Clone MIP04423 Report

Search the DGRC for MIP04423

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:44
Well:23
Vector:pOT2
Associated Gene/TranscriptCG11023-RB
Protein status:MIP04423.pep: gold
Sequenced Size:1917

Clone Sequence Records

MIP04423.complete Sequence

1917 bp assembled on 2009-04-28

GenBank Submission: BT082087.1

> MIP04423.complete
TTCGGCACGAGGCTACTCGCATGTAGAGATTTCCACTTATGTTTTCTCTA
CTTTCAGCAACCGAGAAGAGAACCCACGTTTGAACAAGTATCGGCGTGTG
GACAACAGCTATCCCCGCTTCATAACGAATGAGGCTGCCGAGGACCTGAT
TTACAAGAAGTCCATGGGCGAGCGGGATCAGCCACAGAGCTCAGAGCGGA
TCTCAATATTTAATCCGCCAGTATACACGCAGCACCAGGTGCGCAATGAA
GCCCCCTACATACCCACCACATTTGACCTCCTCTCAGACGATGAGGAGTC
GTCACAGAGAGTTGCCAACGCCGGGCCATCTTTCAGGCCCTTGACTTACT
CGGATGCTGTGCGTCTAAGCCAGAATGGCTTCGCCAACTCCCGCGTAAGT
GGGCACTCCAGCTATACGGTGCGCAGACCACCGGCACTAGTTGACAGAAG
CATTCTATCCCAGGAAATGGAGCGCATGGACCAAGAGCAGTATATCTACC
TTATCCGTACCGCAGCCCAAAGTAATTCCGTGGGCAGTCACTACGCCGAA
CCGGTTACTGATAACTCGGAGGTCAAGAAAGTCAGTGAAACCAACAAAAG
TGACGCACCACAGCCGTTAACCCCTCAACCTACCAGACTCACCAGAACAG
AATCCTTGCACCGTCGTTTTGCCAGCTGCGTCAACTTAAATGATGACTTC
GCCGAGCAATTTAAAGCAAGAGCGGCGGACTGTGAAGAGAAATCCAAACA
TCGTCTTAGATTAGCTGAAGAGCAGAGGCTTTTTTCGAATTTCAGTGCTA
TAAAGAACATAGATGAACTCCGTGCCTATGAACGAAAAGTAGTGGAAAAC
ATATTCCAGTCTTGTATCGCCCACAAGCCCATTTTTGTACTCGGGCCCTT
GGACAAGCCAAATGTGAAGAAAGTGACCAAGCTCATTCCGTTAACAGAGG
AGCACCACGATCGCTTTAACGAAATTACACAGGATGATAAATCGACGGTA
TGGCAACGAATATATTGATGTCTTTCGTACCCATTGAAAACGTTGTGGTG
CTTGCGCTTTAAAATCTTATATTAGGAAATTATTTTTAAATTTAACCTAC
ACATAACTACCGAAGACATATGCACGTTTATTAATGGGAAATGGCTTAAC
GACGAGGTCATTAACTTTTACATGTCCTTGCTGACAGAACGGTCGGAGAA
GAGATCTGGCGTACTTCCCGCCACTTACGCCATAAACACATTCTTCGTGC
CCCGCCTCCTGCAAGCTGGGCATGCAGGCATTAAGCGCTGGACTCGCAAA
GTGGACTTGTTCAGCAAGGACATAATCCCGGTACCAGTGCACTGCAACGG
CGTCCACTGGTGCATGGCCATCATACACTTGCGGAACAAGACAATCCGGT
ATTATGACTCAAAGGGAAAGCCAAACCGACCAGTGCTGGACGCTCTAGAG
AAATATCTACGCGAAGAGTCAATATTCAAGCCCAAAAAGCAGTTTGATAC
CAGCGATTTTGTTATTGAGAGCGTGCAGAATATACCACGACAGTTAGATG
GCAGCGATTGCGGTATCTTCAGCTGCATGTTCGCCGAGTATATAACGTGT
GATGTGCCAATTACCTTTACCCAGTCGGAAATGTTGTACTTCCGCAAGAA
GATGGCTCTAGAAATCGTCGACGGAGAGTTGTGACAGTAGAATCACACAG
CTACGCAAGAATGTGGAGAATCCAGTTTAGTTATTTTTACAAATCTTACG
TAAACACTCCAAGCATGAATTCGCAACAAGTGCTTAGCTATTTAATTGAA
TTGAGCTGGCCGAGAGATGTGCTGGTGCAATAACTTGTTCTCATATCTGA
TTGTAACAGAGAATCTAGTTTTTCAATAAAATTTCCCCAAGTAAAAAAAA
AAAAAAAAAAAAAAAAA

MIP04423.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11023-RB 1994 CG11023-RB 92..1977 12..1897 9430 100 Plus
CG11023.b 2199 CG11023.b 92..1977 12..1897 9430 100 Plus
CG11023-RC 1802 CG11023-RC 1..986 13..998 4930 100 Plus
CG11023-RC 1802 CG11023-RC 985..1802 1075..1892 4090 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8191..9481 599..1892 6390 99.8 Plus
chr2L 23010047 chr2L 7528..8116 12..600 2915 99.7 Plus
chrX 22417052 chrX 19091546..19092689 1892..774 2300 81.2 Minus
chrX 22417052 chrX 19093395..19093884 511..12 1150 82.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:03:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8191..9489 599..1897 6495 100 Plus
2L 23513712 2L 7528..8116 12..600 2945 100 Plus
X 23542271 X 19202642..19203789 1896..774 2335 81.4 Minus
X 23542271 X 19204495..19204984 511..12 1165 83.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8191..9489 599..1897 6495 100 Plus
2L 23513712 2L 7528..8116 12..600 2945 100 Plus
X 23527363 X 19210970..19211633 1690..1027 1925 85.9 Minus
X 23527363 X 19212815..19213082 277..12 775 86.5 Minus
X 23527363 X 19212677..19212817 427..287 450 87.9 Minus
X 23527363 X 19210740..19210838 1896..1798 300 86.8 Minus
X 23527363 X 19210865..19210927 1788..1726 270 95.2 Minus
X 23527363 X 19211682..19211791 979..870 250 81.8 Minus
X 23527363 X 19212593..19212660 511..444 175 83.8 Minus
Blast to na_te.dros performed on 2019-03-16 15:44:01 has no hits.

MIP04423.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:45:02 Download gff for MIP04423.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7528..8116 12..600 99 -> Plus
chr2L 8193..9481 601..1892 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:51:12 Download gff for MIP04423.complete
Subject Subject Range Query Range Percent Splice Strand
CG11023-RA 789..1407 1068..1684 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:46:29 Download gff for MIP04423.complete
Subject Subject Range Query Range Percent Splice Strand
CG11023-RB 1..855 164..1018 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:17:33 Download gff for MIP04423.complete
Subject Subject Range Query Range Percent Splice Strand
CG11023-RB 1..855 164..1018 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:47:24 Download gff for MIP04423.complete
Subject Subject Range Query Range Percent Splice Strand
CG11023-RB 1..855 164..1018 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-28 17:10:12 Download gff for MIP04423.complete
Subject Subject Range Query Range Percent Splice Strand
CG11023-RA 1..588 13..600 100 == Plus
CG11023-RA 949..1766 1075..1892 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:46:29 Download gff for MIP04423.complete
Subject Subject Range Query Range Percent Splice Strand
CG11023-RB 1..1880 13..1892 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:33 Download gff for MIP04423.complete
Subject Subject Range Query Range Percent Splice Strand
CG11023-RB 1..1880 13..1892 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:47:24 Download gff for MIP04423.complete
Subject Subject Range Query Range Percent Splice Strand
CG11023-RB 1..1880 13..1892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:45:02 Download gff for MIP04423.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7528..8116 12..600 100 -> Plus
2L 8193..9484 601..1892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:45:02 Download gff for MIP04423.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7528..8116 12..600 100 -> Plus
2L 8193..9484 601..1892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:45:02 Download gff for MIP04423.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7528..8116 12..600 100 -> Plus
2L 8193..9484 601..1892 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:33 Download gff for MIP04423.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7528..8116 12..600 100 -> Plus
arm_2L 8193..9484 601..1892 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:32:18 Download gff for MIP04423.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7528..8116 12..600 100 -> Plus
2L 8193..9484 601..1892 100   Plus

MIP04423.pep Sequence

Translation from 1 to 1017

> MIP04423.pep
SARGYSHVEISTYVFSTFSNREENPRLNKYRRVDNSYPRFITNEAAEDLI
YKKSMGERDQPQSSERISIFNPPVYTQHQVRNEAPYIPTTFDLLSDDEES
SQRVANAGPSFRPLTYSDAVRLSQNGFANSRVSGHSSYTVRRPPALVDRS
ILSQEMERMDQEQYIYLIRTAAQSNSVGSHYAEPVTDNSEVKKVSETNKS
DAPQPLTPQPTRLTRTESLHRRFASCVNLNDDFAEQFKARAADCEEKSKH
RLRLAEEQRLFSNFSAIKNIDELRAYERKVVENIFQSCIAHKPIFVLGPL
DKPNVKKVTKLIPLTEEHHDRFNEITQDDKSTVWQRIY*

MIP04423.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16000-PA 1044 GF16000-PA 412..597 21..177 216 32.3 Plus
Dana\GF16000-PA 1044 GF16000-PA 733..835 218..327 160 33.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18071-PA 1465 GG18071-PA 836..1030 2..210 624 62.3 Plus
Dere\GG18071-PA 1465 GG18071-PA 1122..1261 185..332 366 56.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12462-PA 851 GH12462-PA 219..436 15..206 150 25.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11023-PB 284 CG11023-PB 1..284 55..338 1468 100 Plus
CG11023-PC 480 CG11023-PC 1..278 55..332 1432 100 Plus
CG11023-PD 272 CG11023-PD 1..272 55..338 1379 95.8 Plus
Ulp1-PA 1513 CG12359-PA 897..1057 20..186 579 70.1 Plus
Ulp1-PA 1513 CG12359-PA 1169..1309 182..332 312 45 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22759-PA 1037 GM22759-PA 701..1012 2..326 847 57.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15595-PA 979 GD15595-PA 532..712 2..186 608 67 Plus
Dsim\GD15595-PA 979 GD15595-PA 814..964 185..326 259 46.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10155-PA 1064 GK10155-PA 740..853 206..325 181 33.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15468-PA 1524 GE15468-PA 912..1075 20..184 639 73.9 Plus
Dyak\GE15468-PA 1524 GE15468-PA 1180..1319 185..331 438 64.6 Plus

MIP04423.hyp Sequence

Translation from 13 to 1017

> MIP04423.hyp
YSHVEISTYVFSTFSNREENPRLNKYRRVDNSYPRFITNEAAEDLIYKKS
MGERDQPQSSERISIFNPPVYTQHQVRNEAPYIPTTFDLLSDDEESSQRV
ANAGPSFRPLTYSDAVRLSQNGFANSRVSGHSSYTVRRPPALVDRSILSQ
EMERMDQEQYIYLIRTAAQSNSVGSHYAEPVTDNSEVKKVSETNKSDAPQ
PLTPQPTRLTRTESLHRRFASCVNLNDDFAEQFKARAADCEEKSKHRLRL
AEEQRLFSNFSAIKNIDELRAYERKVVENIFQSCIAHKPIFVLGPLDKPN
VKKVTKLIPLTEEHHDRFNEITQDDKSTVWQRIY*

MIP04423.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11023-PB 284 CG11023-PB 1..284 51..334 1468 100 Plus
CG11023-PC 480 CG11023-PC 1..278 51..328 1432 100 Plus
CG11023-PD 272 CG11023-PD 1..272 51..334 1379 95.8 Plus
Ulp1-PA 1513 CG12359-PA 897..1057 16..182 579 70.1 Plus
Ulp1-PA 1513 CG12359-PA 1169..1309 178..328 312 45 Plus