Clone MIP04754 Report

Search the DGRC for MIP04754

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:47
Well:54
Vector:pOT2
Associated Gene/TranscriptCG17327-RA
Protein status:MIP04754.pep: gold
Sequenced Size:871

Clone Sequence Records

MIP04754.complete Sequence

871 bp assembled on 2009-04-03

GenBank Submission: BT081394.1

> MIP04754.complete
CAAAGATCTAAAAATTTCCTATTCTGTCTATGGAATAAACACATTTATAA
TGCAAGAAAATATATTTTACAGTAAATTCTTTCAATTCGATAGTGGGCCA
AATGTCGTACAGAATATATCCGTGTCCCTTCGATGTGTTGACAACCCTGA
CCGAATTTCGTAATTTCGAAACGAACGAATTCAGCCGGCGAAGTGGAGAA
GAAAATGTCCGCATCGACGGACCAGGATCCCGTGGAACTAATGCTGAAGA
AGACCGGCTGCATAGAGCTTCACTACAAGGTGCAGGAGTGTATCGCCGAG
ACGGGCGACTGGAGGGCTTGCCAGGAGAAGGTGAAAGAGTTCCGGGCGTG
CATGCAGAAGTACGTGGAGCAGCAGAGCCAGAAGTATGCCCACGTCAAGT
AGCATCCTGCAGAAGTTCCTCAGCAACGGTTTGGCCTTCGGCAAGTCCAC
CAAACTGGCGCTGGTGGTCCGAACCGACCTAAAGATGTCCAAGGGAAAGA
CAGCGGCCCAGTGCGCCCATGCGGCGGTCATGTGCTACCAGAGCTCTGTG
CAGGGAACCAAGCTGCAGAACGCCATTCTGCAGCGTTGGTGTCGCCTGGG
ACAGCCGAAGATAGTGCTGCGCGTGGACAACTTCGAGCAGCTAAACTCCC
TGGAGCGACAGGCCCAAGAGTCGAACGTGGTGGCCGCCTTGGTGAGGGAT
GCCGGGCGCACTCAGCTGGAATCTGGGACAGCAACGGTCCTCGGACTGGG
TCCAGCCCCTGCCGAAGATCTAGACAAATTGGTGGCGCATTTGAAGCTTT
TGTGAACTCTTAGGTTTATGCAACGTTACAAATAAAGTACAAGTAATCAA
CAAAAAAAAAAAAAAAAAAAA

MIP04754.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17327-RA 859 CG17327-RA 1..853 1..853 4265 100 Plus
CG17327-RB 700 CG17327-RB 244..694 403..853 2255 100 Plus
CG17327.a 741 CG17327.a 285..735 403..853 2255 100 Plus
CG17327-RB 700 CG17327-RB 1..243 45..287 1215 100 Plus
CG17327.a 741 CG17327.a 68..284 71..287 1085 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8822133..8822983 851..1 4240 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:03:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12996874..12997726 853..1 4265 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12737705..12738557 853..1 4265 100 Minus
Blast to na_te.dros performed 2019-03-16 02:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 906..966 25..85 116 65.6 Plus

MIP04754.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:34:17 Download gff for MIP04754.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8822133..8822983 1..851 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:08:31 Download gff for MIP04754.complete
Subject Subject Range Query Range Percent Splice Strand
CG17327-RA 1..420 386..805 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:43:03 Download gff for MIP04754.complete
Subject Subject Range Query Range Percent Splice Strand
CG17327-RA 1..420 386..805 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:45:32 Download gff for MIP04754.complete
Subject Subject Range Query Range Percent Splice Strand
CG17327-RA 1..420 386..805 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:14:58 Download gff for MIP04754.complete
Subject Subject Range Query Range Percent Splice Strand
CG17327-RA 1..420 386..805 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-03 15:35:30 Download gff for MIP04754.complete
Subject Subject Range Query Range Percent Splice Strand
CG17327-RA 1..807 45..851 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:43:03 Download gff for MIP04754.complete
Subject Subject Range Query Range Percent Splice Strand
CG17327-RA 1..807 45..851 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:45:32 Download gff for MIP04754.complete
Subject Subject Range Query Range Percent Splice Strand
CG17327-RC 1..851 1..851 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:14:58 Download gff for MIP04754.complete
Subject Subject Range Query Range Percent Splice Strand
CG17327-RC 1..851 1..851 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:34:17 Download gff for MIP04754.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12996876..12997726 1..851 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:34:17 Download gff for MIP04754.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12996876..12997726 1..851 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:34:17 Download gff for MIP04754.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12996876..12997726 1..851 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:45:32 Download gff for MIP04754.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8822598..8823448 1..851 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:17:59 Download gff for MIP04754.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12737707..12738557 1..851 100   Minus

MIP04754.pep Sequence

Translation from 385 to 804

> MIP04754.pep
MPTSSSILQKFLSNGLAFGKSTKLALVVRTDLKMSKGKTAAQCAHAAVMC
YQSSVQGTKLQNAILQRWCRLGQPKIVLRVDNFEQLNSLERQAQESNVVA
ALVRDAGRTQLESGTATVLGLGPAPAEDLDKLVAHLKLL*

MIP04754.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13823-PA 139 GF13823-PA 1..139 1..139 624 86.3 Plus
Dana\GF17805-PA 182 GF17805-PA 63..182 17..139 275 44.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17084-PA 139 GG17084-PA 1..139 1..139 707 96.4 Plus
Dere\GG10346-PA 186 GG10346-PA 67..186 17..139 270 45.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20957-PA 128 GH20957-PA 1..128 12..139 515 74.2 Plus
Dgri\GH19492-PA 182 GH19492-PA 62..182 16..139 290 47.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17327-PC 139 CG17327-PC 1..139 1..139 689 100 Plus
CG17327-PA 139 CG17327-PA 1..139 1..139 689 100 Plus
CG1307-PE 186 CG1307-PE 73..186 23..139 269 47 Plus
CG1307-PC 186 CG1307-PC 73..186 23..139 269 47 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21294-PA 189 GI21294-PA 61..189 5..139 503 71.9 Plus
Dmoj\GI23763-PA 179 GI23763-PA 60..179 17..139 280 46.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11078-PA 132 GL11078-PA 1..132 1..139 588 81.3 Plus
Dper\GL22055-PA 181 GL22055-PA 63..181 18..139 269 45.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24602-PA 132 GA24602-PA 1..132 1..139 588 81.3 Plus
Dpse\GA12019-PA 181 GA12019-PA 62..181 17..139 268 45.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25967-PA 185 GM25967-PA 52..185 6..139 688 97.8 Plus
Dsec\GM10538-PA 186 GM10538-PA 73..186 23..139 271 47.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20527-PA 193 GD20527-PA 58..193 4..139 693 97.1 Plus
Dsim\GD19535-PA 186 GD19535-PA 73..186 23..139 271 47.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20896-PA 183 GJ20896-PA 65..183 21..139 511 80.7 Plus
Dvir\GJ23946-PA 167 GJ23946-PA 73..167 43..139 184 39.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22001-PA 176 GK22001-PA 58..176 21..139 480 73.1 Plus
Dwil\GK10837-PA 187 GK10837-PA 65..187 14..139 264 43.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24473-PA 193 GE24473-PA 58..193 4..139 679 94.9 Plus
Dyak\GE25841-PA 186 GE25841-PA 68..186 18..139 278 46.7 Plus

MIP04754.hyp Sequence

Translation from 385 to 804

> MIP04754.hyp
MPTSSSILQKFLSNGLAFGKSTKLALVVRTDLKMSKGKTAAQCAHAAVMC
YQSSVQGTKLQNAILQRWCRLGQPKIVLRVDNFEQLNSLERQAQESNVVA
ALVRDAGRTQLESGTATVLGLGPAPAEDLDKLVAHLKLL*

MIP04754.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17327-PC 139 CG17327-PC 1..139 1..139 689 100 Plus
CG17327-PA 139 CG17327-PA 1..139 1..139 689 100 Plus
CG1307-PE 186 CG1307-PE 73..186 23..139 269 47 Plus
CG1307-PD 186 CG1307-PD 73..186 23..139 269 47 Plus
CG1307-PC 186 CG1307-PC 73..186 23..139 269 47 Plus