Clone MIP04782 Report

Search the DGRC for MIP04782

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:47
Well:82
Vector:pOT2
Associated Gene/TranscriptCG2898-RA
Protein status:MIP04782.pep: gold
Sequenced Size:1278

Clone Sequence Records

MIP04782.complete Sequence

1278 bp assembled on 2009-04-07

GenBank Submission: BT081996.1

> MIP04782.complete
TGAAAAAAAAAAATATGTTCGAATTGTCCAAGTTAAGTCATGGCTATGTT
TTCAATCTGGATATCAAACTTTCGATAAACCCATCAACAAATCCAAATTT
GTAGTTTCTCGGCGAGATTGTGGGAGATGTGCTGTGCACCGATGTGTGGG
CCCTCGGTCTGCGGGCCTTCGATGTGCAACCCGCCCGCTTGTCGTGTGCC
ACTGGAGCCACTGCATCCGTCAACAGTCTACCACTGCTGTCCGTCCACGA
AGTGCACGCTGTGCTGTAATAACGAATCAAAACACGAGTGCCACTGCACC
TGCCAGCGCAACAAGCACATCGTGGAGGCGTTCAGCTGCCTGTTCCGGGT
TAGCAAGTTCCAGATCCTGACCACCCTCTTTCTACTGGCCTATCATGAGA
GCAGACCGCTGCCGCGCTTTCCGCGCGATCGCAACTGGTCGGTGATGGAG
AACGTGAAGGCACCGTACTCGGAGTTGCACGACCTGAGGATCTACGACAG
CCTGTTCGATCGCTGTGGCAACCGCATCGATCCGCTCGACCAAAAGAACA
CGTACAAGCTGTTGCGCCTGATCTTTCTCGGTCCAGTGCTGGTGCCCGAT
CAGCAGGCACAGCTACTGGCCATGCTGTACACGCTAAATGCCCATGCCGT
CTGTCCCGTGGATCTCAATGGCCTGCTATCGGTACTGCAGTATGTGAAGC
TGGATGAGCTGGTGTGCGGCATCTTGGAGCAGGACGGACGAGCGAAACGT
TTCCACAGCGGGCGGCAGTGCTTGGAGCTGTGCAATCTCTACCAGAAAGT
GGTCGCCACGGACAAGGATGCGGTTATTAAAAAGCATCGCCGTCGCAAGG
AGAAGTCCAAGAGCAAGGATTCGGAGGCACAGAAGAAGCCGCGTAGAACC
ATCACCGCGCAGATATACTGCACGCGTCGCGTTCCGGAGCCCGAGGATGT
TAGCTCACGGATCGAGACTATCACTCCAATCGTACGCAGTACAGCCACCT
CGTTGCGTCGCTCCTCCAACAAGAAAAGCTGGATGCCGGTCAATCGGAGC
AGCATTAATAACTCGGAGAAGGGATCTCGCCGGGGTTCGCGCAATCTCGC
GGGTTCACCGAAGAGAAACAAGCCGGAAGTGTCCAATGTGGGAGTGCGAA
TGCAGGGCGGCGACCGCCAAAGAACGAAGTGAAGCCACAGTGATTTATAA
GTCTCCCCCATCTGTTTTTAATCTCGGTCCATCTACATTTACTAAATTCC
GTAATGCAAAAAAAAAAAAAAAAAAAAA

MIP04782.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2898-RA 1255 CG2898-RA 1..1255 3..1257 6275 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10266866..10268120 3..1257 6185 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:03:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10375374..10376631 3..1260 6290 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10383472..10384729 3..1260 6290 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:50:21 has no hits.

MIP04782.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:51:13 Download gff for MIP04782.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10266863..10268120 1..1257 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:08:56 Download gff for MIP04782.complete
Subject Subject Range Query Range Percent Splice Strand
CG2898-RA 1..1056 127..1182 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:44:18 Download gff for MIP04782.complete
Subject Subject Range Query Range Percent Splice Strand
CG2898-RA 1..1056 127..1182 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:33:49 Download gff for MIP04782.complete
Subject Subject Range Query Range Percent Splice Strand
CG2898-RA 1..1056 127..1182 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:55 Download gff for MIP04782.complete
Subject Subject Range Query Range Percent Splice Strand
CG2898-RA 1..1056 127..1182 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-07 16:19:50 Download gff for MIP04782.complete
Subject Subject Range Query Range Percent Splice Strand
CG2898-RA 1..1104 79..1182 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:44:17 Download gff for MIP04782.complete
Subject Subject Range Query Range Percent Splice Strand
CG2898-RA 1..1255 3..1257 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:33:49 Download gff for MIP04782.complete
Subject Subject Range Query Range Percent Splice Strand
CG2898-RA 1..1255 3..1257 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:55 Download gff for MIP04782.complete
Subject Subject Range Query Range Percent Splice Strand
CG2898-RA 1..1255 3..1257 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:51:13 Download gff for MIP04782.complete
Subject Subject Range Query Range Percent Splice Strand
X 10375371..10376628 1..1257 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:51:13 Download gff for MIP04782.complete
Subject Subject Range Query Range Percent Splice Strand
X 10375371..10376628 1..1257 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:51:13 Download gff for MIP04782.complete
Subject Subject Range Query Range Percent Splice Strand
X 10375371..10376628 1..1257 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:33:49 Download gff for MIP04782.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10269404..10270661 1..1257 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:19:23 Download gff for MIP04782.complete
Subject Subject Range Query Range Percent Splice Strand
X 10383469..10384726 1..1257 99   Plus

MIP04782.pep Sequence

Translation from 126 to 1181

> MIP04782.pep
MCCAPMCGPSVCGPSMCNPPACRVPLEPLHPSTVYHCCPSTKCTLCCNNE
SKHECHCTCQRNKHIVEAFSCLFRVSKFQILTTLFLLAYHESRPLPRFPR
DRNWSVMENVKAPYSELHDLRIYDSLFDRCGNRIDPLDQKNTYKLLRLIF
LGPVLVPDQQAQLLAMLYTLNAHAVCPVDLNGLLSVLQYVKLDELVCGIL
EQDGRAKRFHSGRQCLELCNLYQKVVATDKDAVIKKHRRRKEKSKSKDSE
AQKKPRRTITAQIYCTRRVPEPEDVSSRIETITPIVRSTATSLRRSSNKK
SWMPVNRSSINNSEKGSRRGSRNLAGSPKRNKPEVSNVGVRMQGGDRQRT
K*

MIP04782.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG2898-PA 351 CG2898-PA 1..351 1..351 1885 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15394-PA 319 GI15394-PA 1..302 6..297 531 41.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19295-PA 326 GL19295-PA 32..322 37..345 486 37.7 Plus
Dper\GL26526-PA 294 GL26526-PA 32..210 52..232 356 40.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25903-PA 321 GA25903-PA 27..317 37..345 483 37.7 Plus
Dpse\GA28969-PA 429 GA28969-PA 28..201 57..232 352 40.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14791-PA 343 GJ14791-PA 79..303 59..277 489 44.4 Plus

MIP04782.hyp Sequence

Translation from 126 to 1181

> MIP04782.hyp
MCCAPMCGPSVCGPSMCNPPACRVPLEPLHPSTVYHCCPSTKCTLCCNNE
SKHECHCTCQRNKHIVEAFSCLFRVSKFQILTTLFLLAYHESRPLPRFPR
DRNWSVMENVKAPYSELHDLRIYDSLFDRCGNRIDPLDQKNTYKLLRLIF
LGPVLVPDQQAQLLAMLYTLNAHAVCPVDLNGLLSVLQYVKLDELVCGIL
EQDGRAKRFHSGRQCLELCNLYQKVVATDKDAVIKKHRRRKEKSKSKDSE
AQKKPRRTITAQIYCTRRVPEPEDVSSRIETITPIVRSTATSLRRSSNKK
SWMPVNRSSINNSEKGSRRGSRNLAGSPKRNKPEVSNVGVRMQGGDRQRT
K*

MIP04782.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2898-PA 351 CG2898-PA 1..351 1..351 1885 100 Plus