Clone MIP03147 Report

Search the DGRC for MIP03147

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:31
Well:47
Vector:pOT2
Associated Gene/TranscriptNurf-38-RC
Protein status:MIP03147.pep: gold
Sequenced Size:1285

Clone Sequence Records

MIP03147.complete Sequence

1285 bp assembled on 2009-01-26

GenBank Submission: BT058058.1

> MIP03147.complete
TCGGCACGAGGCTTCACGTGCGGTTGGTCGCTTGTCCGGCTCGATTCCAA
CGTCACCAGCGGCCCTTGCCAGCAATTGCAGATATATTCAGATAGAACGG
AAGCGCACGAAATCACACGAGATGGCTCTGTACGAAACCGTTGAGAAGGG
CGCTAAGAATTCGCCGAGCTACAGCCTGTATTTCAAAAACAAGTGCGGCA
ATGTCATCTCGCCGATGCACGACATTCCACTGTACGCCAACGAGGAGAAA
ACTATCTACAACATGGTGGTGGAGGTGCCACGTTGGACCAACGCGAAAAT
GGAGATTAGCTTGAAGACCCCTATGAATCCCATCAAGCAGGACATCAAGA
AGGGTAAGCTGCGGTTCGTGGCCAACTGCTTCCCGCACAAGGGCTACATC
TGGAACTACGGAGCCCTGCCCCAGACCTGGGAAAACCCCGACCACATCGA
GCCCTCCACCGGCTGCAAGGGTGACAACGATCCCATCGATGTCATCGAGA
TTGGCTACCGAGTGGCTAAGCGCGGCGACGTGCTGAAGGTCAAGGTGCTG
GGCACCATTGCCTTGATTGACGAGGGCGAAACCGACTGGAAGATAATCGC
CATCGATGTGAACGATCCGTTGGCCTCGAAAGTCAATGATATCGCCGATG
TGGACCAGTACTTCCCGGGTCTGCTTCGTGCCACCGTTGAGTGGTTCAAG
ATCTACAAGATCCCCGATGGCAAGCCTGAGAATCAGTTTGCTTTCAACGG
CGATGCCAAGAATGCGGACTTTGCCAACACCATCATTGCCGAGACCCACA
AGTTCTGGCAGAACTTGGTGCACCAGAGCCCCGCATCCGGGTCCATCTCC
ACCACCAACATCACCAACCGCAACTCGGAGCACGTCATTCCCAAGGAGGA
GGCCGAGAAGATACTGGCCGAGGCCCCCGATGGCGGCCAGGTCGAGGAGG
TGTCTGATACAGGTAAGGTTCACTATATTAGATCGAACTTATAGCTGCTT
CACCCGATCCCAACCAAAAACACACTACTCCAACACACGCTTTAACCACC
AGTAACTTGCAAACAAATTGGTTACACAAACACAACCTGCACGCTTACTA
ATAGCTACTTTAATTGTCCAGTTAGCAAGCTAAATTGAGATTACTCCATG
CTGTAAATACTGCTGAAACCCAATTTATGTAATTGGCTTGCTTGCGTTCG
TTAATCGTTGTACATATACTTTATACTGAATGTTATCCTGAAATAAACCC
TTTTTATACCAATTTAAAAAAAAAAAAAAAAAAAA

MIP03147.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Nurf-38.c 1331 Nurf-38.c 69..1324 11..1266 6280 100 Plus
Nurf-38.d 1500 Nurf-38.d 69..1324 11..1266 6280 100 Plus
Nurf-38.a 1210 Nurf-38.a 61..1012 11..962 4760 100 Plus
Nurf-38.a 1210 Nurf-38.a 1010..1210 1050..1250 1005 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20445082..20445494 1265..853 2050 99.8 Minus
chr2R 21145070 chr2R 20445760..20446157 700..303 1975 99.7 Minus
chr2R 21145070 chr2R 20446783..20446957 185..11 875 100 Minus
chr2R 21145070 chr2R 20445553..20445706 852..699 770 100 Minus
chr2R 21145070 chr2R 20446222..20446340 304..186 595 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:01:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24559151..24559564 1266..853 2070 100 Minus
2R 25286936 2R 24559830..24560227 700..303 1990 100 Minus
2R 25286936 2R 24560853..24561027 185..11 875 100 Minus
2R 25286936 2R 24559623..24559776 852..699 770 100 Minus
2R 25286936 2R 24560292..24560410 304..186 595 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24560350..24560763 1266..853 2070 100 Minus
2R 25260384 2R 24561029..24561426 700..303 1990 100 Minus
2R 25260384 2R 24562052..24562226 185..11 875 100 Minus
2R 25260384 2R 24560822..24560975 852..699 770 100 Minus
2R 25260384 2R 24561491..24561609 304..186 595 100 Minus
Blast to na_te.dros performed on 2019-03-16 06:54:09 has no hits.

MIP03147.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:55:01 Download gff for MIP03147.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20445082..20445494 853..1265 99 <- Minus
chr2R 20445553..20445704 701..852 100 <- Minus
chr2R 20445760..20446155 305..700 99 <- Minus
chr2R 20446222..20446340 186..304 100 <- Minus
chr2R 20446783..20446957 11..185 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:04:56 Download gff for MIP03147.complete
Subject Subject Range Query Range Percent Splice Strand
Nurf-38-RA 34..985 11..962 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:33:32 Download gff for MIP03147.complete
Subject Subject Range Query Range Percent Splice Strand
Nurf-38-RA 34..985 11..962 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:20:35 Download gff for MIP03147.complete
Subject Subject Range Query Range Percent Splice Strand
Nurf-38-RA 34..985 11..962 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:25:20 Download gff for MIP03147.complete
Subject Subject Range Query Range Percent Splice Strand
Nurf-38-RA 34..985 11..962 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-01-26 14:27:24 Download gff for MIP03147.complete
Subject Subject Range Query Range Percent Splice Strand
Nurf-38-RB 15..966 11..962 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:33:32 Download gff for MIP03147.complete
Subject Subject Range Query Range Percent Splice Strand
Nurf-38-RB 26..977 11..962 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:35 Download gff for MIP03147.complete
Subject Subject Range Query Range Percent Splice Strand
Nurf-38-RC 27..1281 11..1265 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:25:20 Download gff for MIP03147.complete
Subject Subject Range Query Range Percent Splice Strand
Nurf-38-RC 27..1281 11..1265 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:55:01 Download gff for MIP03147.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24559830..24560225 305..700 100 <- Minus
2R 24559152..24559564 853..1265 100 <- Minus
2R 24559623..24559774 701..852 100 <- Minus
2R 24560292..24560410 186..304 100 <- Minus
2R 24560853..24561027 11..185 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:55:01 Download gff for MIP03147.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24559830..24560225 305..700 100 <- Minus
2R 24559152..24559564 853..1265 100 <- Minus
2R 24559623..24559774 701..852 100 <- Minus
2R 24560292..24560410 186..304 100 <- Minus
2R 24560853..24561027 11..185 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:55:01 Download gff for MIP03147.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24559830..24560225 305..700 100 <- Minus
2R 24559152..24559564 853..1265 100 <- Minus
2R 24559623..24559774 701..852 100 <- Minus
2R 24560292..24560410 186..304 100 <- Minus
2R 24560853..24561027 11..185 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:35 Download gff for MIP03147.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20448376..20448550 11..185 100   Minus
arm_2R 20446675..20447087 853..1265 100 <- Minus
arm_2R 20447146..20447297 701..852 100 <- Minus
arm_2R 20447353..20447748 305..700 100 <- Minus
arm_2R 20447815..20447933 186..304 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:06:48 Download gff for MIP03147.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24561509..24561627 186..304 100 <- Minus
2R 24562070..24562244 11..185 100   Minus
2R 24560369..24560781 853..1265 100 <- Minus
2R 24560840..24560991 701..852 100 <- Minus
2R 24561047..24561442 305..700 100 <- Minus

MIP03147.pep Sequence

Translation from 1 to 993

> MIP03147.pep
RHEASRAVGRLSGSIPTSPAALASNCRYIQIERKRTKSHEMALYETVEKG
AKNSPSYSLYFKNKCGNVISPMHDIPLYANEEKTIYNMVVEVPRWTNAKM
EISLKTPMNPIKQDIKKGKLRFVANCFPHKGYIWNYGALPQTWENPDHIE
PSTGCKGDNDPIDVIEIGYRVAKRGDVLKVKVLGTIALIDEGETDWKIIA
IDVNDPLASKVNDIADVDQYFPGLLRATVEWFKIYKIPDGKPENQFAFNG
DAKNADFANTIIAETHKFWQNLVHQSPASGSISTTNITNRNSEHVIPKEE
AEKILAEAPDGGQVEEVSDTGKVHYIRSNL*

MIP03147.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 10:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11243-PA 333 GF11243-PA 7..323 1..320 1413 85.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 10:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19918-PA 290 GG19918-PA 1..288 41..327 1483 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 10:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21893-PA 291 GH21893-PA 1..289 41..327 1294 82.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
Nurf-38-PA 338 CG4634-PA 12..328 4..320 1680 100 Plus
Nurf-38-PC 290 CG4634-PC 1..290 41..330 1549 100 Plus
Nurf-38-PB 290 CG4634-PB 1..280 41..320 1496 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 10:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20392-PA 291 GI20392-PA 1..289 41..327 1292 83 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 10:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10109-PA 281 GL10109-PA 1..279 41..327 1284 85.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 10:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25082-PA 291 GA25082-PA 1..289 41..327 1380 89.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 10:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11820-PA 290 GM11820-PA 1..288 41..327 1499 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 10:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24942-PA 290 GD24942-PA 1..288 41..327 1499 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 10:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22117-PA 291 GJ22117-PA 1..289 41..327 1316 85.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 10:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19471-PA 289 GK19471-PA 1..287 41..327 1360 87.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 10:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11442-PA 290 GE11442-PA 1..288 41..327 1470 95.5 Plus

MIP03147.hyp Sequence

Translation from 11 to 993

> MIP03147.hyp
ASRAVGRLSGSIPTSPAALASNCRYIQIERKRTKSHEMALYETVEKGAKN
SPSYSLYFKNKCGNVISPMHDIPLYANEEKTIYNMVVEVPRWTNAKMEIS
LKTPMNPIKQDIKKGKLRFVANCFPHKGYIWNYGALPQTWENPDHIEPST
GCKGDNDPIDVIEIGYRVAKRGDVLKVKVLGTIALIDEGETDWKIIAIDV
NDPLASKVNDIADVDQYFPGLLRATVEWFKIYKIPDGKPENQFAFNGDAK
NADFANTIIAETHKFWQNLVHQSPASGSISTTNITNRNSEHVIPKEEAEK
ILAEAPDGGQVEEVSDTGKVHYIRSNL*

MIP03147.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
Nurf-38-PA 338 CG4634-PA 12..328 1..317 1680 100 Plus
Nurf-38-PC 290 CG4634-PC 1..290 38..327 1549 100 Plus
Nurf-38-PB 290 CG4634-PB 1..280 38..317 1496 100 Plus