MIP03860.complete Sequence
770 bp assembled on 2009-02-05
GenBank Submission: BT058065.1
> MIP03860.complete
CAGAACAGGCAAGCAAACTCACTTTTGGGAGGGGCTGCAAAAGTGTGTGG
GGGGGGGGGGGGTCGGAAGGACATGCCAGGCTGAAACAAGCACAAACCAA
TATAAACATACACACACACACATACAGAGCGCAACAGTGAAAACGCTTCG
CAAGATTAATGAACGTACAAAAGTTTAGAGACAATGACGACGCCGGCGAC
AACAGACAAGAACAACGACAACAACACCAGTAGCAACACCAACAACAACA
GCAGCAACAAGAAGTCCAACGAAAGCCGGCAACAACAACGTGACATGGCC
AGGACAACAACAATGGCAGCCGGAAAAGCGTCGGGAAAAATGAGGGAGGA
AAATATATGGCATACACTTAGGCGCGCCAAGTCGCTTACTGACTTTTTGC
CTATCTCGCCCGCCCGATTTCCCCCATTTTCCGCCTTTCCCCCCCATCCA
CCCCTCGGTGCACCACACTGGAGCGATACAGTGTGTGCATTGGCCTAGGT
CAGCGGATCGGAATGTGAATGTTTGGGGTCGTGCTCCAGTGATTGTCCAG
CAGACAGCAGATGAAGGACACTCGAACATTCCCCGGACCGTACTTAAGTG
GGTTTCGTTGGGTGACAAGAGGCCACTCTTTCGAATGCTAATGAAATCAG
CGCTAAATGCATAACTAAATTGGCTTCAACCAAATGTGTTAGAATGGATA
AACATTCTTGGTTCCTTCAAGTTCAAAAATAAAAACCAATCATCACGCTT
TTGAAAAAAAAAAAAAAAAA
MIP03860.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:22:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40341-RB | 754 | CG40341-RB | 1..754 | 1..753 | 3730 | 99.8 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:09:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 20246454..20246838 | 1..384 | 1875 | 99.7 | Plus |
chr2L | 23010047 | chr2L | 20246918..20247287 | 384..753 | 1835 | 99.7 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:02:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20248039..20248423 | 1..384 | 1875 | 99.7 | Plus |
2L | 23513712 | 2L | 20248503..20248878 | 384..759 | 1865 | 99.7 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:39:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20248039..20248423 | 1..384 | 1885 | 99.7 | Plus |
2L | 23513712 | 2L | 20248503..20248878 | 384..759 | 1865 | 99.7 | Plus |
Blast to na_te.dros performed on 2019-03-15 17:09:30 has no hits.
MIP03860.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:10:11 Download gff for
MIP03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 20246454..20246652 | 1..198 | 99 | == | Plus |
chr2L | 20246715..20246838 | 261..384 | 100 | -> | Plus |
chr2L | 20246919..20247287 | 385..753 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:05:14 Download gff for
MIP03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40341-RA | 1..205 | 184..388 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:34:06 Download gff for
MIP03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40341-RB | 1..315 | 184..498 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:16:27 Download gff for
MIP03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40341-RB | 1..315 | 184..498 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-05 16:49:04 Download gff for
MIP03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40341-RA | 1..205 | 184..388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:34:06 Download gff for
MIP03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40341-RB | 1..315 | 184..498 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:16:27 Download gff for
MIP03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40341-RB | 1..754 | 1..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:10:11 Download gff for
MIP03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20248039..20248423 | 1..384 | 99 | -> | Plus |
2L | 20248504..20248872 | 385..753 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:10:11 Download gff for
MIP03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20248039..20248423 | 1..384 | 99 | -> | Plus |
2L | 20248504..20248872 | 385..753 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:10:11 Download gff for
MIP03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20248039..20248423 | 1..384 | 99 | -> | Plus |
2L | 20248504..20248872 | 385..753 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:16:27 Download gff for
MIP03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20248039..20248423 | 1..384 | 99 | -> | Plus |
arm_2L | 20248504..20248872 | 385..753 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:07:25 Download gff for
MIP03860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20248039..20248423 | 1..384 | 99 | -> | Plus |
2L | 20248504..20248872 | 385..753 | 100 | | Plus |
MIP03860.hyp Sequence
Translation from 183 to 497
> MIP03860.hyp
MTTPATTDKNNDNNTSSNTNNNSSNKKSNESRQQQRDMARTTTMAAGKAS
GKMREENIWHTLRRAKSLTDFLPISPARFPPFSAFPPHPPLGAPHWSDTV
CALA*
Sequence MIP03860.hyp has no blast hits.
MIP03860.pep Sequence
Translation from 183 to 497
> MIP03860.pep
MTTPATTDKNNDNNTSSNTNNNSSNKKSNESRQQQRDMARTTTMAAGKAS
GKMREENIWHTLRRAKSLTDFLPISPARFPPFSAFPPHPPLGAPHWSDTV
CALA*
MIP03860.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG21224-PA | 77 | GG21224-PA | 1..77 | 1..77 | 247 | 81.8 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM23340-PA | 119 | GM23340-PA | 29..66 | 30..67 | 186 | 94.7 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD24249-PA | 143 | GD24249-PA | 35..72 | 30..67 | 185 | 94.7 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:39:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE13301-PA | 124 | GE13301-PA | 31..71 | 27..67 | 184 | 87.8 | Plus |