MIP03057.complete Sequence
812 bp assembled on 2009-01-12
GenBank Submission: BT056299.1
> MIP03057.complete
CAAAGCTGAAATCATCGAAAAAAATCTCTCTAAAAAAAAATAAACCTGGA
AAATGGTGTGGGATACTCAAGAGTGTAGCAATCAAGATGAGGATTTTGAA
CGGCCCAGCAGGACCCTGATTCTGGTAATCTTCACCCTCGCCGTGTGCCT
CAAGTTGTTCATCATTCTGCTGGAGATTATGTCCTGATGGAATTACCTGC
AATGAGACGAGGGAAAAGGTCGTAATTAGTTGCTGTTTTCTTTCATTTTC
CCTATTTACAAAGATACGTGTAAACAAAGAACTATAAAAAACCGAATCAG
TTGGATCAAATGTTGAAGTGACTGCAGTTTTAGTTTGATCTTTTCTTTCA
CAGGACTCAAATTTCACGGCGGCTAGCTCTCAACCTTTCACATCCTTTTC
ATGTTGAATACCCAAGGATGGCCCAGATGAAATACGGACAACTGACAGAG
ACAAGGCGCCTCGGTTACTTGCAAACAAATTGCCAACAATTGATGAATGT
CTGGTAATGAGACGCGCCGCTCAACATGGTCCAAATAAAATGGTTGGAAA
AAACTTAAGCTAAACGCAACTAAAACTCTGTCAAAAGCGGCGAACGGGGA
AGGGAAAGCGGAAAAACTCTAGGCGCCAGGCGGAGGAAAATGGCCTTTTG
TATTGGGCCTATAAATAAATAGGCTTTCCAATATATATACACACACTAAC
ACACACACACAATCGTGTATTTGGTACACTGAAGCCATTCGGAAAGCAAT
CTGTGTAAAAGTAACGTAGTCATTAATCATTATCATATAAACATCAAAAA
AAAAAAAAAAAA
MIP03057.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:18:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nc_5956.a | 795 | nc_5956.a | 1..795 | 1..795 | 3975 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:14:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chr2R | 21145070 | chr2R | 6975409..6975832 | 372..795 | 2105 | 99.8 | Plus |
| chr2R | 21145070 | chr2R | 6973120..6973493 | 1..374 | 1825 | 99.2 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:01:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11087877..11088302 | 372..797 | 2130 | 100 | Plus |
| 2R | 25286936 | 2R | 11085586..11085957 | 1..372 | 1860 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:36:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25260384 | 2R | 11089076..11089501 | 372..797 | 2130 | 100 | Plus |
| 2R | 25260384 | 2R | 11086785..11087156 | 1..372 | 1860 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-17 00:14:30 has no hits.
MIP03057.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:15:21 Download gff for
MIP03057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chr2R | 6973120..6973495 | 1..376 | 98 | -> | Plus |
| chr2R | 6975414..6975832 | 377..795 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:33:42 Download gff for
MIP03057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43188-RA | 1..135 | 53..187 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:15:48 Download gff for
MIP03057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43188-RA | 1..135 | 53..187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:42 Download gff for
MIP03057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43188-RA | 1..795 | 1..795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:48 Download gff for
MIP03057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43188-RA | 1..795 | 1..795 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:15:21 Download gff for
MIP03057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11087878..11088300 | 373..795 | 100 | | Plus |
| 2R | 11085586..11085957 | 1..372 | 100 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:15:21 Download gff for
MIP03057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11087878..11088300 | 373..795 | 100 | | Plus |
| 2R | 11085586..11085957 | 1..372 | 100 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:15:21 Download gff for
MIP03057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11087878..11088300 | 373..795 | 100 | | Plus |
| 2R | 11085586..11085957 | 1..372 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:42 Download gff for
MIP03057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6973091..6973462 | 1..372 | 100 | -> | Plus |
| arm_2R | 6975383..6975805 | 373..795 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:00:17 Download gff for
MIP03057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11086785..11087156 | 1..372 | 100 | -> | Plus |
| 2R | 11089077..11089499 | 373..795 | 100 | | Plus |
MIP03057.pep Sequence
Translation from 52 to 186
> MIP03057.pep
MVWDTQECSNQDEDFERPSRTLILVIFTLAVCLKLFIILLEIMS*
MIP03057.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43188-PA | 44 | CG43188-PA | 1..44 | 1..44 | 224 | 100 | Plus |
MIP03057.hyp Sequence
Translation from 52 to 186
> MIP03057.hyp
MVWDTQECSNQDEDFERPSRTLILVIFTLAVCLKLFIILLEIMS*
MIP03057.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43188-PA | 44 | CG43188-PA | 1..44 | 1..44 | 224 | 100 | Plus |
