Clone MIP04030 Report

Search the DGRC for MIP04030

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:40
Well:30
Vector:pOT2
Associated Gene/TranscriptCG33325-RB
Protein status:MIP04030.pep: gold
Sequenced Size:979

Clone Sequence Records

MIP04030.complete Sequence

979 bp assembled on 2010-05-10

GenBank Submission: BT124893.1

> MIP04030.complete
AAACATTGCTGGTGGTTAGACCAATGAAGATCTGTGCTCAAATAATTGGA
ATTATAGTTTTAGCAAGGCTCCTTAAGGAGGTTGATGGAAAAGGAGAAAT
TTCAGACCTGGAATCTCTGGCCAAGACCGATGCAATGTACACTGCCCTGC
TGAAGGAGATAAATTCAACTTTTCACAAAAGACCGTTGCTGGCAGAAAAA
AATGCAGAGTTCGAAAAGAATTTCCAAACAGTTTTAGTTGCTCTAAACTT
AAGCATGTATGAAATAGCTACCAAAATTGATGTCTACACCGACTTTACAG
TTTACAATCAAATCCGATTAGAACTCGAAAGGGAAATCTTTAAGAAGCTA
CAAGTTGCGGAAAGACTTCAGAAGATGGAAAACCTTATGCCAACGTGTCG
CATCTTCTTTGCCAATCAGCAAGTGCAACTCATTGGCAGTTTCAGTCAAT
CCAACCTCATGAAATTGGAAATATTGAATCATCCGGGTCCAGAGTGCGAA
AATGTTGAAGTGCAAAAAATTTTCATCGCGCCAACTTCATCGACTGCCAG
GCCCGATAACTACGATACAGAGATTCTAAAAGTTTTGGCCAAATACAGGA
CACGTCCGTGGGGAAAAAAGACGTATCGGGATTTCGACGAGAAAATATGG
AACCTTTTTATGGCCATAAACAGCGAAGAGCAAACATTTAAAAAGAACGC
ATTAGCCGCATTCAAAAAATATGACGAAGATCGGGCCATTTTGGACAAAG
CATTGGCACACCGAATTGCAGAATTCGAGAAACAAATTCCGCATGAGACA
AATCCGTGCAGGGTCGATCTAATTCGCTTGAAAAAAGAACTGGGACGCGC
AATGTTTGAAACTACGCAGAAAAAGCACAACAGTTTGGTCGCTACGAACT
ATGTAAAGACTTGTCTCAATAATCAAATAAAATTGTTCTTGGCAATGAAT
GATTTAACATTGTAAAAAAAAAAAAAAAA

MIP04030.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG33325-RA 909 CG33325-RA 54..909 110..965 4280 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4504928..4505781 963..110 4240 99.8 Minus
chr3R 27901430 chr3R 4505923..4506006 84..1 420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8678953..8679809 966..110 4285 100 Minus
3R 32079331 3R 8679951..8680034 84..1 420 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8419784..8420640 966..110 4285 100 Minus
3R 31820162 3R 8420782..8420865 84..1 420 100 Minus
3R 31820162 3R 8420690..8420717 111..84 140 100 Minus
Blast to na_te.dros performed 2019-03-15 21:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
jockey 5020 jockey DMLINEJA 5020bp Derived from M22874 (g157823) (Rel. 47, Last updated, Version 5). 2927..2999 157..227 116 67.6 Plus
Dvir\Tel 2485 Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). 1767..1848 740..660 109 63.9 Minus

MIP04030.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:50:28 Download gff for MIP04030.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4504928..4505780 111..963 99 <- Minus
chr3R 4505832..4505857 85..110 100 <- Minus
chr3R 4505923..4506006 1..84 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-05-10 11:31:18 Download gff for MIP04030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33325-RA 51..907 103..963 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:35:52 Download gff for MIP04030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33325-RA 51..907 103..963 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:59:41 Download gff for MIP04030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33325-RB 1..942 24..965 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:04:03 Download gff for MIP04030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33325-RB 1..942 24..965 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:31:18 Download gff for MIP04030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33325-RA 51..907 103..963 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:35:51 Download gff for MIP04030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33325-RA 51..907 103..963 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:59:41 Download gff for MIP04030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33325-RB 1..963 1..963 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:03 Download gff for MIP04030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33325-RB 1..963 1..963 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:28 Download gff for MIP04030.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8678956..8679808 111..963 100 <- Minus
3R 8679860..8679885 85..110 100 <- Minus
3R 8679951..8680034 1..84 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:28 Download gff for MIP04030.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8678956..8679808 111..963 100 <- Minus
3R 8679860..8679885 85..110 100 <- Minus
3R 8679951..8680034 1..84 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:28 Download gff for MIP04030.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8678956..8679808 111..963 100 <- Minus
3R 8679860..8679885 85..110 100 <- Minus
3R 8679951..8680034 1..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:59:41 Download gff for MIP04030.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4504678..4505530 111..963 100 <- Minus
arm_3R 4505582..4505607 85..110 100 <- Minus
arm_3R 4505673..4505756 1..84 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:09:21 Download gff for MIP04030.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8419787..8420639 111..963 100 <- Minus
3R 8420691..8420716 85..110 100 <- Minus
3R 8420782..8420865 1..84 100   Minus

MIP04030.hyp Sequence

Translation from 0 to 960

> MIP04030.hyp
TLLVVRPMKICAQIIGIIVLARLLKEVDGKGEISDLESLAKTDAMYTALL
KEINSTFHKRPLLAEKNAEFEKNFQTVLVALNLSMYEIATKIDVYTDFTV
YNQIRLELEREIFKKLQVAERLQKMENLMPTCRIFFANQQVQLIGSFSQS
NLMKLEILNHPGPECENVEVQKIFIAPTSSTARPDNYDTEILKVLAKYRT
RPWGKKTYRDFDEKIWNLFMAINSEEQTFKKNALAAFKKYDEDRAILDKA
LAHRIAEFEKQIPHETNPCRVDLIRLKKELGRAMFETTQKKHNSLVATNY
VKTCLNNQIKLFLAMNDLTL

MIP04030.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG33325-PB 313 CG33325-PB 1..313 8..320 1595 100 Plus

MIP04030.pep Sequence

Translation from 2 to 964

> MIP04030.pep
TLLVVRPMKICAQIIGIIVLARLLKEVDGKGEISDLESLAKTDAMYTALL
KEINSTFHKRPLLAEKNAEFEKNFQTVLVALNLSMYEIATKIDVYTDFTV
YNQIRLELEREIFKKLQVAERLQKMENLMPTCRIFFANQQVQLIGSFSQS
NLMKLEILNHPGPECENVEVQKIFIAPTSSTARPDNYDTEILKVLAKYRT
RPWGKKTYRDFDEKIWNLFMAINSEEQTFKKNALAAFKKYDEDRAILDKA
LAHRIAEFEKQIPHETNPCRVDLIRLKKELGRAMFETTQKKHNSLVATNY
VKTCLNNQIKLFLAMNDLTL*

MIP04030.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG33325-PB 313 CG33325-PB 1..313 8..320 1595 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26325-PA 267 GM26325-PA 19..263 37..281 1156 88.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20850-PA 236 GD20850-PA 1..236 85..320 1177 91.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18061-PA 301 GE18061-PA 19..294 37..312 1101 73.9 Plus