Clone MIP03842 Report

Search the DGRC for MIP03842

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:38
Well:42
Vector:pOT2
Associated Gene/TranscriptCG33785-RA
Protein status:MIP03842.pep: gold
Sequenced Size:1239

Clone Sequence Records

MIP03842.complete Sequence

1239 bp assembled on 2009-04-30

GenBank Submission: BT082095.2

> MIP03842.complete
ACAGCGCGGATTCGGATTCTCCGAAACTATGTTGTTTTTCTGCCCGTCGT
GCGGAAATATATTGATTATCGAGGAAGACACCAACTGCCATCGCTTCACG
TGCAACACCTGCCCGTACATATCGAAGATCAGGCGCAAGATCTCCACGAA
AACCTTTCCACGCCTCAAGGAGGTGGATCACGTGCTGGGCGGCAAGGCGG
CGTGGGAGAACGTAGACTCCACGGACGCAGAGTGTCCAACGTGCGGCCAT
AAGCGGGCGTACTTTATGCAAATCCAGACGCGGTCGGCGGATGAGCCCAT
GACCACGTTTTACAAGTGCTGCAACCACGAGTGCAACCACACCTGGCGAG
ACTAATGCGCCGCCTTCAAACGAGCCTTTATCGACTGCTCCGTGCTCACC
ACACATCCAGCAGAATGCAGCACCAAGCGAGCGAGCTGAGGACTCCAGTG
TGCGCGGTGGGCGACGAGGCTGCTCTCCAGTTGGCCCGCCAGTGCCTGCT
TGGTGGCCAAGTGATTGCCCTGCCCACCGATACCGTGTATGGCCTGGCCT
GCGATGCCAACAACGAGACAGCCATACAGCAGCTCTACGAGATTAAGGGT
CGCGATGAACACAAGCCCGTGGCCATCTGCGTTCACAACATCGATGCGTT
GCGACGCTTTGGTCAGGCTGCCCATCTCAGCGACGAGCTGCTAACTCGTT
TGCTCCCGGGCCCCCTGACCATCGTGATCGAGCGGACGTCCCAGCTGAGC
AACCGTTTCCTTAATCCCAGCACCTCCAAAATCGGCATACGCATTCCGGA
CTTCAACTTCATGCGCGACCTGTGCGCCGTGTGGCAGGAGAAGCCCCTGG
CCCTGACCAGCGCCAATCGCTCCAGTGCGCCCAGCAGTCTGCAGGTGTCC
GAGTTCCGTTCCCTATGGCCCCAATTGGGCGCCGTCTTCGATGCCGGTCG
AATCGGTCTGACCGAGGAGCGACGACTGGCCTCCACGGTCATTGACCTGG
CCACTCCTGGCTACTATGAAATAGTGCGCGCCGGCGTGGCTCTCAAGCCG
ACACTCAGCCTCATGGAGGAGTTCGGCATTCGGGAGCTAAAAATGATGTA
GTATAAGAGCTATTCCTTTGGCTTTAACTTTAATTTTTACTTTGGAACAT
CCTACTTTGCTTTGCATGCGGGAACACAACAAATTGTTTATAAAATATAC
GGTTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP03842.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG33786-RA 1245 CG33786-RA 29..1235 1..1207 6020 99.9 Plus
CG33785-RA 1246 CG33785-RA 29..1235 1..1207 6020 99.9 Plus
CG11110-RA 761 CG11110-RA 697..761 1207..1143 325 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16529183..16530222 1207..168 5200 100 Minus
chr2R 21145070 chr2R 16530295..16530464 170..1 835 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:02:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20642471..20643510 1207..168 5200 100 Minus
2R 25286936 2R 20643583..20643752 170..1 835 99.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20643670..20644709 1207..168 5200 100 Minus
2R 25260384 2R 20644782..20644951 170..1 835 99.4 Minus
Blast to na_te.dros performed on 2019-03-16 20:15:37 has no hits.

MIP03842.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:16:35 Download gff for MIP03842.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16529183..16530220 170..1207 100 <- Minus
chr2R 16530296..16530464 1..169 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:51:34 Download gff for MIP03842.complete
Subject Subject Range Query Range Percent Splice Strand
CG33786-RA 1..747 355..1101 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:46:49 Download gff for MIP03842.complete
Subject Subject Range Query Range Percent Splice Strand
CG33786-RA 1..747 355..1101 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:04:03 Download gff for MIP03842.complete
Subject Subject Range Query Range Percent Splice Strand
CG33786-RA 1..747 355..1101 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:55:58 Download gff for MIP03842.complete
Subject Subject Range Query Range Percent Splice Strand
CG33786-RA 1..747 355..1101 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-30 18:43:27 Download gff for MIP03842.complete
Subject Subject Range Query Range Percent Splice Strand
CG33785-RA 29..1235 1..1207 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:46:48 Download gff for MIP03842.complete
Subject Subject Range Query Range Percent Splice Strand
CG33786-RA 29..1235 1..1207 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:04:03 Download gff for MIP03842.complete
Subject Subject Range Query Range Percent Splice Strand
CG33785-RA 34..1240 1..1207 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:58 Download gff for MIP03842.complete
Subject Subject Range Query Range Percent Splice Strand
CG33786-RA 34..1240 1..1207 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:35 Download gff for MIP03842.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20643584..20643752 1..169 99   Minus
2R 20642471..20643508 170..1207 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:35 Download gff for MIP03842.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20643584..20643752 1..169 99   Minus
2R 20642471..20643508 170..1207 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:35 Download gff for MIP03842.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20643584..20643752 1..169 99   Minus
2R 20642471..20643508 170..1207 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:04:03 Download gff for MIP03842.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16529976..16531013 170..1207 100 <- Minus
arm_2R 16531089..16531257 1..169 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:32:36 Download gff for MIP03842.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20643670..20644707 170..1207 100 <- Minus
2R 20644783..20644951 1..169 99   Minus

MIP03842.pep Sequence

Translation from 1 to 354

> MIP03842.pep
QRGFGFSETMLFFCPSCGNILIIEEDTNCHRFTCNTCPYISKIRRKISTK
TFPRLKEVDHVLGGKAAWENVDSTDAECPTCGHKRAYFMQIQTRSADEPM
TTFYKCCNHECNHTWRD*

MIP03842.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12752-PA 342 GF12752-PA 1..101 10..110 534 93.1 Plus
Dana\GF16163-PA 129 GF16163-PA 12..127 3..115 142 31.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20841-PA 108 GG20841-PA 1..108 10..117 575 97.2 Plus
Dere\GG16847-PA 129 GG16847-PA 12..127 3..115 141 31.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19894-PA 108 GH19894-PA 1..108 10..117 530 88.9 Plus
Dgri\GH18685-PA 129 GH18685-PA 12..127 3..115 142 31.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG33785-PA 108 CG33785-PA 1..108 10..117 621 100 Plus
RpII15-PC 129 CG3284-PC 20..129 13..117 157 30.9 Plus
RpII15-PB 129 CG3284-PB 20..129 13..117 157 30.9 Plus
RpII15-PA 129 CG3284-PA 20..129 13..117 157 30.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19850-PA 108 GI19850-PA 1..108 10..117 535 88.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17434-PA 335 GL17434-PA 1..100 10..109 526 94 Plus
Dper\GL23270-PA 129 GL23270-PA 12..127 3..115 141 31.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17233-PA 335 GA17233-PA 1..100 10..109 526 94 Plus
Dpse\GA17176-PA 129 GA17176-PA 12..127 3..115 141 31.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19771-PA 325 GM19771-PA 1..104 10..113 533 92.3 Plus
Dsec\GM24158-PA 129 GM24158-PA 12..127 3..115 141 31.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25260-PA 108 GD25260-PA 1..108 10..117 586 100 Plus
Dsim\GD18953-PA 129 GD18953-PA 12..127 3..115 141 31.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18820-PA 108 GJ18820-PA 1..108 10..117 537 89.8 Plus
Dvir\GJ14413-PA 129 GJ14413-PA 12..127 3..115 143 31.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21590-PA 108 GK21590-PA 1..108 10..117 525 87 Plus
Dwil\GK11344-PA 129 GK11344-PA 12..127 3..115 141 31.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13781-PA 108 GE13781-PA 1..108 10..117 577 98.1 Plus
Dyak\GE24228-PA 129 GE24228-PA 12..127 3..115 141 31.4 Plus

MIP03842.hyp Sequence

Translation from 354 to 1100

> MIP03842.hyp
MRRLQTSLYRLLRAHHTSSRMQHQASELRTPVCAVGDEAALQLARQCLLG
GQVIALPTDTVYGLACDANNETAIQQLYEIKGRDEHKPVAICVHNIDALR
RFGQAAHLSDELLTRLLPGPLTIVIERTSQLSNRFLNPSTSKIGIRIPDF
NFMRDLCAVWQEKPLALTSANRSSAPSSLQVSEFRSLWPQLGAVFDAGRI
GLTEERRLASTVIDLATPGYYEIVRAGVALKPTLSLMEEFGIRELKMM*

MIP03842.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG33786-PA 248 CG33786-PA 1..248 1..248 1259 100 Plus