGATACCGAACGTGTGATGCACGAC
AAGGGCAAGAAGCTGAACAGACCGCGGCAGGATGGCGGTGCCGGCGGAGC
TGCTGGACGTGGCAATAAGAAACAGAAGACCAAAATAAGGGTGCCGCACA
ATACGCGCGAACAGCAGCGACAACGTGCACTGGTGCACGGCGAAACATTG
ATGCCCAACAACGTCATCTACCGCACACCGAATTCCATGGTCAACGAAGA
AGCCGGATACGGAATTCAGCTAGTCAAAATACAGACTGTGGGCGAGGCTG
ACATCGATTTGCGGCATAGCACTCTCGATGCGCACCACCAAGTTGTCGGT
AATATCCAAGACGTAGATACAGTAAAGCCTTATAATATGCTTTCGCATTT
GGAGAATAACAGTAATGTCACCAAGCAAACCGCCGTTGCGATTGCAGATA
TGGGAGTGTACGATACACGTCCGCCACGTCCTAACTCGATCGAATTGAAC
CGAAGCTATCAGTCGGAGCAGATCGATGGTAGCACCTACGAGCAGCTTCC
ACCGCAGATGGGTAATCAGTATGCTGCCACCTTCGGCAACGGCATGGGTG
GCCCCCAGCAGATGCACATGCAGCATCAGCAGATGTATGACGCCGGAATG
TATCAGTCGCATGCGCTGTACGGCCAAACTGGACAGGGAGTGATGTCGCC
GGAGCCCATCTACGGACCGGGAACACCGTCGCGTAACAAACCGCGTCCGT
CGCAGCCGCCACCGGCTCCGCCATCGAATGGCAGCGGTGGTGGTACGCCC
ACAGCCTCCAATGCCAACACTCCGACAAGGGGCAGAAGTATGTCGACCAG
TCGGGATGCCTTGCCACCGCCTCCACCAGTTCCAGACGTCATTTCACCAA
TGTCTGGCATGAACGGAGTCAACAGCGGGCATATGGCGGCCAAACTGCTT
GGCCGGGCGAACAGTTCGTCGGGAGCTGGATCTCCCAACAGCGTCCAGAA
TGCCAATGATATGGTCATGACGCAACTGAGCAATACTTTCCACAGCATCG
GTATGACGGGCAATCAACTGAACTCCCTTAGCGACTTGCCGCCACCGCCG
CCGGTTCCAGATCAGCACTCGCCTAAGATGTCGCCACCTAATGCCGCGCC
ACCACCGCCGCCGCCACCGCCTCCAGTCGAGGAAGGCATGGGCAGTGGCA
ACCAACACACGCTGCGCCCGCATCAAATTCTTCCCAAATCACTGGCCAAT
GGCGAAATGCAGCAGCCCGGCCAACAAAATGGTGTGCCTCACATTGTCGC
ACCCAAGAAGATGCTGCCTCCATTCCATGACCCACGCAACGACTTGATGA
AGGCCATTCGAGATGGTATTACTCTACGTAAAGTTGAAAAGTCAGAGCAA
AAGGAAATTGAACGAAACGCGGCGCCATTGGATGTGGCTTCAATCTTGGC
CAGACGTGTGGCTATCGAATTATCCGAGTCCGAGGATTCGGATAGCGAAG
ACGACAGCGAGGGCTGGATGGAACCGAACGAAACATCGGCTTGATCCCTG
ATTAACTCGTTAAAGCCTGACATAATTCTAAAAAAAAAAAAAAAAAAA

MIP02973.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10976654..10977462 6..814 4045 100 Plus
chr2L 23010047 chr2L 10979199..10979868 996..1665 3350 100 Plus
chr2L 23010047 chr2L 10979932..10980187 1663..1918 1280 100 Plus
chr2L 23010047 chr2L 10980242..10980456 1915..2129 1075 100 Plus
chr2L 23010047 chr2L 10977636..10977741 815..920 515 99.1 Plus
chr2L 23010047 chr2L 10978387..10978469 915..997 415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10977898..10978706 6..814 4045 100 Plus
2L 23513712 2L 10980443..10981112 996..1665 3350 100 Plus
2L 23513712 2L 10981176..10981431 1663..1918 1280 100 Plus
2L 23513712 2L 10981486..10981712 1915..2141 1120 99.6 Plus
2L 23513712 2L 10978880..10978985 815..920 515 99.1 Plus
2L 23513712 2L 10979631..10979713 915..997 415 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10977898..10978706 6..814 4045 100 Plus
2L 23513712 2L 10980443..10981112 996..1665 3350 100 Plus
2L 23513712 2L 10981176..10981431 1663..1918 1280 100 Plus
2L 23513712 2L 10981486..10981712 1915..2141 1120 99.5 Plus
2L 23513712 2L 10978880..10978985 815..920 515 99 Plus
2L 23513712 2L 10979631..10979713 915..997 415 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:32:44 has no hits.

MIP02973.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:33:44 Download gff for MIP02973.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10979935..10980184 1666..1915 100 -> Plus
chr2L 10980243..10980456 1916..2129 100   Plus
chr2L 10976650..10977462 1..814 99 -> Plus
chr2L 10977636..10977737 815..916 100 -> Plus
chr2L 10978389..10978469 917..997 100 -> Plus
chr2L 10979201..10979868 998..1665 100 -> Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-22 17:53:16 Download gff for MIP02973.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RC 1..739 70..808 100 == Plus
SCAR-RC 740..1923 911..2094 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:57:29 Download gff for MIP02973.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RD 1..2025 70..2094 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:29:43 Download gff for MIP02973.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RD 1..2025 70..2094 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-22 17:53:15 Download gff for MIP02973.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RC 185..992 1..808 99 == Plus
SCAR-RC 993..2211 911..2129 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:57:29 Download gff for MIP02973.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RD 295..2423 1..2129 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:43 Download gff for MIP02973.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RD 295..2423 1..2129 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:33:44 Download gff for MIP02973.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10977894..10978706 1..814 99 -> Plus
2L 10978880..10978981 815..916 100 -> Plus
2L 10979633..10979713 917..997 100 -> Plus
2L 10980445..10981112 998..1665 100 -> Plus
2L 10981179..10981428 1666..1915 100 -> Plus
2L 10981487..10981700 1916..2129 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:33:44 Download gff for MIP02973.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10977894..10978706 1..814 99 -> Plus
2L 10978880..10978981 815..916 100 -> Plus
2L 10979633..10979713 917..997 100 -> Plus
2L 10980445..10981112 998..1665 100 -> Plus
2L 10981179..10981428 1666..1915 100 -> Plus
2L 10981487..10981700 1916..2129 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:33:44 Download gff for MIP02973.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10977894..10978706 1..814 99 -> Plus
2L 10978880..10978981 815..916 100 -> Plus
2L 10979633..10979713 917..997 100 -> Plus
2L 10980445..10981112 998..1665 100 -> Plus
2L 10981179..10981428 1666..1915 100 -> Plus
2L 10981487..10981700 1916..2129 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:57:29 Download gff for MIP02973.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10977894..10978706 1..814 99 -> Plus
arm_2L 10978880..10978981 815..916 100 -> Plus
arm_2L 10979633..10979713 917..997 100 -> Plus
arm_2L 10980445..10981112 998..1665 100 -> Plus
arm_2L 10981179..10981428 1666..1915 100 -> Plus
arm_2L 10981487..10981700 1916..2129 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:02:04 Download gff for MIP02973.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10977894..10978706 1..814 99 -> Plus
2L 10978880..10978981 815..916 100 -> Plus
2L 10979633..10979713 917..997 100 -> Plus
2L 10980445..10981112 998..1665 100 -> Plus
2L 10981179..10981428 1666..1915 100 -> Plus
2L 10981487..10981700 1916..2129 100   Plus

MIP02973.pep Sequence

Translation from 69 to 2093

> MIP02973.pep
MPLPKRSIEPVHVARSVYQQDELQSVELETVTNTTLTNIIRQLSSLSKHA
EDVFGELARDVGNIGDRANSLQARIDRLAIKVTQLDSTVEEVPLTDITRK
KAFKSAKVFDQQIFSRATMPAPMMDTYAQCDKPPPLDKLNVYRDDGKDGL
KFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQDGGAGGAAGRGNK
KQKTKIRVPHNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAGYGIQ
LVKIQTVGEADIDLRHSTLDAHHQVVGNIQDVDTVKPYNMLSHLENNSNV
TKQTAVAIADMGVYDTRPPRPNSIELNRSYQSEQIDGSTYEQLPPQMGNQ
YAATFGNGMGGPQQMHMQHQQMYDAGMYQSHALYGQTGQGVMSPEPIYGP
GTPSRNKPRPSQPPPAPPSNGSGGGTPTASNANTPTRGRSMSTSRDALPP
PPPVPDVISPMSGMNGVNSGHMAAKLLGRANSSSGAGSPNSVQNANDMVM
TQLSNTFHSIGMTGNQLNSLSDLPPPPPVPDQHSPKMSPPNAAPPPPPPP
PPVEEGMGSGNQHTLRPHQILPKSLANGEMQQPGQQNGVPHIVAPKKMLP
PFHDPRNDLMKAIRDGITLRKVEKSEQKEIERNAAPLDVASILARRVAIE
LSESEDSDSEDDSEGWMEPNETSA*

MIP02973.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15838-PA 648 GF15838-PA 1..648 1..674 2626 86.1 Plus
Dana\GF23228-PA 2210 GF23228-PA 146..259 27..136 172 31.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23688-PA 617 GG23688-PA 225..617 283..674 1461 91.2 Plus
Dere\GG23688-PA 617 GG23688-PA 1..248 1..248 1269 99.6 Plus
Dere\GG23102-PA 1787 GG23102-PA 138..251 27..136 172 32.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10763-PA 692 GH10763-PA 1..692 1..674 2217 73.5 Plus
Dgri\GH17981-PA 1780 GH17981-PA 153..262 27..132 164 32.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
SCAR-PD 674 CG4636-PD 1..674 1..674 3552 100 Plus
SCAR-PF 647 CG4636-PF 1..647 1..674 3378 96 Plus
SCAR-PB 641 CG4636-PB 1..641 1..674 3341 95.1 Plus
SCAR-PC 640 CG4636-PC 1..640 1..674 3331 94.8 Plus
SCAR-PE 632 CG4636-PE 1..613 1..674 2875 84.4 Plus
SCAR-PA 613 CG4636-PA 1..613 1..674 2875 84.4 Plus
gukh-PB 534 CG31043-PB 138..251 27..136 170 33.3 Plus
gukh-PC 1044 CG31043-PC 138..251 27..136 170 33.3 Plus
gukh-PE 1764 CG31043-PE 138..251 27..136 170 33.3 Plus
gukh-PA 1788 CG31043-PA 138..251 27..136 170 33.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20586-PA 622 GI20586-PA 1..622 1..674 2027 71.1 Plus
Dmoj\GI10550-PA 1831 GI10550-PA 149..258 27..132 172 34.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19132-PA 615 GL19132-PA 210..615 266..674 1258 74.7 Plus
Dper\GL19132-PA 615 GL19132-PA 1..248 1..248 1226 95.6 Plus
Dper\GL23446-PA 1240 GL23446-PA 151..264 27..136 177 32.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18320-PA 615 GA18320-PA 210..615 266..674 1259 74.7 Plus
Dpse\GA18320-PA 615 GA18320-PA 1..248 1..248 1227 95.6 Plus
Dpse\GA15962-PE 2087 GA15962-PE 148..261 27..136 178 32.5 Plus
Dpse\GA15962-PB 1895 GA15962-PB 148..261 27..136 177 32.5 Plus
Dpse\GA15962-PC 1114 GA15962-PC 148..261 27..136 176 32.5 Plus
Dpse\GA15962-PD 616 GA15962-PD 148..261 27..136 175 32.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18775-PA 596 GM18775-PA 225..596 283..674 1423 85.6 Plus
Dsec\GM18775-PA 596 GM18775-PA 1..248 1..248 1269 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23746-PA 332 GD23746-PA 1..332 347..674 1689 98.2 Plus
Dsim\GD23745-PA 260 GD23745-PA 1..248 1..248 1334 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13927-PA 620 GJ13927-PA 1..244 1..248 1200 89.5 Plus
Dvir\GJ22906-PA 1832 GJ22906-PA 153..262 27..132 181 34.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14890-PA 629 GK14890-PA 1..245 1..248 1180 92.3 Plus
Dwil\GK14890-PA 629 GK14890-PA 207..629 266..674 1067 69.7 Plus
Dwil\GK11025-PA 1859 GK11025-PA 160..269 27..132 175 32.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18500-PA 616 GE18500-PA 1..616 1..674 2813 82.6 Plus
Dyak\GE25573-PA 1789 GE25573-PA 140..253 27..136 177 32.5 Plus

MIP02973.hyp Sequence

Translation from 69 to 2093

> MIP02973.hyp
MPLPKRSIEPVHVARSVYQQDELQSVELETVTNTTLTNIIRQLSSLSKHA
EDVFGELARDVGNIGDRANSLQARIDRLAIKVTQLDSTVEEVPLTDITRK
KAFKSAKVFDQQIFSRATMPAPMMDTYAQCDKPPPLDKLNVYRDDGKDGL
KFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQDGGAGGAAGRGNK
KQKTKIRVPHNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAGYGIQ
LVKIQTVGEADIDLRHSTLDAHHQVVGNIQDVDTVKPYNMLSHLENNSNV
TKQTAVAIADMGVYDTRPPRPNSIELNRSYQSEQIDGSTYEQLPPQMGNQ
YAATFGNGMGGPQQMHMQHQQMYDAGMYQSHALYGQTGQGVMSPEPIYGP
GTPSRNKPRPSQPPPAPPSNGSGGGTPTASNANTPTRGRSMSTSRDALPP
PPPVPDVISPMSGMNGVNSGHMAAKLLGRANSSSGAGSPNSVQNANDMVM
TQLSNTFHSIGMTGNQLNSLSDLPPPPPVPDQHSPKMSPPNAAPPPPPPP
PPVEEGMGSGNQHTLRPHQILPKSLANGEMQQPGQQNGVPHIVAPKKMLP
PFHDPRNDLMKAIRDGITLRKVEKSEQKEIERNAAPLDVASILARRVAIE
LSESEDSDSEDDSEGWMEPNETSA*

MIP02973.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
SCAR-PD 674 CG4636-PD 1..674 1..674 3552 100 Plus
SCAR-PF 647 CG4636-PF 1..647 1..674 3378 96 Plus
SCAR-PB 641 CG4636-PB 1..641 1..674 3341 95.1 Plus
SCAR-PC 640 CG4636-PC 1..640 1..674 3331 94.8 Plus
SCAR-PE 632 CG4636-PE 1..613 1..674 2875 84.4 Plus