Clone MIP04572 Report

Search the DGRC for MIP04572

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:45
Well:72
Vector:pOT2
Associated Gene/TranscriptCG13175-RA
Protein status:MIP04572.pep: gold
Sequenced Size:2263

Clone Sequence Records

MIP04572.complete Sequence

2263 bp assembled on 2009-04-30

GenBank Submission: BT082113.1

> MIP04572.complete
AATCACATTTCGGGTAAAAACAAATTGAAATATCCACCGAATTTAAATAT
TAAAGTTAGAGAAGCTGCCAAATATCTGGAGTTACAATCAGGGACAAGGA
CAAGGACTACTACACTAGAGGAGAGCTTTTACAAGCAATCCGGTGAAACC
ACATATAATGACAAGTCCGTCGCGGGATATAAACGATCTTTTTGACGATA
TTGTCCTGACCGAGGAGAAGGAGGCACGTTTGGGCTACGAGGAGGGACTG
AAGGACGGCCAGGAGCAGGGCAACGAAGAGGGCTATAAATTGGGCTACGC
CCAGGGAGTATCCCTAGGCGAGGAGCTCGGCAAGATTCTGGGCCAGGTGG
TGGCCCAGCAGCAGCTGAAACACACGGACAAGGTGCGTCGCAGCTTGGAA
CAGTTGCGTTCGCTCATCGAGGAGTTTCCCCGCACCAACGATCCGCAGGC
GGACATAGTGGGTGCTGTGCAGGACATTCGCTCCTCCCATCGTCGCCTTC
GCGCCCAGCTGGGATCCAAAAAAACGCCTGGTGCAGCGCCTGCAGAGACC
AATTCTGTCGAGCACAAGGACTACAGCTTCTAGCCTTATAGCACCATGTC
CAAGGTGGGAGTTGTGCAGTTGCAGAGGCGTCTGGATGGCTTACTGGCCT
TCCTCAATCCGCACTGGGATTTTGTCAATTGCCACATGGTGAACTACTTG
ACGGACCAGCACTGGGACGGCTTTTTATCCGAAACGCTGAAAAGTGAGAT
CGCCGGCAAGGAAGATGTGGCTCTGGCCATAGAAGACCTATTTTGGAAAA
CTGATGAATCAGAAAGGTTTCCGGCATGGCGAGAATTCCTAGGCAAGAGC
AAACAAGAACGCCTGTCGCTTCAGAGGGTCAGGGGAACTCCACGCAGCTA
AGCATTCGGGAGTTTATGAGCGCCAAAAAGTGCCATGAGGTGGATCTAAC
AGCCGTTCTCGTGGACCAGCTTGTGAAGAACTCCGGTCAAGATTGCTTCA
TTGTAGACGCGGGCGATGGCAAAGGGTATTTATCCTCGCGCTTGGCGCTC
CAGTATGGTCACCGCGTGCTCGGCATCGATGCGAACGCGGCAAACACCGA
GAACGCATTGAATAGGAATCGCAAATTGCAGCGCGCTTGGAATGGCCTTA
CGGAACGAGCGGAGCTGCAAGTCCAGGGAATCACGCCCAAGAGACGTGGT
AAAAAGTCGCCAGCCAGGGAGAGCACCAAGAGTGCGCCTGCCTTGGAAAA
CTACAAGACAACGGCAAAGTTTATAACCACCGAACTTAACTTTGGTGCCC
TGCTGGCGGAGAATTTCACTCAGTTTAGACCGGAAGACAGTCCAAACATT
TGCCTTACTGGATTGCATACCTGTGGCAACCTGGCCGCCACCTGTCTTCA
GGTTTTCCACGCCCAAACGGACTGCCGGTTGCTTTGTAATGTTGGCTGCT
GCTATCATTTGCTGCGGGAGCGCTATTCGCAGCAGGAGTTCTTTGGCAAT
AAGTCCCTGATGGAGCTGCAAACAGACTATGGATTCCCATTGAGTCAGTA
CCTGCGGGAGCGACAAGTGCGAATGGGTCGCAATGCGCGGATGCTGGCGG
CCCAGTCAATTGAACGCACCTTGGACACCAAGGAGCTGCCTAATGTAACG
CTCTACTATCGAGCTCTCTTGGAGATTCTGGTTTGCCGCCATGCGCCGGA
GCTGAAAAACGAACTGCAGGTGGGCAAGGTACGGAAATTCGAGAGTTTCG
AGGAGTACATTCAAAAGTGTGCCACCAAATTGGATGCTCCCTGGTTGGCA
GCTGTTGAGAAAGAAGAACTTCAATCCCTGCTCCAGGAATATGCCGTGCA
TAAATACTTCTTGGATCTGTTCTATCTGCTGCGCATGTCCTTTGCTCCGG
TGCTGGAGAGTCTAATTCTCCTGGATCGCCTGCTCTACCTCAAGGAACTT
GGCTATGAACGCAGCTATCTGATAGATTTATTTGATCCCGTCATTTCGCC
CAGGCATTTTGCAATTGTTTCTATAAAGCAGCAAACGCAACAATAATGAA
ATTCACAAATGCATCAAAAGCTTGACGAGAAAGCCGGTTGTGTTTAATTA
TTTATAGATTATAGCGTGCAATACTTTTCATATCGTATATGTATTGCGTT
AACGCTTTTAAAAATCTAACTAAACCATAGCACACAAAAAGTAAATAAGG
TTGTTAAAACTAAGAATCATTATAATAAATGTAATCATGACTTGTAAAAA
AAAAAAAAAAAAA

MIP04572.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13175-RA 2249 CG13175-RA 5..2249 1..2245 11225 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8071600..8072721 1124..2245 5595 99.9 Plus
chr2R 21145070 chr2R 8069854..8070794 1..941 4705 100 Plus
chr2R 21145070 chr2R 8070852..8071045 938..1131 970 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:03:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12184385..12185508 1124..2247 5605 99.9 Plus
2R 25286936 2R 12182639..12183579 1..941 4705 100 Plus
2R 25286936 2R 12183637..12183830 938..1131 970 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12185584..12186707 1124..2247 5605 99.9 Plus
2R 25260384 2R 12183838..12184778 1..941 4705 100 Plus
2R 25260384 2R 12184836..12185029 938..1131 970 100 Plus
Blast to na_te.dros performed 2019-03-17 00:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 4290..4394 1..109 148 62.4 Plus

MIP04572.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:13:38 Download gff for MIP04572.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8069854..8070792 1..939 100 -> Plus
chr2R 8070854..8071045 940..1131 100 -> Plus
chr2R 8071608..8072721 1132..2245 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:51:29 Download gff for MIP04572.complete
Subject Subject Range Query Range Percent Splice Strand
CG33964-RA 1..1451 596..2046 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:50:06 Download gff for MIP04572.complete
Subject Subject Range Query Range Percent Splice Strand
CG33964-RA 1..1451 596..2046 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:32:12 Download gff for MIP04572.complete
Subject Subject Range Query Range Percent Splice Strand
CG33964-RA 1..1451 596..2046 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:14:33 Download gff for MIP04572.complete
Subject Subject Range Query Range Percent Splice Strand
CG33964-RA 1..1451 596..2046 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-30 12:46:19 Download gff for MIP04572.complete
Subject Subject Range Query Range Percent Splice Strand
CG33964-RA 1..2245 1..2245 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:50:06 Download gff for MIP04572.complete
Subject Subject Range Query Range Percent Splice Strand
CG33964-RA 1..2245 1..2245 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:12 Download gff for MIP04572.complete
Subject Subject Range Query Range Percent Splice Strand
CG13175-RA 1..2245 1..2245 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:33 Download gff for MIP04572.complete
Subject Subject Range Query Range Percent Splice Strand
CG13175-RA 1..2245 1..2245 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:13:38 Download gff for MIP04572.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12182639..12183577 1..939 100 -> Plus
2R 12183639..12183830 940..1131 100 -> Plus
2R 12184393..12185506 1132..2245 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:13:38 Download gff for MIP04572.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12182639..12183577 1..939 100 -> Plus
2R 12183639..12183830 940..1131 100 -> Plus
2R 12184393..12185506 1132..2245 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:13:38 Download gff for MIP04572.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12182639..12183577 1..939 100 -> Plus
2R 12183639..12183830 940..1131 100 -> Plus
2R 12184393..12185506 1132..2245 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:12 Download gff for MIP04572.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8071898..8073011 1132..2245 100   Plus
arm_2R 8070144..8071082 1..939 100 -> Plus
arm_2R 8071144..8071335 940..1131 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:41:01 Download gff for MIP04572.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12183838..12184776 1..939 100 -> Plus
2R 12184838..12185029 940..1131 100 -> Plus
2R 12185592..12186705 1132..2245 100   Plus

MIP04572.pep Sequence

Translation from 157 to 582

> MIP04572.pep
MTSPSRDINDLFDDIVLTEEKEARLGYEEGLKDGQEQGNEEGYKLGYAQG
VSLGEELGKILGQVVAQQQLKHTDKVRRSLEQLRSLIEEFPRTNDPQADI
VGAVQDIRSSHRRLRAQLGSKKTPGAAPAETNSVEHKDYSF*

MIP04572.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12826-PA 141 GF12826-PA 1..141 1..141 564 76.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20254-PA 141 GG20254-PA 1..141 1..141 671 91.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22792-PA 141 GH22792-PA 4..141 3..141 422 65.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13175-PA 141 CG13175-PA 1..141 1..141 715 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20588-PA 140 GI20588-PA 1..140 1..141 486 68.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10806-PA 138 GL10806-PA 1..138 1..141 533 72.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24497-PA 138 GA24497-PA 1..138 1..141 533 72.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21341-PA 141 GM21341-PA 1..141 1..141 718 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15404-PA 141 GD15404-PA 1..141 1..141 726 99.3 Plus
Dsim\GD15401-PA 635 GD15401-PA 498..635 4..141 716 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20769-PA 138 GJ20769-PA 1..138 1..141 503 68.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22173-PA 140 GK22173-PA 1..140 1..141 500 70.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12414-PA 141 GE12414-PA 1..141 1..141 709 96.5 Plus

MIP04572.hyp Sequence

Translation from 825 to 2045

> MIP04572.hyp
MARIPRQEQTRTPVASEGQGNSTQLSIREFMSAKKCHEVDLTAVLVDQLV
KNSGQDCFIVDAGDGKGYLSSRLALQYGHRVLGIDANAANTENALNRNRK
LQRAWNGLTERAELQVQGITPKRRGKKSPARESTKSAPALENYKTTAKFI
TTELNFGALLAENFTQFRPEDSPNICLTGLHTCGNLAATCLQVFHAQTDC
RLLCNVGCCYHLLRERYSQQEFFGNKSLMELQTDYGFPLSQYLRERQVRM
GRNARMLAAQSIERTLDTKELPNVTLYYRALLEILVCRHAPELKNELQVG
KVRKFESFEEYIQKCATKLDAPWLAAVEKEELQSLLQEYAVHKYFLDLFY
LLRMSFAPVLESLILLDRLLYLKELGYERSYLIDLFDPVISPRHFAIVSI
KQQTQQ*

MIP04572.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG33964-PA 494 CG33964-PA 105..494 17..406 2009 99.7 Plus
CG2906-PE 364 CG2906-PE 26..363 34..401 211 25.9 Plus
CG2906-PD 456 CG2906-PD 118..455 34..401 211 25.9 Plus