Clone MIP03064 Report

Clone Sequence Records

MIP03064.complete Sequence

2147 bp assembled on 2009-03-09

GenBank Submission: BT072826.1

> MIP03064.complete
CGGAAAGAAGAAAATTCGAGCAACAGAAAGCCAACACAATCCACAAAAAT
GTCTTTATTCGGAGCGTTGATGGGTGATTTCGACGACGATCTCGGCCTTA
TGAACAACCACATGAACCACACTATGAACGCGATGAACATGCAGATGCGC
TCGATGAATCGCCTGATGAACAGCTTTATGCCCGATCCCTTCATGCAGGT
CTCGCCCTTTGACCAGGGATTCCAGCAGAACGCTCTCATGGAGCGTCCGC
AGATGCCGGCCATGCCAGCCATGGGCCTCTTCGGCATGCCCATGATGCCA
AACTTTAATCGCCTGTTGAACGCTGATATTGGTGGCAATTCAGGCGCATC
CTTCTGCCAGAGCACCGTGATGACCATGTCATCGGGTCCCGATGGGCGTC
CTCAGATCTACCAGGCCAGCACTAGTACCAAAACAGGACCGGGAGGCGTT
CGTGAGACCCGCAGGACGGTGCAGGACTCGCGCACTGGGGTGAAGAAGAT
GGCCATTGGTCATCACATCGGCGAGCGGGCACACATTATTGAGAAAGAGC
AGGACATGCGCTCAGGACAACTGGAGGAGCGCCAGGAGTTCATTAATCTG
GAGGAGGGAGAAGCCGAGCAGTTTGACAGGGAGTTTACATCGCGCGCTAG
TCGCGGAGCGGTGCAGTCAAGACATCATGCTGGTGGCATGCAGGCCATCA
TGCCCGCCCGTCCAGCGGCACACACCTCGACGTTGACCATTGAGCCAGTG
GAGGACGACGACGACGATGATGATGACTGTGTAATCCAGGAGCAGCAACC
GGTTCGCTCCTCCGCGGGCCGCCATTATTCCAGTGCGCCAACGGCACCGC
AGAACAGTGGCAACATTGCAACAGCAGCAGCACCAACACCAACATCCTCG
CCAACAACCTACGATACAAGCAACGGAAACAACAATAACTACGTGAGCTC
TCGTCGTTCGTACCTGCGAAATGGGCATGGGCATAGCCTGGCCACGCCGC
GCCGCCCACTAAGGACACCCCCATCCTCGCCGCTGGCTACGGTGTCCACT
TCTCCAAGAGATTGGCGTATTTATAATTCGCGGTACCACCGCAAGTAGAG
CGGATACAGTACCAAATACATAAAATGAAACCTATGCTAATCCAGATAAA
TATCATAAGTAATAAAGTCAACAACGAGAAACACTCGACATTCGGCTGTC
TTCGACGTAACTACATGCACTCTACTAACCGAAGGCGCCACCAACGCTAC
GATCCGCTCAGCTCAGCTCCGCTTCATCGCCACAAGTACTTCGAACTTCG
AACAGCAGCAACACCACATCTACGTGCCGTGCCGGCAGCTCAAGACTATG
GCCGCAAGCTACGTCATACATCCACATCCCTATGCCGCCAATCCGAGGCG
CCAACAACGTGCCGTAAAACATTTTCACACGGAGGACGAAGCGGCCAGCT
CCTACAAGGCGGTCAAGCGCGGCAAGAAGAAGTAGTAGAAACGTGATCAT
CTGTATGCCAACATCTTCCGCATCGCACACTCAAAAACACTAGGAAGCAA
AGCGTTGGGTTCTGTTCCATAGCAGGAAAACCAATTCAAATATTTTTTAA
CAAACACAATTCTTTACCAGTTCTGTCTTATCCTGCGTGAGTCGACCAGA
ATGCAACACTAAAAAATGTACAACTTCAAGATGCTATTGATGTGCACGCA
GGATACAGAACAACTTGCTTAAATTTACTTAAAACAAATGTGACTATTCA
ACGCCGAAATCATTACAACACACACTCTCAGACCTAATCGAAAAATTCAA
TGAAAGTAATGGAATATATATGAAATCGTAATTATAAGTTTGAATTATTT
GATTAATTCTCAAGTTTTTAGATTTTGTTAGCCACTAAGCTTTAAATTAT
GGATGCCAGTTAGCGTGCAAATGAACACAATTGATTTGAAGGCTCCGAAC
GATAGAAAACAACAATTACCAATTCCCCAAATACATGTAATTCGTAAGGC
CTAAGTAAATGTTAACGTGAATTTAATTAAATGGTAATTACATTATAATA
GTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP03064.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:26:02

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Mlf-RE	2199	Mlf-RE	84..2138	1..2055	10275	100	Plus
Mlf-RD	1893	Mlf-RD	84..1141	1..1058	5290	100	Plus
Mlf.a	1896	Mlf.a	84..1141	1..1058	5290	100	Plus
Mlf-RD	1893	Mlf-RD	1142..1832	1365..2055	3455	100	Plus
Mlf.a	1896	Mlf.a	1145..1835	1365..2055	3455	100	Plus

Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:41:56

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
chr2R	21145070	chr2R	11823162..11823849	2052..1365	3440	100	Minus
chr2R	21145070	chr2R	11825716..11826248	857..325	2665	100	Minus
chr2R	21145070	chr2R	11824290..11824597	1364..1057	1540	100	Minus
chr2R	21145070	chr2R	11826306..11826526	325..105	1105	100	Minus
chr2R	21145070	chr2R	11824948..11825151	1058..855	1020	100	Minus
chr2R	21145070	chr2R	11827179..11827282	104..1	520	100	Minus

Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:01:33 has no hits.

Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:41:52

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
2R	25286936	2R	15935890..15936580	2055..1365	3455	100	Minus
2R	25286936	2R	15938447..15938979	857..325	2665	100	Minus
2R	25286936	2R	15937021..15937328	1364..1057	1540	100	Minus
2R	25286936	2R	15939037..15939257	325..105	1105	100	Minus
2R	25286936	2R	15937679..15937882	1058..855	1020	100	Minus
2R	25286936	2R	15939910..15940013	104..1	520	100	Minus

Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:42:58

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
2R	25260384	2R	15937089..15937779	2055..1365	3455	100	Minus
2R	25260384	2R	15939646..15940178	857..325	2665	100	Minus
2R	25260384	2R	15938220..15938527	1364..1057	1540	100	Minus
2R	25260384	2R	15940236..15940456	325..105	1105	100	Minus
2R	25260384	2R	15938878..15939081	1058..855	1020	100	Minus
2R	25260384	2R	15941109..15941212	104..1	520	100	Minus

Blast to na_te.dros performed 2019-03-16 19:41:54

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	6680..6833	793..948	207	63.5	Plus
roo	9092	roo DM_ROO 9092bp	1075..1181	835..940	188	69.7	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	2406..2485	869..949	186	71.6	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	2337..2443	839..949	184	67.9	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	2289..2410	815..934	173	65.9	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	6739..6851	835..948	170	64.3	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	1454..1593	768..907	167	64.1	Plus
roo	9092	roo DM_ROO 9092bp	1065..1155	853..943	158	66.7	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	2439..2520	855..939	156	68.2	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	6731..6798	869..934	155	72.1	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	2308..2394	853..942	154	66.7	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	6760..6878	835..948	151	62.5	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	6769..6884	835..948	143	63	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	2490..2561	861..934	139	70.7	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	6814..6925	835..950	139	61.9	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	2306..2371	868..934	134	68.7	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	2774..2898	835..948	133	64.3	Plus
roo	9092	roo DM_ROO 9092bp	1096..1160	835..896	129	73.1	Plus
G6	2042	G6 G6_DM 2042bp	1907..1973	1948..2013	125	67.2	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	2789..2856	868..933	119	66.2	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	882..908	754..780	117	92.6	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	2598..2688	839..927	117	67.7	Plus
roo	9092	roo DM_ROO 9092bp	1102..1179	846..922	117	66.2	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	6827..6896	830..896	116	68.6	Plus

MIP03064.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:42:38 Download gff for MIP03064.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
chr2R	11823162..11823849	1365..2052	100	<-	Minus
chr2R	11824290..11824595	1059..1364	100	<-	Minus
chr2R	11824948..11825148	858..1058	100	<-	Minus
chr2R	11825716..11826247	326..857	100	<-	Minus
chr2R	11826306..11826526	105..325	100	<-	Minus
chr2R	11827179..11827282	1..104	100		Minus

Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:51:44 Download gff for MIP03064.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Mlf-RD	1..1013	49..1062	99	==	Plus

Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:39:11 Download gff for MIP03064.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Mlf-RE	1..1050	49..1098	100		Plus

Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:45:33 Download gff for MIP03064.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Mlf-RE	1..1050	49..1098	100		Plus

Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:51 Download gff for MIP03064.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Mlf-RE	1..1050	49..1098	100		Plus

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-03-09 17:47:58 Download gff for MIP03064.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Mlf-RD	61..1121	1..1062	99	==	Plus
Mlf-RD	1122..1804	1368..2050	100		Plus

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:39:11 Download gff for MIP03064.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Mlf-RE	61..2112	1..2052	100		Plus

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:33 Download gff for MIP03064.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Mlf-RE	61..2112	1..2052	100		Plus

Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:51 Download gff for MIP03064.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Mlf-RE	61..2112	1..2052	100		Plus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:38 Download gff for MIP03064.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
2R	15939037..15939257	105..325	100	<-	Minus
2R	15939910..15940013	1..104	100		Minus
2R	15935893..15936580	1365..2052	100	<-	Minus
2R	15937021..15937326	1059..1364	100	<-	Minus
2R	15937679..15937879	858..1058	100	<-	Minus
2R	15938447..15938978	326..857	100	<-	Minus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:38 Download gff for MIP03064.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
2R	15939037..15939257	105..325	100	<-	Minus
2R	15939910..15940013	1..104	100		Minus
2R	15935893..15936580	1365..2052	100	<-	Minus
2R	15937021..15937326	1059..1364	100	<-	Minus
2R	15937679..15937879	858..1058	100	<-	Minus
2R	15938447..15938978	326..857	100	<-	Minus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:38 Download gff for MIP03064.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
2R	15939037..15939257	105..325	100	<-	Minus
2R	15939910..15940013	1..104	100		Minus
2R	15935893..15936580	1365..2052	100	<-	Minus
2R	15937021..15937326	1059..1364	100	<-	Minus
2R	15937679..15937879	858..1058	100	<-	Minus
2R	15938447..15938978	326..857	100	<-	Minus

Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:33 Download gff for MIP03064.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
arm_2R	11823398..11824085	1365..2052	100	<-	Minus
arm_2R	11824526..11824831	1059..1364	100	<-	Minus
arm_2R	11825184..11825384	858..1058	100	<-	Minus
arm_2R	11825952..11826483	326..857	100	<-	Minus
arm_2R	11826542..11826762	105..325	100	<-	Minus
arm_2R	11827415..11827518	1..104	100		Minus

Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:13:12 Download gff for MIP03064.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
2R	15937092..15937779	1365..2052	100	<-	Minus
2R	15938220..15938525	1059..1364	100	<-	Minus
2R	15938878..15939078	858..1058	100	<-	Minus
2R	15939646..15940177	326..857	100	<-	Minus
2R	15940236..15940456	105..325	100	<-	Minus
2R	15941109..15941212	1..104	100		Minus

MIP03064.hyp Sequence

Translation from 0 to 1097

> MIP03064.hyp
RKEENSSNRKPTQSTKMSLFGALMGDFDDDLGLMNNHMNHTMNAMNMQMR
SMNRLMNSFMPDPFMQVSPFDQGFQQNALMERPQMPAMPAMGLFGMPMMP
NFNRLLNADIGGNSGASFCQSTVMTMSSGPDGRPQIYQASTSTKTGPGGV
RETRRTVQDSRTGVKKMAIGHHIGERAHIIEKEQDMRSGQLEERQEFINL
EEGEAEQFDREFTSRASRGAVQSRHHAGGMQAIMPARPAAHTSTLTIEPV
EDDDDDDDDCVIQEQQPVRSSAGRHYSSAPTAPQNSGNIATAAAPTPTSS
PTTYDTSNGNNNNYVSSRRSYLRNGHGHSLATPRRPLRTPPSSPLATVST
SPRDWRIYNSRYHRK*

MIP03064.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:31

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Mlf-PH	349	CG8295-PH	1..349	17..365	1843	100	Plus
Mlf-PE	349	CG8295-PE	1..349	17..365	1843	100	Plus
Mlf-PD	376	CG8295-PD	1..336	17..352	1765	100	Plus
Mlf-PC	374	CG8295-PC	16..334	34..352	1669	99.4	Plus
Mlf-PB	273	CG8295-PB	1..272	17..288	1415	99.3	Plus

MIP03064.pep Sequence

Translation from 0 to 1097

> MIP03064.pep
RKEENSSNRKPTQSTKMSLFGALMGDFDDDLGLMNNHMNHTMNAMNMQMR
SMNRLMNSFMPDPFMQVSPFDQGFQQNALMERPQMPAMPAMGLFGMPMMP
NFNRLLNADIGGNSGASFCQSTVMTMSSGPDGRPQIYQASTSTKTGPGGV
RETRRTVQDSRTGVKKMAIGHHIGERAHIIEKEQDMRSGQLEERQEFINL
EEGEAEQFDREFTSRASRGAVQSRHHAGGMQAIMPARPAAHTSTLTIEPV
EDDDDDDDDCVIQEQQPVRSSAGRHYSSAPTAPQNSGNIATAAAPTPTSS
PTTYDTSNGNNNNYVSSRRSYLRNGHGHSLATPRRPLRTPPSSPLATVST
SPRDWRIYNSRYHRK*

MIP03064.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:57:58

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dana\GF13336-PA	385	GF13336-PA	1..337	17..350	1313	81.2	Plus

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:57:58

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dere\GG22321-PA	372	GG22321-PA	1..332	17..352	1515	92.6	Plus

Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:57:59

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dgri\GH22871-PA	408	GH22871-PA	1..345	17..350	1036	70.3	Plus

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:55

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Mlf-PH	349	CG8295-PH	1..349	17..365	1843	100	Plus
Mlf-PE	349	CG8295-PE	1..349	17..365	1843	100	Plus
Mlf-PD	376	CG8295-PD	1..336	17..352	1765	100	Plus
Mlf-PC	374	CG8295-PC	16..334	34..352	1669	99.4	Plus
Mlf-PA	309	CG8295-PA	1..270	17..286	1417	100	Plus
Mlf-PB	273	CG8295-PB	1..272	17..288	1415	99.3	Plus
Mlf-PF	308	CG8295-PF	16..268	34..286	1321	99.2	Plus
Mlf-PG	288	CG8295-PG	1..249	38..286	1304	100	Plus

Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:58:00

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dmoj\GI21251-PA	318	GI21251-PA	1..253	17..270	900	78.6	Plus

Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:58:00

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dper\GL16259-PA	389	GL16259-PA	1..337	17..350	1105	77.5	Plus

Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:58:01

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dpse\GA20964-PA	389	GA20964-PA	1..337	17..350	1100	77.2	Plus
Dpse\GA20964-PD	366	GA20964-PD	3..314	38..350	1010	76.7	Plus
Dpse\GA20964-PB	315	GA20964-PB	1..273	17..286	965	81.7	Plus

Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:58:02

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dsec\GM20108-PA	373	GM20108-PA	1..333	17..352	1731	97.3	Plus

Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:58:02

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dsim\GD25586-PA	204	GD25586-PA	1..164	186..352	807	94.6	Plus
Dsim\GD25585-PA	147	GD25585-PA	1..146	17..176	746	90	Plus

Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:58:03

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dvir\GJ20855-PA	410	GJ20855-PA	1..352	17..351	983	67.1	Plus

Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:58:04

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dwil\GK22209-PA	405	GK22209-PA	1..353	17..351	1097	70.8	Plus

Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:58:05

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dyak\Mlf-PA	372	GE14117-PA	1..332	17..352	1560	94.9	Plus

Library:	MIP
Tissue Source:	Pooled D melanogaster cDNA libraries
Created by:
Date Registered:	2008-10-08
Comments:
Original Plate Number:	30
Well:	64
Vector:	pOT2
Associated Gene/Transcript	Mlf-RE
Protein status:	MIP03064.pep: gold
Sequenced Size:	2147

Clone MIP03064 Report

Clone and Library Details

Clone Sequence Records

MIP03064.complete Sequence

MIP03064.complete Blast Records

MIP03064.complete Sim4 Records

MIP03064.hyp Sequence

MIP03064.hyp Blast Records

MIP03064.pep Sequence

MIP03064.pep Blast Records