Clone MIP03860 Report

Search the DGRC for MIP03860

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:38
Well:60
Vector:pOT2
Associated Gene/TranscriptCG40341-RB
Protein status:MIP03860.pep: wuzgold
Sequenced Size:770

Clone Sequence Records

MIP03860.complete Sequence

770 bp assembled on 2009-02-05

GenBank Submission: BT058065.1

> MIP03860.complete
CAGAACAGGCAAGCAAACTCACTTTTGGGAGGGGCTGCAAAAGTGTGTGG
GGGGGGGGGGGGTCGGAAGGACATGCCAGGCTGAAACAAGCACAAACCAA
TATAAACATACACACACACACATACAGAGCGCAACAGTGAAAACGCTTCG
CAAGATTAATGAACGTACAAAAGTTTAGAGACAATGACGACGCCGGCGAC
AACAGACAAGAACAACGACAACAACACCAGTAGCAACACCAACAACAACA
GCAGCAACAAGAAGTCCAACGAAAGCCGGCAACAACAACGTGACATGGCC
AGGACAACAACAATGGCAGCCGGAAAAGCGTCGGGAAAAATGAGGGAGGA
AAATATATGGCATACACTTAGGCGCGCCAAGTCGCTTACTGACTTTTTGC
CTATCTCGCCCGCCCGATTTCCCCCATTTTCCGCCTTTCCCCCCCATCCA
CCCCTCGGTGCACCACACTGGAGCGATACAGTGTGTGCATTGGCCTAGGT
CAGCGGATCGGAATGTGAATGTTTGGGGTCGTGCTCCAGTGATTGTCCAG
CAGACAGCAGATGAAGGACACTCGAACATTCCCCGGACCGTACTTAAGTG
GGTTTCGTTGGGTGACAAGAGGCCACTCTTTCGAATGCTAATGAAATCAG
CGCTAAATGCATAACTAAATTGGCTTCAACCAAATGTGTTAGAATGGATA
AACATTCTTGGTTCCTTCAAGTTCAAAAATAAAAACCAATCATCACGCTT
TTGAAAAAAAAAAAAAAAAA

MIP03860.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG40341-RB 754 CG40341-RB 1..754 1..753 3730 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20246454..20246838 1..384 1875 99.7 Plus
chr2L 23010047 chr2L 20246918..20247287 384..753 1835 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:02:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20248039..20248423 1..384 1875 99.7 Plus
2L 23513712 2L 20248503..20248878 384..759 1865 99.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20248039..20248423 1..384 1885 99.7 Plus
2L 23513712 2L 20248503..20248878 384..759 1865 99.7 Plus
Blast to na_te.dros performed on 2019-03-15 17:09:30 has no hits.

MIP03860.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:10:11 Download gff for MIP03860.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20246454..20246652 1..198 99 == Plus
chr2L 20246715..20246838 261..384 100 -> Plus
chr2L 20246919..20247287 385..753 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:05:14 Download gff for MIP03860.complete
Subject Subject Range Query Range Percent Splice Strand
CG40341-RA 1..205 184..388 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:34:06 Download gff for MIP03860.complete
Subject Subject Range Query Range Percent Splice Strand
CG40341-RB 1..315 184..498 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:16:27 Download gff for MIP03860.complete
Subject Subject Range Query Range Percent Splice Strand
CG40341-RB 1..315 184..498 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-05 16:49:04 Download gff for MIP03860.complete
Subject Subject Range Query Range Percent Splice Strand
CG40341-RA 1..205 184..388 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:34:06 Download gff for MIP03860.complete
Subject Subject Range Query Range Percent Splice Strand
CG40341-RB 1..315 184..498 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:16:27 Download gff for MIP03860.complete
Subject Subject Range Query Range Percent Splice Strand
CG40341-RB 1..754 1..753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:10:11 Download gff for MIP03860.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20248039..20248423 1..384 99 -> Plus
2L 20248504..20248872 385..753 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:10:11 Download gff for MIP03860.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20248039..20248423 1..384 99 -> Plus
2L 20248504..20248872 385..753 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:10:11 Download gff for MIP03860.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20248039..20248423 1..384 99 -> Plus
2L 20248504..20248872 385..753 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:16:27 Download gff for MIP03860.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20248039..20248423 1..384 99 -> Plus
arm_2L 20248504..20248872 385..753 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:07:25 Download gff for MIP03860.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20248039..20248423 1..384 99 -> Plus
2L 20248504..20248872 385..753 100   Plus

MIP03860.hyp Sequence

Translation from 183 to 497

> MIP03860.hyp
MTTPATTDKNNDNNTSSNTNNNSSNKKSNESRQQQRDMARTTTMAAGKAS
GKMREENIWHTLRRAKSLTDFLPISPARFPPFSAFPPHPPLGAPHWSDTV
CALA*
Sequence MIP03860.hyp has no blast hits.

MIP03860.pep Sequence

Translation from 183 to 497

> MIP03860.pep
MTTPATTDKNNDNNTSSNTNNNSSNKKSNESRQQQRDMARTTTMAAGKAS
GKMREENIWHTLRRAKSLTDFLPISPARFPPFSAFPPHPPLGAPHWSDTV
CALA*

MIP03860.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21224-PA 77 GG21224-PA 1..77 1..77 247 81.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23340-PA 119 GM23340-PA 29..66 30..67 186 94.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24249-PA 143 GD24249-PA 35..72 30..67 185 94.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13301-PA 124 GE13301-PA 31..71 27..67 184 87.8 Plus