Clone MIP03875 Report

Search the DGRC for MIP03875

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:38
Well:75
Vector:pOT2
Associated Gene/TranscriptCG43164-RC
Protein status:MIP03875.pep: gold
Sequenced Size:1978

Clone Sequence Records

MIP03875.complete Sequence

1978 bp assembled on 2009-04-29

GenBank Submission: BT082097.1

> MIP03875.complete
GCGACGTGAAGTGCTGAACTCTCCAAACTCTACGAACTCCAAACACTTCT
TCTTTGGAGCCACCTCGATCGCGCGTCCCCAAAACGCTGAGAACCCGATT
CGTATTCCCCGATCGTCGCCAGTGGCAATTAGATAGTGCTCCGCGCTCCC
ACCAATCCAACCCATTCGAAGCAAAGATGGCCAAAATCGTACTCTTCTGC
CTGCTGAGCCTCTTGGCATGCGCTGCAGGTCAACGCATTACGACAATCCA
CCTGGATGGAGTGCAGTACTTCATCAGCCGAATGAATCCCTACTCCCCGG
AGCTCAACTACTTCCTGGCCTACCAGTACTGTCGCTCCCTGGGCCTGCAA
CTGGCCTCCTTTGAGACGAAGGAGAAGGCCGAGTCGATGACCACGTATCT
GAAGAATGCCGGTTACGGCAACTACGATTTCTGGACCTCCGGCAATCGCC
TGGGCACGGGCATGTTCCTATGGATGAGCACTGGTCTGCCGTTTAACGCC
ACTTTTGATTTCTTCGAAAACTCGGCGGACGCCATCCAGGCCGGTCTGCT
CGATCCCGTCGATCATAATAGCAACACCTCACCCCAGCGCACCGCTCGCG
ACAGCAGCAGTGGCGCCGAGAAGGGATGCGTGATCCTGAAGCAGCCCACG
CTCAAGTGGATGCCCGAGGACTGCTCGGCCGTGAAGGACTTCATTTGTGA
GCAGACCCGCTGCTACTACTACAACTACGGCAGCATCCCCGTCTCGTCGG
CGCAGGGACGTCCCATCACCTCCACCACCCCAAGGACTCCTGCCTCCCTG
ATGAACCTGCATGTGGCCGCCACCACCACACCCTTGCCCCTGCTGATGTC
CACCAGTGGAGCAATGTACACCGCTGCCAAGGCCAAATCTTCGCCAGCCG
TTGGCCACCGACTGATCGATGATTCCAGCTCCCAGCAGCAACCCTCGTTT
ATGTCCTTTAAGCTGAACCATGATCGCTCGCTGCCCGATACGGATTCCAC
TGACGTGGATGTGGAGGATCAGGAAGCGGATTTGGATGGCGAGGAGCACG
ATGACCATGAGGCCGAGGGCGAAGAGGAGCATGACGAGCACGACAACTTC
GAGGAGCATGCCCGTGAGCTGAGCAACGACAACGATGGCGATATCAAGGA
GCACGTATTCCCACTGAGCGACAACGAACTCCACCCCGAGGTGCATTCGA
TCGAAGAGGTACAGCAGCAGTTGCAGCAGGAGGATGCGGATGCGGACTCG
GCACCAGCTCCCGCGGCGGCTGAGGATAACGAGAGCTCGCAACACGATGC
GGAGGCGGATGGAGAGCACGAGCAGGATGGAGCTGAGGGCGAGACTGACT
TGGAAAATGAGACGCCGGTGGATCTTATCAAGGCCAACGAACCATTGGCG
ATGCCCAGCTCCACTGAATCCCCAGCCGCCGCCATCGAGGAGCGCATCAA
GCAGATCGCCCAGGACTTCCAGAAAATGGCCAGCTCCCAGGAGCTGCAGC
CCAAGGAGGAGCTGACCCCCCAATCCTCCCTGTCACTCAACGATCTGATA
CGCACCCTGCGGCCCAACGAACAGCAGATCATTCCGCAGATCGATTCGGA
CTACTCCAATGCCATGCGTGTCCTCGGCAAGCCAATGGCGGCCAATAACT
AGGCATCTCCTTTCCCACGAATGCCACTAGCCTAAGTTGTGTGTGTGTTT
GGGTCGAGGTGTTATCCAGCCGGGCATCCGGGTTCCACTGAGGAATGGCC
ATTTTCGAGAGCCGGCCGGACATGTCCGAAAATGACGCTTCTCTCTGAGG
ACCTCGATGCCAATGGATGACCGCGCTGAAATGCAGCGAGAGATTAAAGG
AGCTAAGACATTAATCTATATATAAATATATATGTATTGTATGCTTTAAT
TGTATGACAACCACCACAAAAAAAAGGAAACTCTTGATTAATAAACGTAA
TAAGTAAATAAAAAAAAAAAAAAAAAAA

MIP03875.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
MB8.b 2007 MB8.b 356..2007 1..1652 8260 100 Plus
CG18431-RA 2401 CG18431-RA 1197..2401 757..1961 6025 100 Plus
CG4844-RA 2401 CG4844-RA 1197..2401 757..1961 6025 100 Plus
CG18431-RA 2401 CG18431-RA 6..762 1..757 3785 100 Plus
CG4844-RA 2401 CG4844-RA 6..762 1..757 3785 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13394508..13395711 757..1959 5760 98.8 Plus
chr2R 21145070 chr2R 13392699..13393076 227..604 1890 100 Plus
chr2R 21145070 chr2R 13389797..13390026 1..230 1150 100 Plus
chr2R 21145070 chr2R 13393219..13393375 601..757 785 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:02:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17507443..17508647 757..1961 6025 100 Plus
2R 25286936 2R 17505634..17506011 227..604 1890 100 Plus
2R 25286936 2R 17502733..17502962 1..230 1150 100 Plus
2R 25286936 2R 17506154..17506310 601..757 785 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17508642..17509846 757..1961 6025 100 Plus
2R 25260384 2R 17506833..17507210 227..604 1890 100 Plus
2R 25260384 2R 17503932..17504161 1..230 1150 100 Plus
2R 25260384 2R 17507353..17507509 601..757 785 100 Plus
Blast to na_te.dros performed on 2019-03-15 23:18:27 has no hits.

MIP03875.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:19:09 Download gff for MIP03875.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13389797..13390024 1..228 100 -> Plus
chr2R 13392701..13393076 229..604 100 -> Plus
chr2R 13393223..13393375 605..757 100 -> Plus
chr2R 13394509..13395711 758..1959 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:51:21 Download gff for MIP03875.complete
Subject Subject Range Query Range Percent Splice Strand
CG4844-RB 1..852 801..1652 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:49:55 Download gff for MIP03875.complete
Subject Subject Range Query Range Percent Splice Strand
CG4844-RB 1..852 801..1652 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:37:40 Download gff for MIP03875.complete
Subject Subject Range Query Range Percent Splice Strand
CG43164-RC 1..1476 177..1652 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:28:43 Download gff for MIP03875.complete
Subject Subject Range Query Range Percent Splice Strand
CG43164-RC 1..1476 177..1652 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-29 18:38:04 Download gff for MIP03875.complete
Subject Subject Range Query Range Percent Splice Strand
CG4844-RB 193..1395 757..1959 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:49:55 Download gff for MIP03875.complete
Subject Subject Range Query Range Percent Splice Strand
CG18431-RB 6..759 1..757 99 -> Plus
CG18431-RB 1195..2396 758..1959 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:37:40 Download gff for MIP03875.complete
Subject Subject Range Query Range Percent Splice Strand
CG43164-RC 380..2338 1..1959 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:28:43 Download gff for MIP03875.complete
Subject Subject Range Query Range Percent Splice Strand
CG43164-RC 380..2338 1..1959 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:19:09 Download gff for MIP03875.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17506158..17506310 605..757 100 -> Plus
2R 17502733..17502960 1..228 100 -> Plus
2R 17505636..17506011 229..604 100 -> Plus
2R 17507444..17508645 758..1959 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:19:09 Download gff for MIP03875.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17506158..17506310 605..757 100 -> Plus
2R 17502733..17502960 1..228 100 -> Plus
2R 17505636..17506011 229..604 100 -> Plus
2R 17507444..17508645 758..1959 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:19:09 Download gff for MIP03875.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17506158..17506310 605..757 100 -> Plus
2R 17502733..17502960 1..228 100 -> Plus
2R 17505636..17506011 229..604 100 -> Plus
2R 17507444..17508645 758..1959 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:37:40 Download gff for MIP03875.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13390238..13390465 1..228 100 -> Plus
arm_2R 13393141..13393516 229..604 100 -> Plus
arm_2R 13393663..13393815 605..757 100 -> Plus
arm_2R 13394949..13396150 758..1959 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:40:49 Download gff for MIP03875.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17507357..17507509 605..757 100 -> Plus
2R 17503932..17504159 1..228 100 -> Plus
2R 17506835..17507210 229..604 100 -> Plus
2R 17508643..17509844 758..1959 100   Plus

MIP03875.hyp Sequence

Translation from 176 to 1651

> MIP03875.hyp
MAKIVLFCLLSLLACAAGQRITTIHLDGVQYFISRMNPYSPELNYFLAYQ
YCRSLGLQLASFETKEKAESMTTYLKNAGYGNYDFWTSGNRLGTGMFLWM
STGLPFNATFDFFENSADAIQAGLLDPVDHNSNTSPQRTARDSSSGAEKG
CVILKQPTLKWMPEDCSAVKDFICEQTRCYYYNYGSIPVSSAQGRPITST
TPRTPASLMNLHVAATTTPLPLLMSTSGAMYTAAKAKSSPAVGHRLIDDS
SSQQQPSFMSFKLNHDRSLPDTDSTDVDVEDQEADLDGEEHDDHEAEGEE
EHDEHDNFEEHARELSNDNDGDIKEHVFPLSDNELHPEVHSIEEVQQQLQ
QEDADADSAPAPAAAEDNESSQHDAEADGEHEQDGAEGETDLENETPVDL
IKANEPLAMPSSTESPAAAIEERIKQIAQDFQKMASSQELQPKEELTPQS
SLSLNDLIRTLRPNEQQIIPQIDSDYSNAMRVLGKPMAANN*

MIP03875.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG43164-PC 491 CG43164-PC 1..491 1..491 2564 100 Plus
CG43164-PE 490 CG43164-PE 1..490 1..491 2548 99.8 Plus
CG43164-PD 194 CG43164-PD 1..194 1..194 1039 100 Plus
CG43164-PA 194 CG18431-PA 1..194 1..194 1039 100 Plus
CG43164-PB 193 CG18431-PB 1..193 1..194 1023 99.5 Plus

MIP03875.pep Sequence

Translation from 176 to 1651

> MIP03875.pep
MAKIVLFCLLSLLACAAGQRITTIHLDGVQYFISRMNPYSPELNYFLAYQ
YCRSLGLQLASFETKEKAESMTTYLKNAGYGNYDFWTSGNRLGTGMFLWM
STGLPFNATFDFFENSADAIQAGLLDPVDHNSNTSPQRTARDSSSGAEKG
CVILKQPTLKWMPEDCSAVKDFICEQTRCYYYNYGSIPVSSAQGRPITST
TPRTPASLMNLHVAATTTPLPLLMSTSGAMYTAAKAKSSPAVGHRLIDDS
SSQQQPSFMSFKLNHDRSLPDTDSTDVDVEDQEADLDGEEHDDHEAEGEE
EHDEHDNFEEHARELSNDNDGDIKEHVFPLSDNELHPEVHSIEEVQQQLQ
QEDADADSAPAPAAAEDNESSQHDAEADGEHEQDGAEGETDLENETPVDL
IKANEPLAMPSSTESPAAAIEERIKQIAQDFQKMASSQELQPKEELTPQS
SLSLNDLIRTLRPNEQQIIPQIDSDYSNAMRVLGKPMAANN*

MIP03875.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13130-PA 194 GF13130-PA 1..194 1..194 1078 99.5 Plus
Dana\GF19831-PA 264 GF19831-PA 1..264 209..491 825 70.1 Plus
Dana\GF24446-PA 386 GF24446-PA 269..382 44..175 157 30.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20689-PA 283 GG20689-PA 1..283 209..491 1143 95.1 Plus
Dere\GG20688-PA 194 GG20688-PA 1..194 1..194 1079 99.5 Plus
Dere\GG14773-PA 376 GG14773-PA 259..372 44..175 153 30.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21408-PA 194 GH21408-PA 1..194 1..194 1080 99 Plus
Dgri\GH21409-PA 280 GH21409-PA 1..257 224..489 508 53.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
nw-PC 491 CG43164-PC 1..491 1..491 2564 100 Plus
nw-PE 490 CG43164-PE 1..490 1..491 2548 99.8 Plus
nw-PD 194 CG43164-PD 1..194 1..194 1039 100 Plus
nw-PA 194 CG18431-PA 1..194 1..194 1039 100 Plus
nw-PB 193 CG18431-PB 1..193 1..194 1023 99.5 Plus
CG12111-PB 188 CG12111-PB 56..128 31..105 150 45.5 Plus
CG12111-PA 188 CG12111-PA 56..128 31..105 150 45.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21026-PA 283 GI21026-PA 15..264 234..488 549 57.8 Plus
Dmoj\GI21025-PA 251 GI21025-PA 201..251 144..194 293 100 Plus
Dmoj\GI13046-PA 379 GI13046-PA 262..375 44..175 154 30.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11431-PA 194 GL11431-PA 1..194 1..194 1080 99 Plus
Dper\GL11432-PA 287 GL11432-PA 1..287 209..491 792 65 Plus
Dper\GL21206-PA 186 GL21206-PA 44..123 24..108 145 41.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24725-PA 194 GA24725-PA 1..194 1..194 1080 99 Plus
Dpse\GA24726-PA 287 GA24726-PA 1..287 209..491 791 65 Plus
Dpse\GA21567-PA 381 GA21567-PA 264..377 44..175 157 30.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21785-PA 194 GM21785-PA 1..194 1..194 1084 100 Plus
Dsec\GM21786-PA 238 GM21786-PA 20..233 195..408 810 93 Plus
Dsec\GM21788-PA 58 GM21788-PA 1..58 434..491 284 96.6 Plus
Dsec\GM14393-PA 375 GM14393-PA 258..371 44..175 153 30.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11277-PA 283 GD11277-PA 1..283 209..491 1456 98.6 Plus
Dsim\GD11276-PA 194 GD11276-PA 1..194 1..194 1084 100 Plus
Dsim\GD13709-PA 276 GD13709-PA 1..245 209..460 813 85.8 Plus
Dsim\GD13601-PA 375 GD13601-PA 258..371 44..175 154 30.9 Plus
Dsim\GD24567-PA 188 GD24567-PA 56..128 31..105 145 45.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21952-PA 194 GJ21952-PA 1..194 1..194 1080 99 Plus
Dvir\GJ21953-PA 274 GJ21953-PA 1..256 224..489 557 55.3 Plus
Dvir\GJ19459-PA 194 GJ19459-PA 55..134 24..105 150 42.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22906-PA 194 GK22906-PA 1..194 1..194 1082 99.5 Plus
Dwil\GK22905-PA 238 GK22905-PA 1..238 259..491 492 56.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\anon-EST:fe2D7-PA 283 GE11673-PA 1..283 209..491 1186 94 Plus
Dyak\GE11672-PA 194 GE11672-PA 1..194 1..194 1084 100 Plus
Dyak\GE21136-PA 379 GE21136-PA 262..375 44..175 152 30.9 Plus
Dyak\GE17444-PA 188 GE17444-PA 56..128 31..105 148 45.5 Plus