Clone MIP03836 Report

Search the DGRC for MIP03836

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:38
Well:36
Vector:pOT2
Associated Gene/TranscriptCG33672-RA
Protein status:MIP03836.pep: gold
Sequenced Size:1262

Clone Sequence Records

MIP03836.complete Sequence

1262 bp assembled on 2009-03-19

GenBank Submission: BT072941.1

> MIP03836.complete
CACACAACCACTCCATCACCTCGTTTCGTTTGAAAAAAAAACCATCCAAA
ATGAGTAAATACGACTCAAAGTACCTCGAGGAGAAGCTCAAACGGGAACT
GCAGACGGAGTACGTGAGTGTTACGGACGAATCAGACGGCTGTGGCGGCA
AGTTCAGCGCCGTAATCGTATCGCCAGCCTTCAGCGGCAAGACCCTTCTC
CAGAAGCATAGATTAGTTAACTCAACGCTTGCCGAAGAACTGAAAGAAAT
CCATGCATTCTCCCAGAAATCCTACACACCCGAAGAGTGGGAGAAAGTGA
AAGCCCAATAGTAGTACCGAATAAAAAAAAACCAACAACACACATACATA
TACACGAGCGATACAACAACAGCAAACACTAGCCGCAAAAACCTGTTGTT
CGTTTTGCTGATGGTTGCGCTTTCCGATCGAAGAGACGAACAAGCCGAAA
AACGCCAGTCGCACAAAGAAAGTGAAAGGGAAAGCACAGGAATCGGCAGC
CAGAAATAGGAGTTACCGAATAAACAACGCAAATGATCCACTAAATGCAT
AAGTTACATAAAGAAATACAGCCATAAAAGTTTAACTACTTGTCGCAGGT
CGTCCACTCGAAAGGCATTAGCATTACAATTCGAAACAGCTGATAAACCG
ATAAAGCCATAGCCAAACGGAATACAGAACACACAATACACGGAGATCAT
CAAGAACAATGCTCAAGTTCCAGGTCCATTCTCCGGGCAAGGTCATACTC
CATGGCGAACACGCCGTGGTCTATCATCGTCCCGCCCTCGCCGCCGTAGT
GGGTTTGGGCACTACTCTGAGATTTCGGCAGCTGGAGGACAGCCAGGTGG
CAAGTTTTCAACTGGAGGCCCTTAACTGCACACTGGAGATCCAGTTGCCG
GAGTTCAATGGATTTTTGGCTGAATTTAGGAGTAAATACCCATCAGATAG
CACGGCCAATCTGTTGGAAGCCGTCCGCGCAGAGGTGTCCAAACAACTTG
AACGATCCGGAGGCAATGCACCGAAGCAGCACACCCAGCGGGCATTCATC
TCCATATACTATTTGCTGGCCGGCGCTGTACTCTCCGCACCCGGCGACAA
GAAACTGACGCTGCAAACCGGTTTCCAGGTGCAGGTAGACAGCCAGCTAA
CCGTGGGTGCGGGTTTGGGCAGTTCCGCCTCTTTCGGAGCAGCTTTGTAA
TAAACCCATATATGCCACCAATTGAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

MIP03836.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG33672-RA 1999 CG33672-RA 28..1224 1..1197 5985 100 Plus
CG33671-RA 1999 CG33671-RA 28..1224 1..1197 5985 100 Plus
spt4-RA 2430 spt4-RA 1327..2430 1197..94 5520 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8522196..8523390 1197..1 5890 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:02:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12634938..12636134 1197..1 5985 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12636137..12637333 1197..1 5985 100 Minus
Blast to na_te.dros performed 2019-03-16 10:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
blood 7410 blood BLOOD 7410bp 370..402 1224..1192 138 90.9 Minus
blood 7410 blood BLOOD 7410bp 7382..7410 1224..1196 136 96.6 Minus
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 1084..1171 4..92 127 61.8 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1412..1481 314..381 119 67.1 Plus

MIP03836.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:10:41 Download gff for MIP03836.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8522196..8523390 1..1197 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:07:29 Download gff for MIP03836.complete
Subject Subject Range Query Range Percent Splice Strand
CG33671-RA 1..489 709..1197 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:41:22 Download gff for MIP03836.complete
Subject Subject Range Query Range Percent Splice Strand
CG33671-RA 1..489 709..1197 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:13:20 Download gff for MIP03836.complete
Subject Subject Range Query Range Percent Splice Strand
CG33671-RA 1..489 709..1197 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:58:23 Download gff for MIP03836.complete
Subject Subject Range Query Range Percent Splice Strand
CG33671-RA 1..489 709..1197 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-03-19 15:20:21 Download gff for MIP03836.complete
Subject Subject Range Query Range Percent Splice Strand
CG33672-RA 28..1224 1..1197 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:41:22 Download gff for MIP03836.complete
Subject Subject Range Query Range Percent Splice Strand
CG33672-RA 28..1224 1..1197 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:20 Download gff for MIP03836.complete
Subject Subject Range Query Range Percent Splice Strand
CG33672-RA 8..1204 1..1197 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:58:23 Download gff for MIP03836.complete
Subject Subject Range Query Range Percent Splice Strand
CG33671-RA 8..1204 1..1197 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:10:41 Download gff for MIP03836.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12634938..12636134 1..1197 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:10:41 Download gff for MIP03836.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12634938..12636134 1..1197 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:10:41 Download gff for MIP03836.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12634938..12636134 1..1197 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:20 Download gff for MIP03836.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8522443..8523639 1..1197 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:15:53 Download gff for MIP03836.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12636137..12637333 1..1197 100   Minus

MIP03836.pep Sequence

Translation from 50 to 310

> MIP03836.pep
MSKYDSKYLEEKLKRELQTEYVSVTDESDGCGGKFSAVIVSPAFSGKTLL
QKHRLVNSTLAEELKEIHAFSQKSYTPEEWEKVKAQ*

MIP03836.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19772-PA 91 GF19772-PA 1..86 1..86 323 70.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22564-PA 86 GG22564-PA 1..86 1..86 442 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20705-PA 87 GH20705-PA 1..86 1..86 358 79.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG33672-PA 86 CG33672-PA 1..86 1..86 438 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19066-PA 86 GI19066-PA 1..86 1..86 367 81.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11190-PA 89 GL11190-PA 1..83 1..83 376 84.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17237-PA 89 GA17237-PA 1..83 1..83 376 84.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20347-PA 86 GM20347-PA 1..86 1..86 446 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25826-PA 86 GD25826-PA 1..86 1..86 446 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20037-PA 89 GJ20037-PA 1..86 1..86 359 79.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19316-PA 88 GK19316-PA 1..86 1..86 375 82.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13434-PA 86 GE13434-PA 1..86 1..86 446 100 Plus

MIP03836.hyp Sequence

Translation from 708 to 1197

> MIP03836.hyp
MLKFQVHSPGKVILHGEHAVVYHRPALAAVVGLGTTLRFRQLEDSQVASF
QLEALNCTLEIQLPEFNGFLAEFRSKYPSDSTANLLEAVRAEVSKQLERS
GGNAPKQHTQRAFISIYYLLAGAVLSAPGDKKLTLQTGFQVQVDSQLTVG
AGLGSSASFGAAL

MIP03836.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG33671-PB 390 CG33671-PB 1..163 1..163 813 100 Plus
CG33671-PA 390 CG33671-PA 1..163 1..163 813 100 Plus