Clone Sequence Records
MIP04030.complete Sequence
979 bp assembled on 2010-05-10
GenBank Submission: BT124893.1
> MIP04030.complete
AAACATTGCTGGTGGTTAGACCAATGAAGATCTGTGCTCAAATAATTGGA
ATTATAGTTTTAGCAAGGCTCCTTAAGGAGGTTGATGGAAAAGGAGAAAT
TTCAGACCTGGAATCTCTGGCCAAGACCGATGCAATGTACACTGCCCTGC
TGAAGGAGATAAATTCAACTTTTCACAAAAGACCGTTGCTGGCAGAAAAA
AATGCAGAGTTCGAAAAGAATTTCCAAACAGTTTTAGTTGCTCTAAACTT
AAGCATGTATGAAATAGCTACCAAAATTGATGTCTACACCGACTTTACAG
TTTACAATCAAATCCGATTAGAACTCGAAAGGGAAATCTTTAAGAAGCTA
CAAGTTGCGGAAAGACTTCAGAAGATGGAAAACCTTATGCCAACGTGTCG
CATCTTCTTTGCCAATCAGCAAGTGCAACTCATTGGCAGTTTCAGTCAAT
CCAACCTCATGAAATTGGAAATATTGAATCATCCGGGTCCAGAGTGCGAA
AATGTTGAAGTGCAAAAAATTTTCATCGCGCCAACTTCATCGACTGCCAG
GCCCGATAACTACGATACAGAGATTCTAAAAGTTTTGGCCAAATACAGGA
CACGTCCGTGGGGAAAAAAGACGTATCGGGATTTCGACGAGAAAATATGG
AACCTTTTTATGGCCATAAACAGCGAAGAGCAAACATTTAAAAAGAACGC
ATTAGCCGCATTCAAAAAATATGACGAAGATCGGGCCATTTTGGACAAAG
CATTGGCACACCGAATTGCAGAATTCGAGAAACAAATTCCGCATGAGACA
AATCCGTGCAGGGTCGATCTAATTCGCTTGAAAAAAGAACTGGGACGCGC
AATGTTTGAAACTACGCAGAAAAAGCACAACAGTTTGGTCGCTACGAACT
ATGTAAAGACTTGTCTCAATAATCAAATAAAATTGTTCTTGGCAATGAAT
GATTTAACATTGTAAAAAAAAAAAAAAAA
MIP04030.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33325-RA | 909 | CG33325-RA | 54..909 | 110..965 | 4280 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 4504928..4505781 | 963..110 | 4240 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 4505923..4506006 | 84..1 | 420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8678953..8679809 | 966..110 | 4285 | 100 | Minus |
3R | 32079331 | 3R | 8679951..8680034 | 84..1 | 420 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 8419784..8420640 | 966..110 | 4285 | 100 | Minus |
3R | 31820162 | 3R | 8420782..8420865 | 84..1 | 420 | 100 | Minus |
3R | 31820162 | 3R | 8420690..8420717 | 111..84 | 140 | 100 | Minus |
Blast to na_te.dros performed 2019-03-15 21:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey | 5020 | jockey DMLINEJA 5020bp Derived from M22874 (g157823) (Rel. 47, Last updated, Version 5). | 2927..2999 | 157..227 | 116 | 67.6 | Plus |
Dvir\Tel | 2485 | Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). | 1767..1848 | 740..660 | 109 | 63.9 | Minus |
MIP04030.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:50:28 Download gff for
MIP04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 4504928..4505780 | 111..963 | 99 | <- | Minus |
chr3R | 4505832..4505857 | 85..110 | 100 | <- | Minus |
chr3R | 4505923..4506006 | 1..84 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-05-10 11:31:18 Download gff for
MIP04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33325-RA | 51..907 | 103..963 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:35:52 Download gff for
MIP04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33325-RA | 51..907 | 103..963 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:59:41 Download gff for
MIP04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33325-RB | 1..942 | 24..965 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:04:03 Download gff for
MIP04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33325-RB | 1..942 | 24..965 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:31:18 Download gff for
MIP04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33325-RA | 51..907 | 103..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:35:51 Download gff for
MIP04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33325-RA | 51..907 | 103..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:59:41 Download gff for
MIP04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33325-RB | 1..963 | 1..963 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:03 Download gff for
MIP04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33325-RB | 1..963 | 1..963 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:28 Download gff for
MIP04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8678956..8679808 | 111..963 | 100 | <- | Minus |
3R | 8679860..8679885 | 85..110 | 100 | <- | Minus |
3R | 8679951..8680034 | 1..84 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:28 Download gff for
MIP04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8678956..8679808 | 111..963 | 100 | <- | Minus |
3R | 8679860..8679885 | 85..110 | 100 | <- | Minus |
3R | 8679951..8680034 | 1..84 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:28 Download gff for
MIP04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8678956..8679808 | 111..963 | 100 | <- | Minus |
3R | 8679860..8679885 | 85..110 | 100 | <- | Minus |
3R | 8679951..8680034 | 1..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:59:41 Download gff for
MIP04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4504678..4505530 | 111..963 | 100 | <- | Minus |
arm_3R | 4505582..4505607 | 85..110 | 100 | <- | Minus |
arm_3R | 4505673..4505756 | 1..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:09:21 Download gff for
MIP04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8419787..8420639 | 111..963 | 100 | <- | Minus |
3R | 8420691..8420716 | 85..110 | 100 | <- | Minus |
3R | 8420782..8420865 | 1..84 | 100 | | Minus |
MIP04030.hyp Sequence
Translation from 0 to 960
> MIP04030.hyp
TLLVVRPMKICAQIIGIIVLARLLKEVDGKGEISDLESLAKTDAMYTALL
KEINSTFHKRPLLAEKNAEFEKNFQTVLVALNLSMYEIATKIDVYTDFTV
YNQIRLELEREIFKKLQVAERLQKMENLMPTCRIFFANQQVQLIGSFSQS
NLMKLEILNHPGPECENVEVQKIFIAPTSSTARPDNYDTEILKVLAKYRT
RPWGKKTYRDFDEKIWNLFMAINSEEQTFKKNALAAFKKYDEDRAILDKA
LAHRIAEFEKQIPHETNPCRVDLIRLKKELGRAMFETTQKKHNSLVATNY
VKTCLNNQIKLFLAMNDLTL
MIP04030.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33325-PB | 313 | CG33325-PB | 1..313 | 8..320 | 1595 | 100 | Plus |
MIP04030.pep Sequence
Translation from 2 to 964
> MIP04030.pep
TLLVVRPMKICAQIIGIIVLARLLKEVDGKGEISDLESLAKTDAMYTALL
KEINSTFHKRPLLAEKNAEFEKNFQTVLVALNLSMYEIATKIDVYTDFTV
YNQIRLELEREIFKKLQVAERLQKMENLMPTCRIFFANQQVQLIGSFSQS
NLMKLEILNHPGPECENVEVQKIFIAPTSSTARPDNYDTEILKVLAKYRT
RPWGKKTYRDFDEKIWNLFMAINSEEQTFKKNALAAFKKYDEDRAILDKA
LAHRIAEFEKQIPHETNPCRVDLIRLKKELGRAMFETTQKKHNSLVATNY
VKTCLNNQIKLFLAMNDLTL*
MIP04030.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33325-PB | 313 | CG33325-PB | 1..313 | 8..320 | 1595 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM26325-PA | 267 | GM26325-PA | 19..263 | 37..281 | 1156 | 88.2 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD20850-PA | 236 | GD20850-PA | 1..236 | 85..320 | 1177 | 91.1 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE18061-PA | 301 | GE18061-PA | 19..294 | 37..312 | 1101 | 73.9 | Plus |