Clone MIP04676 Report

Search the DGRC for MIP04676

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:46
Well:76
Vector:pOT2
Associated Gene/TranscriptCG18672-RB
Protein status:MIP04676.pep: gold
Sequenced Size:1064

Clone Sequence Records

MIP04676.complete Sequence

1064 bp assembled on 2009-05-14

GenBank Submission: BT058082.1

> MIP04676.complete
TCGGAGCTGCAGCCAAGTTAGCATATCTCCCGCGCATTGACATCGGAAGA
ACTAAGTAAAATCCACACCGACGAGCGACATAAGACACACGAGTTATCAA
TTAATTGCAATAATAATAATAGCATTGCAATCGTAGCAATCACAACTGAA
ATTCACAACAATGCAGGCGATTGCGTTTCACAAACTGTTACTACTGCTTC
CGCTGGCGTTTTATCAATCAACAAATGGTATGGAGTGGAATTACCTGAAG
AATGGCAAGGATTGGGAGGACCTCTGCTCCTCCGGAAAACACCAATCGCC
GATTTTGTTGGATTCTAGAACGGCGCGCAAGTGGGTCTTACCTGGGATCA
CTTTCTGGCATTATTATAGGCTGCTTAAGCGTCCGTTTTACATCAGAAAC
AATGGGCACTCCATTAGCTTGGACATTCCCGTGACGAGCAATGGAAGGAA
GCCCTTCATAACCGGCGGCCGTTTGAAGGGTCGTTACTATGCCGATGGAC
TTCACTTCCATTGGGGGTCCTACAAATCCCGCGGATCCGAGCACTTGATT
AACAAGCGCCGATTCGACGCAGAAATCCATATTGTCCATCGGAACGAGAA
GTACAGAAATATTGCACAAGCCGTCCGTCAGAAAGATGGTTTGGCTGTTG
TCGCAATCATGGTGGCTATTAAGGACAATGCGAAATCCACACCTTTGTCC
AGGCTCATGGAGGCAGTCGTACGGGTGCCGATCGAAGACTCGAACGCCAC
TGTTTTTGGCCAATCAAGCTTGGATCAGTTGATCGGAGGTGTGAGTCACA
GGGACTTCTTCACCTACGAGGGCTCACTGACCACGCCCCTCTGCGACGAG
ACTGTCACCTGGATTGTTTTCACCGAGACTACGACTGTCACCATGTCATC
CGTCTCAAAGTTTTGGCTGTTGCGAGACCACTGGGGCCACAGGCTGATCA
ACAATTATCGGATTGTCCAAGATCTAAACAATCGCACTGTGTTCTATAAG
AAGAGAATGTCATAAAAGTCATAAGTTATAAGAACTAAAAAAAAAAAAAA
AAAAAAAAAAAAAA

MIP04676.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG18672.c 1297 CG18672.c 122..1160 1..1039 5195 100 Plus
CG18672.b 1303 CG18672.b 122..791 1..670 3350 100 Plus
CG18672.a 1288 CG18672.a 122..782 1..661 3305 100 Plus
CG18672.b 1303 CG18672.b 798..1166 671..1039 1845 100 Plus
CG18672.a 1288 CG18672.a 783..1151 671..1039 1845 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27083663..27084028 671..1036 1815 99.7 Plus
chr3R 27901430 chr3R 27083343..27083599 414..670 1285 100 Plus
chr3R 27901430 chr3R 27082609..27082838 1..230 1150 100 Plus
chr3R 27901430 chr3R 27083031..27083127 227..323 485 100 Plus
chr3R 27901430 chr3R 27083190..27083285 322..417 465 99 Plus
chr3R 27901430 chr3R 27081562..27081662 503..603 205 80.2 Plus
chr3R 27901430 chr3R 5944646..5944721 804..879 185 82.9 Plus
chr3R 27901430 chr3R 27082146..27082218 791..863 185 83.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:03:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31261302..31261670 671..1039 1845 100 Plus
3R 32079331 3R 31260982..31261238 414..670 1285 100 Plus
3R 32079331 3R 31260247..31260476 1..230 1150 100 Plus
3R 32079331 3R 31260669..31260765 227..323 485 100 Plus
3R 32079331 3R 31260829..31260924 322..417 465 99 Plus
3R 32079331 3R 31259200..31259300 503..603 205 80.2 Plus
3R 32079331 3R 10118874..10118949 804..879 185 82.9 Plus
3R 32079331 3R 31259784..31259856 791..863 185 83.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31002133..31002501 671..1039 1845 100 Plus
3R 31820162 3R 31001813..31002069 414..670 1285 100 Plus
3R 31820162 3R 31001078..31001307 1..230 1150 100 Plus
3R 31820162 3R 31001500..31001596 227..323 485 100 Plus
3R 31820162 3R 31001660..31001755 322..417 465 98.9 Plus
3R 31820162 3R 31000031..31000131 503..603 205 80.1 Plus
3R 31820162 3R 31000615..31000687 791..863 185 83.5 Plus
Blast to na_te.dros performed on 2019-03-16 18:12:38 has no hits.

MIP04676.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:13:33 Download gff for MIP04676.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27083191..27083281 323..413 100 -> Plus
chr3R 27082609..27082835 1..227 100 -> Plus
chr3R 27083032..27083126 228..322 100 -> Plus
chr3R 27083343..27083599 414..670 100 -> Plus
chr3R 27083663..27084028 671..1036 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:05:10 Download gff for MIP04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG18672-RA 1..92 230..321 100 == Plus
CG18672-RA 93..708 405..1015 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:52:26 Download gff for MIP04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG18672-RA 1..92 230..321 100 == Plus
CG18672-RA 93..708 405..1015 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:46:40 Download gff for MIP04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG18672-RB 1..855 161..1015 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:33:34 Download gff for MIP04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG18672-RB 1..855 161..1015 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-05 15:49:21 Download gff for MIP04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG18672-RA 1..92 230..321 100 == Plus
CG18672-RA 93..708 405..1015 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:52:26 Download gff for MIP04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG18672-RA 1..92 230..321 100 == Plus
CG18672-RA 93..708 405..1015 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:40 Download gff for MIP04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG18672-RB 1..1036 1..1036 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:33:34 Download gff for MIP04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG18672-RB 1..1036 1..1036 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:13:33 Download gff for MIP04676.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31260247..31260473 1..227 100 -> Plus
3R 31260670..31260764 228..322 100 -> Plus
3R 31260830..31260920 323..413 100 -> Plus
3R 31260982..31261238 414..670 100 -> Plus
3R 31261302..31261667 671..1036 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:13:33 Download gff for MIP04676.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31260247..31260473 1..227 100 -> Plus
3R 31260670..31260764 228..322 100 -> Plus
3R 31260830..31260920 323..413 100 -> Plus
3R 31260982..31261238 414..670 100 -> Plus
3R 31261302..31261667 671..1036 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:13:33 Download gff for MIP04676.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31260247..31260473 1..227 100 -> Plus
3R 31260670..31260764 228..322 100 -> Plus
3R 31260830..31260920 323..413 100 -> Plus
3R 31260982..31261238 414..670 100 -> Plus
3R 31261302..31261667 671..1036 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:40 Download gff for MIP04676.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27085969..27086195 1..227 100 -> Plus
arm_3R 27086392..27086486 228..322 100 -> Plus
arm_3R 27086552..27086642 323..413 100 -> Plus
arm_3R 27086704..27086960 414..670 100 -> Plus
arm_3R 27087024..27087389 671..1036 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:43:15 Download gff for MIP04676.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31001078..31001304 1..227 100 -> Plus
3R 31001501..31001595 228..322 100 -> Plus
3R 31001661..31001751 323..413 100 -> Plus
3R 31001813..31002069 414..670 100 -> Plus
3R 31002133..31002498 671..1036 100   Plus

MIP04676.pep Sequence

Translation from 160 to 1014

> MIP04676.pep
MQAIAFHKLLLLLPLAFYQSTNGMEWNYLKNGKDWEDLCSSGKHQSPILL
DSRTARKWVLPGITFWHYYRLLKRPFYIRNNGHSISLDIPVTSNGRKPFI
TGGRLKGRYYADGLHFHWGSYKSRGSEHLINKRRFDAEIHIVHRNEKYRN
IAQAVRQKDGLAVVAIMVAIKDNAKSTPLSRLMEAVVRVPIEDSNATVFG
QSSLDQLIGGVSHRDFFTYEGSLTTPLCDETVTWIVFTETTTVTMSSVSK
FWLLRDHWGHRLINNYRIVQDLNNRTVFYKKRMS*

MIP04676.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17777-PA 247 GF17777-PA 10..232 60..280 598 49.3 Plus
Dana\GF17778-PA 303 GF17778-PA 42..299 25..280 545 39.9 Plus
Dana\GF16571-PA 314 GF16571-PA 46..289 42..281 479 38.9 Plus
Dana\GF22952-PA 311 GF22952-PA 4..286 3..280 438 35.5 Plus
Dana\GF18008-PA 287 GF18008-PA 8..280 13..284 433 35.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11800-PA 630 GG11800-PA 128..352 48..270 648 56.4 Plus
Dere\GG11800-PA 630 GG11800-PA 370..627 25..280 557 42.2 Plus
Dere\GG12522-PA 303 GG12522-PA 10..289 6..283 482 35.2 Plus
Dere\GG12140-PA 311 GG12140-PA 42..286 40..280 441 37.4 Plus
Dere\GG12312-PA 279 GG12312-PA 21..274 26..278 379 33.2 Plus
Dere\GG17412-PA 304 GG17412-PA 21..269 25..277 363 38 Plus
Dere\GG11800-PA 630 GG11800-PA 22..132 60..170 357 57.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18014-PA 331 GH18014-PA 55..328 7..280 581 40.2 Plus
Dgri\GH18013-PA 286 GH18013-PA 10..283 4..280 580 40.5 Plus
Dgri\GH18011-PA 245 GH18011-PA 3..240 45..280 560 47.3 Plus
Dgri\GH22268-PA 258 GH22268-PA 22..255 49..280 510 41.9 Plus
Dgri\GH18016-PA 238 GH18016-PA 13..235 60..280 489 41.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG18672-PB 284 CG18672-PB 1..284 1..284 1514 100 Plus
CG18672-PC 286 CG18672-PC 1..286 1..284 1501 99.3 Plus
CG18672-PD 281 CG18672-PD 1..281 1..284 1488 98.9 Plus
CG3669-PB 298 CG3669-PB 1..286 1..280 761 52.4 Plus
CG18673-PC 302 CG18673-PC 42..299 25..280 557 41.9 Plus
CG5379-PB 303 CG5379-PB 10..289 6..283 505 38 Plus
CG5379-PA 303 CG5379-PA 10..289 6..283 505 38 Plus
caix-PA 311 CG6074-PA 43..284 41..278 436 38.3 Plus
CG10899-PA 279 CG10899-PA 21..277 26..281 416 36.4 Plus
CG3940-PC 304 CG3940-PC 21..269 25..277 369 38 Plus
CG3940-PB 304 CG3940-PB 21..269 25..277 369 38 Plus
CG3940-PA 304 CG3940-PA 21..269 25..277 369 38 Plus
CG10899-PC 200 CG10899-PC 3..198 89..281 321 36.4 Plus
CAH2-PA 335 CG6906-PA 47..283 41..278 320 34.2 Plus
CAH2-PB 253 CG6906-PB 3..201 80..278 274 34.8 Plus
CG11284-PE 250 CG11284-PE 37..230 78..270 225 28.4 Plus
CG11284-PD 250 CG11284-PD 37..230 78..270 225 28.4 Plus
CG11284-PC 250 CG11284-PC 37..230 78..270 225 28.4 Plus
CG11284-PB 250 CG11284-PB 37..230 78..270 225 28.4 Plus
CG11284-PA 250 CG11284-PA 37..230 78..270 225 28.4 Plus
CAH1-PA 270 CG7820-PA 23..262 40..275 223 28.1 Plus
CG32698-PD 327 CG32698-PD 47..293 34..277 219 30.2 Plus
CG32698-PB 327 CG32698-PB 47..293 34..277 219 30.2 Plus
CG32698-PC 327 CG32698-PC 47..293 34..277 219 30.2 Plus
CG32698-PA 327 CG32698-PA 47..293 34..277 219 30.2 Plus
CG1402-PC 333 CG1402-PC 58..295 37..277 199 28.9 Plus
CG1402-PB 333 CG1402-PB 58..295 37..277 199 28.9 Plus
CG15227-PB 295 CG15227-PB 71..293 43..279 176 27.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23612-PA 410 GI23612-PA 49..307 26..280 524 40.9 Plus
Dmoj\GI23614-PA 278 GI23614-PA 14..271 26..283 510 39.6 Plus
Dmoj\GI23611-PA 207 GI23611-PA 1..196 87..280 508 48.5 Plus
Dmoj\GI10376-PA 298 GI10376-PA 10..289 6..281 481 36.2 Plus
Dmoj\GI23275-PA 310 GI23275-PA 3..285 10..280 432 34.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13738-PA 234 GL13738-PA 1..223 60..280 565 47.5 Plus
Dper\GL26017-PA 288 GL26017-PA 7..286 6..271 526 36.1 Plus
Dper\GL13739-PA 353 GL13739-PA 46..291 25..266 502 39 Plus
Dper\GL23614-PA 305 GL23614-PA 43..280 41..280 386 35 Plus
Dper\GL27210-PA 279 GL27210-PA 21..244 25..277 341 36.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27011-PB 304 GA27011-PB 37..293 26..280 638 46.7 Plus
Dpse\GA25239-PA 298 GA25239-PA 7..293 6..278 564 38.7 Plus
Dpse\GA27012-PA 314 GA27012-PA 46..306 25..281 546 39.5 Plus
Dpse\GA10625-PA 291 GA10625-PA 2..273 6..278 482 37.8 Plus
Dpse\GA18835-PA 297 GA18835-PA 10..289 6..281 468 37 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12932-PA 266 GM12932-PA 1..263 24..284 1227 86.3 Plus
Dsec\GM12931-PA 299 GM12931-PA 1..287 1..280 732 52.6 Plus
Dsec\GM12933-PA 302 GM12933-PA 42..299 25..280 555 41.5 Plus
Dsec\GM10133-PA 311 GM10133-PA 1..286 1..280 436 34.9 Plus
Dsec\GM23454-PA 279 GM23454-PA 21..277 26..281 435 36.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21569-PA 238 GD21569-PA 1..235 24..284 1073 78.3 Plus
Dsim\GD21568-PA 299 GD21568-PA 1..287 1..280 737 52.6 Plus
Dsim\GD21570-PA 260 GD21570-PA 1..257 26..280 550 41.2 Plus
Dsim\GD18465-PA 303 GD18465-PA 10..289 6..283 478 36.7 Plus
Dsim\GD18095-PA 311 GD18095-PA 1..286 1..280 442 35.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23584-PA 246 GJ23584-PA 13..235 60..280 532 45.7 Plus
Dvir\GJ23586-PA 272 GJ23586-PA 14..268 26..280 525 39.7 Plus
Dvir\GJ23585-PA 304 GJ23585-PA 37..302 19..281 513 38.6 Plus
Dvir\GJ22838-PA 297 GJ22838-PA 10..292 6..284 510 37.7 Plus
Dvir\GJ24133-PA 310 GJ24133-PA 41..285 40..280 426 35.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10872-PA 306 GK10872-PA 42..301 25..280 563 40.8 Plus
Dwil\GK10871-PA 205 GK10871-PA 1..196 87..280 511 50.7 Plus
Dwil\GK12982-PA 297 GK12982-PA 10..288 6..280 456 36.6 Plus
Dwil\GK12035-PA 312 GK12035-PA 43..287 40..280 445 37.4 Plus
Dwil\GK10881-PA 299 GK10881-PA 4..263 14..277 339 33.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10928-PA 298 GE10928-PA 1..286 1..280 731 52.1 Plus
Dyak\GE10930-PA 302 GE10930-PA 42..299 25..280 557 41.5 Plus
Dyak\GE10929-PA 195 GE10929-PA 1..192 91..280 515 50 Plus
Dyak\GE10587-PA 311 GE10587-PA 42..286 40..280 442 37.4 Plus
Dyak\GE10767-PA 282 GE10767-PA 21..277 26..281 388 34.2 Plus

MIP04676.hyp Sequence

Translation from 160 to 1014

> MIP04676.hyp
MQAIAFHKLLLLLPLAFYQSTNGMEWNYLKNGKDWEDLCSSGKHQSPILL
DSRTARKWVLPGITFWHYYRLLKRPFYIRNNGHSISLDIPVTSNGRKPFI
TGGRLKGRYYADGLHFHWGSYKSRGSEHLINKRRFDAEIHIVHRNEKYRN
IAQAVRQKDGLAVVAIMVAIKDNAKSTPLSRLMEAVVRVPIEDSNATVFG
QSSLDQLIGGVSHRDFFTYEGSLTTPLCDETVTWIVFTETTTVTMSSVSK
FWLLRDHWGHRLINNYRIVQDLNNRTVFYKKRMS*

MIP04676.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG18672-PB 284 CG18672-PB 1..284 1..284 1514 100 Plus
CG18672-PC 286 CG18672-PC 1..286 1..284 1501 99.3 Plus
CG18672-PD 281 CG18672-PD 1..281 1..284 1488 98.9 Plus
CG3669-PB 298 CG3669-PB 1..286 1..280 761 52.4 Plus
CG18673-PC 302 CG18673-PC 42..299 25..280 557 41.9 Plus