Clone MIP04978 Report

Search the DGRC for MIP04978

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:49
Well:78
Vector:pOT2
Associated Gene/TranscriptCG18808-RA
Protein status:MIP04978.pep: gold
Sequenced Size:1336

Clone Sequence Records

MIP04978.complete Sequence

1336 bp assembled on 2009-04-07

GenBank Submission: BT081997.1

> MIP04978.complete
CCCAGCTACACCGTTCTATTGGATGAAAATCAGCTGTACACAATGTTGGC
GCTCCTCCGGCCAGCACTGTGGCTGGGAAGCTGCCTTCGTGGCTATCACA
TGCATGCCGCCTCTACGCAGCAGCGGGGCGACACGTCCTTGGTTCTGGTG
GATGAGGCCCGCCGCTTTATCCAGGACTGCCTGCTACGGGTTGGAGTTTC
CCCCTCCAAGGTGCGCTGCATCAGCGAGTTCCTGGTTGTGGCGGACTATC
GAGGAAACTACGGAAGCGGGCTGAATCGCCTGGATTACTATCTCAGTGAT
CTGCAGAGCGGGCATGCCAAGGTGGGCGCAGAGCCTTCAATAATCAGTGA
AACGGTGTCCACCGCCCATGTAAATGGCAATTCCGCCTTGGGTGTGTTTG
TGGGAAACTTTTGTATGGATTTGGCGGTGAAGAAAGCTGAAGACTCTGGC
ATCGGTTTCGTAGTGGCCCAGCAATCTCACGACATTGGCATGGCCAGCTG
GTTTACATTTCGCGCTGCCGGCAAGGGATTAGCCGGAATCGTGATGTCCA
ATTCGGCTCCAACGATGATGGGTCCCAACTCAAAGTCTGCCAGCATTGGC
TCCAACTGCTTTGCCTTCTGCGTAAAGGGTGAGGAGTACCATTTTGTTCT
AGACATGGCGACCAGCGTGAAGGATATTGGAGCCGTGGAATGGGCTTGGG
CCAACGATGAGTATATACCGCATGGCTGGGCGGCCAACGAGGGTGGCTTA
TCCACCTGTTTTCCCAGCTTGGCCTTAAGGACACCATTACTATTTCCTGC
TGGTGGTCACAAAGGCTATTGCCTGTCAGCCGTGATAGATATTCTATGTG
GAGTGCTCTCTGGTGCCCAATATGCCACTCATATAACCATGGACCAGAAC
CAACCATCGAACTTGGGTCAAGTATTTATTGCTCTCGATCCAGAATTTTT
CTTGCCCAACTTTATGGAACGTTTCGATGACTTTTGTGGTCGCATCCAGA
ATAGCCAGCCGGCGGACGATTCAGAGCCCATCCGGCTACCTGGCGAACTG
GAGAGGATGCACATGAACTACGTGGAAGATTTGCGGGCTTTAGCCTATCC
GAATAGTCTTTTGACCAAGTACAAAGAAGTGGCGGAAAGGCTGTGCGTAA
AACCCATCGAGCTGGCTTTTGATAGGTGTCAGTCCAGGAAGAGCTTTTAG
TCTCATACTATAAATACTGTAAATGTAGTTCACAAAAAATATTATAGTTA
ATAGAAAAATGTTAAGCTTATTAAGTGAAGTATAAATAGCTACTCCTATG
CAGGAATGGTATAAGGACAAAAAAAAAAAAAAAAAA

MIP04978.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG18808-RA 1269 CG18808-RA 37..1269 1..1233 6165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4805448..4806765 1318..1 6455 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:04:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4806051..4807370 1320..1 6600 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4806051..4807370 1320..1 6600 100 Minus
Blast to na_te.dros performed 2019-03-16 08:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 1234..1294 1210..1270 116 65.6 Plus

MIP04978.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:13:19 Download gff for MIP04978.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4805448..4806765 1..1318 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:08:59 Download gff for MIP04978.complete
Subject Subject Range Query Range Percent Splice Strand
CG18808-RA 1..1158 43..1200 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:44:24 Download gff for MIP04978.complete
Subject Subject Range Query Range Percent Splice Strand
CG18808-RA 1..1158 43..1200 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:42:14 Download gff for MIP04978.complete
Subject Subject Range Query Range Percent Splice Strand
CG18808-RA 1..1158 43..1200 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:37:30 Download gff for MIP04978.complete
Subject Subject Range Query Range Percent Splice Strand
CG18808-RA 1..1158 43..1200 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-07 17:17:36 Download gff for MIP04978.complete
Subject Subject Range Query Range Percent Splice Strand
CG18808-RA 37..1269 1..1233 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:44:24 Download gff for MIP04978.complete
Subject Subject Range Query Range Percent Splice Strand
CG18808-RA 37..1269 1..1233 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:42:14 Download gff for MIP04978.complete
Subject Subject Range Query Range Percent Splice Strand
CG18808-RA 37..1354 1..1318 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:37:30 Download gff for MIP04978.complete
Subject Subject Range Query Range Percent Splice Strand
CG18808-RA 37..1354 1..1318 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:13:19 Download gff for MIP04978.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4806053..4807370 1..1318 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:13:19 Download gff for MIP04978.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4806053..4807370 1..1318 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:13:19 Download gff for MIP04978.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4806053..4807370 1..1318 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:42:14 Download gff for MIP04978.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4806053..4807370 1..1318 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:19:30 Download gff for MIP04978.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4806053..4807370 1..1318 100   Minus

MIP04978.pep Sequence

Translation from 0 to 1199

> MIP04978.pep
PSYTVLLDENQLYTMLALLRPALWLGSCLRGYHMHAASTQQRGDTSLVLV
DEARRFIQDCLLRVGVSPSKVRCISEFLVVADYRGNYGSGLNRLDYYLSD
LQSGHAKVGAEPSIISETVSTAHVNGNSALGVFVGNFCMDLAVKKAEDSG
IGFVVAQQSHDIGMASWFTFRAAGKGLAGIVMSNSAPTMMGPNSKSASIG
SNCFAFCVKGEEYHFVLDMATSVKDIGAVEWAWANDEYIPHGWAANEGGL
STCFPSLALRTPLLFPAGGHKGYCLSAVIDILCGVLSGAQYATHITMDQN
QPSNLGQVFIALDPEFFLPNFMERFDDFCGRIQNSQPADDSEPIRLPGEL
ERMHMNYVEDLRALAYPNSLLTKYKEVAERLCVKPIELAFDRCQSRKSF*

MIP04978.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24712-PA 398 GF24712-PA 29..398 30..399 1457 70.3 Plus
Dana\GF24300-PA 440 GF24300-PA 86..438 47..388 667 39.7 Plus
Dana\GF17333-PA 492 GF17333-PA 118..469 45..388 483 33 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14160-PA 385 GG14160-PA 1..385 15..399 1934 92.5 Plus
Dere\GG16165-PA 449 GG16165-PA 96..448 47..388 652 38.8 Plus
Dere\GG15586-PA 469 GG15586-PA 94..456 38..392 504 31.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12133-PA 362 GH12133-PA 1..361 34..388 688 39.1 Plus
Dgri\GH14969-PA 436 GH14969-PA 74..435 33..388 688 39 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG18808-PA 385 CG18808-PA 1..385 15..399 2030 100 Plus
CG10512-PB 381 CG10512-PB 20..378 39..386 625 38.8 Plus
CG10512-PA 446 CG10512-PA 85..443 39..386 625 38.8 Plus
CG10512-PD 361 CG10512-PD 8..358 47..386 624 39.4 Plus
CG10512-PC 361 CG10512-PC 8..358 47..386 624 39.4 Plus
CG17199-PA 461 CG17199-PA 93..444 45..388 501 33.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12569-PA 399 GI12569-PA 39..389 45..390 1076 57.5 Plus
Dmoj\GI13129-PA 433 GI13129-PA 66..432 29..388 685 39.4 Plus
Dmoj\GI10050-PA 450 GI10050-PA 78..445 30..388 460 31.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17929-PA 384 GL17929-PA 1..379 15..388 1099 56.2 Plus
Dper\GL24667-PA 361 GL24667-PA 8..361 47..391 659 39.4 Plus
Dper\GL12513-PA 468 GL12513-PA 115..465 46..388 536 35.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15088-PA 384 GA15088-PA 1..379 15..388 1100 55.9 Plus
Dpse\GA10363-PA 440 GA10363-PA 73..440 29..391 663 38.8 Plus
Dpse\GA14384-PA 468 GA14384-PA 115..465 46..388 542 36.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13948-PA 385 GM13948-PA 1..385 15..399 1998 96.6 Plus
Dsec\GM22347-PA 446 GM22347-PA 93..445 47..388 644 38.6 Plus
Dsec\GM23206-PA 461 GM23206-PA 89..453 38..394 510 32.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13232-PA 385 GD13232-PA 1..385 15..399 2000 96.6 Plus
Dsim\GD20077-PA 455 GD20077-PA 93..451 42..392 500 32.3 Plus
Dsim\GD17648-PA 286 GD17648-PA 28..248 47..266 409 38.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15473-PA 400 GJ15473-PA 16..390 24..390 1125 56.5 Plus
Dvir\GJ13877-PA 363 GJ13877-PA 10..362 47..388 690 39.9 Plus
Dvir\GJ23783-PA 520 GJ23783-PA 166..513 47..386 538 35.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19287-PA 388 GK19287-PA 9..385 26..398 1235 60.6 Plus
Dwil\GK16815-PA 362 GK16815-PA 9..361 47..388 659 39.2 Plus
Dwil\GK22789-PA 502 GK22789-PA 138..494 42..387 524 36.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20586-PA 385 GE20586-PA 1..385 15..399 1921 91.4 Plus
Dyak\GE23055-PA 440 GE23055-PA 87..439 47..388 652 38.5 Plus
Dyak\GE19733-PA 440 GE19733-PA 87..439 47..388 650 38.5 Plus
Dyak\GE11137-PA 460 GE11137-PA 99..457 38..388 504 32.3 Plus

MIP04978.hyp Sequence

Translation from 0 to 1199

> MIP04978.hyp
PSYTVLLDENQLYTMLALLRPALWLGSCLRGYHMHAASTQQRGDTSLVLV
DEARRFIQDCLLRVGVSPSKVRCISEFLVVADYRGNYGSGLNRLDYYLSD
LQSGHAKVGAEPSIISETVSTAHVNGNSALGVFVGNFCMDLAVKKAEDSG
IGFVVAQQSHDIGMASWFTFRAAGKGLAGIVMSNSAPTMMGPNSKSASIG
SNCFAFCVKGEEYHFVLDMATSVKDIGAVEWAWANDEYIPHGWAANEGGL
STCFPSLALRTPLLFPAGGHKGYCLSAVIDILCGVLSGAQYATHITMDQN
QPSNLGQVFIALDPEFFLPNFMERFDDFCGRIQNSQPADDSEPIRLPGEL
ERMHMNYVEDLRALAYPNSLLTKYKEVAERLCVKPIELAFDRCQSRKSF*

MIP04978.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG18808-PA 385 CG18808-PA 1..385 15..399 2030 100 Plus
CG10512-PB 381 CG10512-PB 20..378 39..386 625 38.8 Plus
CG10512-PA 446 CG10512-PA 85..443 39..386 625 38.8 Plus
CG10512-PD 361 CG10512-PD 8..358 47..386 624 39.4 Plus
CG10512-PC 361 CG10512-PC 8..358 47..386 624 39.4 Plus