Clone MIP03822 Report

Search the DGRC for MIP03822

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:38
Well:22
Vector:pOT2
Associated Gene/TranscriptCG33260-RB
Protein status:MIP03822.pep: Imported from assembly
Sequenced Size:884

Clone Sequence Records

MIP03822.complete Sequence

884 bp assembled on 2010-01-14

GenBank Submission: BT120125.1

> MIP03822.complete
ACTGGCTTCGTTTTCAACGTGGATGATTACATGGAACTGCGGAGCAAACA
TCGCATAATGGGTGCTCCAGTGGGCACAGCGAACACAAAAGGCTGGAGTC
CTAATCAATCCACTCTGCCCGTGGAGCTCAGTAAATTTGAAACCCAATTG
CTTTTGGATGAGAATATAGCAAAGTTAGTTGATAAATCCAAAGATCTAAA
GGCTAAACCCACTGCCGAGAAACTTGAGGAGTGCAAGGCGGATTTTGAAT
CCCGGTTACTGGGACAGGAGGAAGCATTGAAAACGGAGAAACTACGGGAA
ACTGAACGATACATGGATAAGATTCTGACGGGAAAACGCAAGAAGTTGCT
CAAGCAGGGCAAAAATGAATTGGCTGCCGCTCTGACTGATAAGGATGTAC
TATTGGAGATGTCTGTGAATTTCAAATTCGATCGCCAAAATGCCTTGCTG
GAGGTGCATTGTGAACATCCCACGGATCACTCTGCGCAAATAGTTACCGG
TCCCATTGTGCACACCAATTCCCTGAAATACCGCGTTTTCAAAGATCTGT
GGAGGCGCGGAAAGTACGTGACTTCCGGCGATGCATTTGGAGCGGACTTT
CTGGTTTACCCCGGCGATCCCATGATCTACCACGCCTCCCACATTGTAAT
TTTGCACGAGCAACCTGTAATTAAGCCCCTGGAACTGATAGCAAAAGTTC
GTCTATCGGTAATTGTCAACAAAAGCTGCGTTTTCGCCTACGAGATGGAA
AATAATGAGGAAGAAATACATTACCAAACGGTCGCATGGTGCAATCTTGG
AAAATGAGGAAATCACAGGCAAGTACATGGAGCAAAAAACATGAAATGTG
ACCATAAAATTCTGACAAAAAAAAAAAAAAAAAA

MIP03822.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG33260.a 951 CG33260.a 169..951 25..807 3915 100 Plus
CG33260-RB 777 CG33260-RB 1..777 31..807 3885 100 Plus
Trl-RF 2613 Trl-RF 1..424 399..822 2120 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14750630..14751014 866..482 1910 99.7 Minus
chr3L 24539361 chr3L 14751402..14751662 373..113 1305 100 Minus
chr3L 24539361 chr3L 14751077..14751185 481..373 545 100 Minus
chr3L 24539361 chr3L 14751750..14751837 112..25 440 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:02:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14760515..14760904 871..482 1950 100 Minus
3L 28110227 3L 14761292..14761552 373..113 1305 100 Minus
3L 28110227 3L 14760967..14761075 481..373 545 100 Minus
3L 28110227 3L 14761640..14761727 112..25 440 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 14753615..14754004 871..482 1950 100 Minus
3L 28103327 3L 14754392..14754652 373..113 1305 100 Minus
3L 28103327 3L 14754067..14754175 481..373 545 100 Minus
3L 28103327 3L 14754740..14754827 112..25 440 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:52:35 has no hits.

MIP03822.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:53:37 Download gff for MIP03822.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14751750..14751836 26..112 100 <- Minus
chr3L 14751894..14751918 1..25 100   Minus
chr3L 14750630..14751014 482..866 99 <- Minus
chr3L 14751077..14751184 374..481 100 <- Minus
chr3L 14751402..14751662 113..373 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-01-14 11:00:24 Download gff for MIP03822.complete
Subject Subject Range Query Range Percent Splice Strand
CG33260-RB 1..777 31..807 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:52:32 Download gff for MIP03822.complete
Subject Subject Range Query Range Percent Splice Strand
CG33260-RC 25..831 1..807 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:06:56 Download gff for MIP03822.complete
Subject Subject Range Query Range Percent Splice Strand
CG33260-RC 25..831 1..807 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:13 Download gff for MIP03822.complete
Subject Subject Range Query Range Percent Splice Strand
CG33260-RC 25..831 1..807 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-14 11:00:21 Download gff for MIP03822.complete
Subject Subject Range Query Range Percent Splice Strand
CG33260-RB 1..777 31..807 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:52:32 Download gff for MIP03822.complete
Subject Subject Range Query Range Percent Splice Strand
CG33260-RC 37..843 1..807 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:06:56 Download gff for MIP03822.complete
Subject Subject Range Query Range Percent Splice Strand
CG33260-RC 37..902 1..866 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:13 Download gff for MIP03822.complete
Subject Subject Range Query Range Percent Splice Strand
CG33260-RC 37..902 1..866 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:53:37 Download gff for MIP03822.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14760967..14761074 374..481 100 <- Minus
3L 14761292..14761552 113..373 100 <- Minus
3L 14761640..14761726 26..112 100 <- Minus
3L 14760520..14760904 482..866 100 <- Minus
3L 14761784..14761808 1..25 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:53:37 Download gff for MIP03822.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14760967..14761074 374..481 100 <- Minus
3L 14761292..14761552 113..373 100 <- Minus
3L 14761640..14761726 26..112 100 <- Minus
3L 14760520..14760904 482..866 100 <- Minus
3L 14761784..14761808 1..25 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:53:37 Download gff for MIP03822.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14760967..14761074 374..481 100 <- Minus
3L 14761292..14761552 113..373 100 <- Minus
3L 14761640..14761726 26..112 100 <- Minus
3L 14760520..14760904 482..866 100 <- Minus
3L 14761784..14761808 1..25 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:06:56 Download gff for MIP03822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14754740..14754826 26..112 100 <- Minus
arm_3L 14754884..14754908 1..25 100   Minus
arm_3L 14753620..14754004 482..866 100 <- Minus
arm_3L 14754067..14754174 374..481 100 <- Minus
arm_3L 14754392..14754652 113..373 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:28:43 Download gff for MIP03822.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14753620..14754004 482..866 100 <- Minus
3L 14754067..14754174 374..481 100 <- Minus
3L 14754392..14754652 113..373 100 <- Minus
3L 14754740..14754826 26..112 100 <- Minus
3L 14754884..14754908 1..25 100   Minus

MIP03822.pep Sequence

Translation from 0 to 806

> MIP03822.pep
TGFVFNVDDYMELRSKHRIMGAPVGTANTKGWSPNQSTLPVELSKFETQL
LLDENIAKLVDKSKDLKAKPTAEKLEECKADFESRLLGQEEALKTEKLRE
TERYMDKILTGKRKKLLKQGKNELAAALTDKDVLLEMSVNFKFDRQNALL
EVHCEHPTDHSAQIVTGPIVHTNSLKYRVFKDLWRRGKYVTSGDAFGADF
LVYPGDPMIYHASHIVILHEQPVIKPLELIAKVRLSVIVNKSCVFAYEME
NNEEEIHYQTVAWCNLGK*

MIP03822.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25183-PA 275 GF25183-PA 9..275 1..268 1061 73.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13711-PA 275 GG13711-PA 9..275 1..268 1259 91.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16791-PA 239 GH16791-PA 9..239 1..268 755 55.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG33260-PC 276 CG33260-PC 9..276 1..268 1394 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13805-PA 275 GI13805-PA 9..275 1..268 925 64.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26106-PA 366 GL26106-PA 1..110 11..120 421 75.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23655-PA 256 GA23655-PA 1..253 11..265 932 69.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24532-PA 276 GM24532-PA 9..276 1..268 1383 96.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12603-PA 276 GD12603-PA 9..276 1..268 1402 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11671-PA 275 GJ11671-PA 9..275 1..268 953 65.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10584-PA 257 GK10584-PA 1..257 11..268 733 57.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20005-PA 275 GE20005-PA 9..275 1..268 1305 91 Plus

MIP03822.hyp Sequence

Translation from 0 to 806

> MIP03822.hyp
TGFVFNVDDYMELRSKHRIMGAPVGTANTKGWSPNQSTLPVELSKFETQL
LLDENIAKLVDKSKDLKAKPTAEKLEECKADFESRLLGQEEALKTEKLRE
TERYMDKILTGKRKKLLKQGKNELAAALTDKDVLLEMSVNFKFDRQNALL
EVHCEHPTDHSAQIVTGPIVHTNSLKYRVFKDLWRRGKYVTSGDAFGADF
LVYPGDPMIYHASHIVILHEQPVIKPLELIAKVRLSVIVNKSCVFAYEME
NNEEEIHYQTVAWCNLGK*

MIP03822.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG33260-PC 276 CG33260-PC 9..276 1..268 1394 100 Plus